RNA–Protein interactions for RNA: ENST00000222823.8

NOD1-201, Transcript of nucleotide binding oligomerization domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NOD1, Length 4,499 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1-201ENST00000222823 CCDC151A5D8V7 595 aa12.49□□□□□ -0.41
NOD1-201ENST00000222823 PALM3A6NDB9 673 aaPredicted RBP12.49□□□□□ -0.41
NOD1-201ENST00000222823 TFAMQ00059 246 aaKnown RBP12.49□□□□□ -0.41
NOD1-201ENST00000222823 LMNB2Q03252 620 aa12.49□□□□□ -0.41
NOD1-201ENST00000222823 MTERF2Q49AM1 385 aa12.49□□□□□ -0.41
NOD1-201ENST00000222823 TCP11X2Q5H9J9 407 aa12.49□□□□□ -0.41
NOD1-201ENST00000222823 SPOUT1Q5T280 376 aaKnown RBP12.49□□□□□ -0.41
NOD1-201ENST00000222823 MIS18BP1Q6P0N0 1132 aa12.49□□□□□ -0.41
NOD1-201ENST00000222823 IGDCC4Q8TDY8 1250 aa12.49□□□□□ -0.41
NOD1-201ENST00000222823 FAM81BQ96LP2 452 aa12.49□□□□□ -0.41
NOD1-201ENST00000222823 APOL6Q9BWW8 343 aa12.49□□□□□ -0.41
NOD1-201ENST00000222823 HPS5Q9UPZ3 1129 aa12.49□□□□□ -0.41
NOD1-201ENST00000222823 TLR3O15455 904 aaKnown RBP12.49□□□□□ -0.41
NOD1-201ENST00000222823 FTCDO95954 541 aa12.49□□□□□ -0.41
NOD1-201ENST00000222823 ABL1P00519 1130 aa12.49□□□□□ -0.41
NOD1-201ENST00000222823 UBE2TQ9NPD8 197 aaPredicted RBP12.49□□□□□ -0.41
NOD1-201ENST00000222823 AKT3Q9Y243 479 aa12.49□□□□□ -0.41
NOD1-201ENST00000222823 ATP8B1O43520 1251 aa12.48□□□□□ -0.41
NOD1-201ENST00000222823 PDXDC2PQ6P474 469 aa12.48□□□□□ -0.41
NOD1-201ENST00000222823 EEPD1Q7L9B9 569 aa12.48□□□□□ -0.41
NOD1-201ENST00000222823 PTPN22Q9Y2R2 807 aa12.48□□□□□ -0.41
NOD1-201ENST00000222823 TACC3Q9Y6A5 838 aa12.48□□□□□ -0.41
NOD1-201ENST00000222823 KIF11P52732 1056 aa12.48□□□□□ -0.41
NOD1-201ENST00000222823 AP3B2Q13367 1082 aa12.48□□□□□ -0.41
NOD1-201ENST00000222823 ALKBH5Q6P6C2 394 aaKnown RBP12.48□□□□□ -0.41
NOD1-201ENST00000222823 PODNQ7Z5L7 613 aa12.48□□□□□ -0.41
NOD1-201ENST00000222823 LMNTD2Q8IXW0 634 aa12.48□□□□□ -0.41
NOD1-201ENST00000222823 NME8Q8N427 588 aa12.48□□□□□ -0.41
NOD1-201ENST00000222823 VCX3BQ9H321 246 aa12.48□□□□□ -0.41
NOD1-201ENST00000222823 FAM114A2Q9NRY5 505 aa12.48□□□□□ -0.41
NOD1-201ENST00000222823 FAM208AQ9UK61 1670 aaKnown RBP12.48□□□□□ -0.41
NOD1-201ENST00000222823 NFAT5O94916 1531 aa12.48□□□□□ -0.41
NOD1-201ENST00000222823 TOPAZ1Q8N9V7 1692 aa12.48□□□□□ -0.41
NOD1-201ENST00000222823 ZBTB5O15062 677 aa12.48□□□□□ -0.41
NOD1-201ENST00000222823 AP5Z1O43299 807 aa12.48□□□□□ -0.41
NOD1-201ENST00000222823 BUB1BO60566 1050 aaPredicted RBP12.48□□□□□ -0.41
NOD1-201ENST00000222823 KCNJ6P48051 423 aa12.48□□□□□ -0.41
NOD1-201ENST00000222823 EPHB4P54760 987 aa12.48□□□□□ -0.41
NOD1-201ENST00000222823 IFRD2Q12894 506 aaPredicted RBP12.48□□□□□ -0.41
NOD1-201ENST00000222823 CUL4BQ13620 913 aa12.48□□□□□ -0.41
NOD1-201ENST00000222823 CTTNQ14247 550 aaKnown RBP12.48□□□□□ -0.41
NOD1-201ENST00000222823 PPP4R3CPQ6ZMV5 832 aa12.48□□□□□ -0.41
NOD1-201ENST00000222823 EXOC8Q8IYI6 725 aa12.48□□□□□ -0.41
NOD1-201ENST00000222823 RTKN2Q8IZC4 609 aa12.48□□□□□ -0.41
NOD1-201ENST00000222823 ANKRD36BP1Q96IX9 119 aa12.48□□□□□ -0.41
NOD1-201ENST00000222823 RPS6KC1Q96S38 1066 aa12.48□□□□□ -0.41
NOD1-201ENST00000222823 MAD1L1Q9Y6D9 718 aa12.48□□□□□ -0.41
NOD1-201ENST00000222823 USP27XA6NNY8 438 aa12.47□□□□□ -0.41
NOD1-201ENST00000222823 USP17L5A8MUK1 530 aa12.47□□□□□ -0.41
NOD1-201ENST00000222823 SERPING1P05155 500 aa12.47□□□□□ -0.41
NOD1-201ENST00000222823 CASP1P29466 404 aa12.47□□□□□ -0.41
NOD1-201ENST00000222823 PLTPP55058 493 aa12.47□□□□□ -0.41
NOD1-201ENST00000222823 MB21D1Q8N884 522 aa12.47□□□□□ -0.41
NOD1-201ENST00000222823 NXF1Q9UBU9 619 aaKnown RBP12.47□□□□□ -0.41
NOD1-201ENST00000222823 MST1RQ04912 1400 aa12.47□□□□□ -0.41
NOD1-201ENST00000222823 SYNJ2BP-COX16A0A087WUM0 186 aa12.47□□□□□ -0.41
NOD1-201ENST00000222823 A6NJR5 290 aa12.47□□□□□ -0.41
NOD1-201ENST00000222823 GOLGA8SH3BPF8 625 aa12.47□□□□□ -0.41
NOD1-201ENST00000222823 C21orf2O43822 256 aa12.47□□□□□ -0.41
NOD1-201ENST00000222823 NOL3O60936 208 aaKnown RBP12.47□□□□□ -0.41
NOD1-201ENST00000222823 CCZ1BP86790 482 aa12.47□□□□□ -0.41
NOD1-201ENST00000222823 CCZ1P86791 482 aaPredicted RBP12.47□□□□□ -0.41
NOD1-201ENST00000222823 TTBK2Q6IQ55 1244 aa12.47□□□□□ -0.41
NOD1-201ENST00000222823 UNC13DQ70J99 1090 aa12.47□□□□□ -0.41
NOD1-201ENST00000222823 GSDMBQ8TAX9 411 aa12.47□□□□□ -0.41
NOD1-201ENST00000222823 COX16Q9P0S2 106 aa12.47□□□□□ -0.41
NOD1-201ENST00000222823 NMT2O60551 498 aa12.47□□□□□ -0.41
NOD1-201ENST00000222823 MFAP3LO75121 409 aa12.47□□□□□ -0.41
NOD1-201ENST00000222823 SEC31AO94979 1220 aaKnown RBP12.47□□□□□ -0.41
NOD1-201ENST00000222823 MOCS3O95396 460 aa12.47□□□□□ -0.41
NOD1-201ENST00000222823 CRKP46108 304 aa12.47□□□□□ -0.41
NOD1-201ENST00000222823 SNAP25P60880 206 aa12.47□□□□□ -0.41
NOD1-201ENST00000222823 TSNAXIP1Q2TAA8 658 aa12.47□□□□□ -0.41
NOD1-201ENST00000222823 OXER1Q8TDS5 423 aa12.47□□□□□ -0.41
NOD1-201ENST00000222823 ZNF341Q9BYN7 854 aa12.47□□□□□ -0.41
NOD1-201ENST00000222823 TDRD3Q9H7E2 651 aaKnown RBP12.47□□□□□ -0.41
NOD1-201ENST00000222823 MRPL47Q9HD33 250 aaKnown RBP12.47□□□□□ -0.41
NOD1-201ENST00000222823 TUBE1Q9UJT0 475 aa12.47□□□□□ -0.41
NOD1-201ENST00000222823 POTEMA6NI47 508 aa12.47□□□□□ -0.41
NOD1-201ENST00000222823 CCND2P30279 289 aa12.47□□□□□ -0.41
NOD1-201ENST00000222823 ABCD1P33897 745 aa12.47□□□□□ -0.41
NOD1-201ENST00000222823 YWHAGP61981 247 aaKnown RBP eCLIP12.47□□□□□ -0.41
NOD1-201ENST00000222823 SGO2Q562F6 1265 aa12.47□□□□□ -0.41
NOD1-201ENST00000222823 RINT1Q6NUQ1 792 aa12.47□□□□□ -0.41
NOD1-201ENST00000222823 ZNF34Q8IZ26 560 aa12.47□□□□□ -0.41
NOD1-201ENST00000222823 PPP4R1Q8TF05 950 aa12.47□□□□□ -0.41
NOD1-201ENST00000222823 FAM193BQ96PV7 902 aaPredicted RBP12.47□□□□□ -0.41
NOD1-201ENST00000222823 USP17L15C9J2P7 530 aa12.46□□□□□ -0.41
NOD1-201ENST00000222823 USP17L13C9JLJ4 530 aa12.46□□□□□ -0.41
NOD1-201ENST00000222823 USP17L11C9JVI0 530 aa12.46□□□□□ -0.41
NOD1-201ENST00000222823 USP17L18D6R9N7 530 aa12.46□□□□□ -0.41
NOD1-201ENST00000222823 USP17L22D6RA61 530 aa12.46□□□□□ -0.41
NOD1-201ENST00000222823 USP17L17D6RBQ6 530 aa12.46□□□□□ -0.41
NOD1-201ENST00000222823 USP17L19D6RCP7 530 aa12.46□□□□□ -0.41
NOD1-201ENST00000222823 USP17L20D6RJB6 530 aa12.46□□□□□ -0.41
NOD1-201ENST00000222823 K7ERI5 159 aa12.46□□□□□ -0.41
NOD1-201ENST00000222823 USP17L24Q0WX57 530 aa12.46□□□□□ -0.41
NOD1-201ENST00000222823 C10orf76Q5T2E6 689 aa12.46□□□□□ -0.41
NOD1-201ENST00000222823 TBC1D9BQ66K14 1250 aa12.46□□□□□ -0.41
NOD1-201ENST00000222823 USP17L6PQ6QN14 398 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms