RNA–Protein interactions for RNA: ENST00000626109.1

LINC00538-201, long intergenic non-protein coding RNA 538, humanhuman

BASIC

Gene LINC00538, Length 1,906 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00538-201ENST00000626109 RIC8AQ9NPQ8 531 aa12.93□□□□□ -0.34
LINC00538-201ENST00000626109 ORC3Q9UBD5 711 aaPredicted RBP12.93□□□□□ -0.34
LINC00538-201ENST00000626109 PCDHA7Q9UN72 937 aa12.93□□□□□ -0.34
LINC00538-201ENST00000626109 PDHBP11177 359 aa12.92□□□□□ -0.34
LINC00538-201ENST00000626109 OAS2P29728 719 aaKnown RBP12.92□□□□□ -0.34
LINC00538-201ENST00000626109 KIF5BP33176 963 aa12.92□□□□□ -0.34
LINC00538-201ENST00000626109 GJA5P36382 358 aa12.92□□□□□ -0.34
LINC00538-201ENST00000626109 SLC1A4P43007 532 aa12.92□□□□□ -0.34
LINC00538-201ENST00000626109 MASP1P48740 699 aa12.92□□□□□ -0.34
LINC00538-201ENST00000626109 METAP2P50579 478 aaKnown RBP eCLIP12.92□□□□□ -0.34
LINC00538-201ENST00000626109 RACK1P63244 317 aaKnown RBP12.92□□□□□ -0.34
LINC00538-201ENST00000626109 TROAPQ12815 778 aa12.92□□□□□ -0.34
LINC00538-201ENST00000626109 ALFQ53S48 1182 aa12.92□□□□□ -0.34
LINC00538-201ENST00000626109 RAB11FIP4Q86YS3 637 aa12.92□□□□□ -0.34
LINC00538-201ENST00000626109 SPICE1Q8N0Z3 855 aa12.92□□□□□ -0.34
LINC00538-201ENST00000626109 LINC00301Q8NCQ3 95 aa12.92□□□□□ -0.34
LINC00538-201ENST00000626109 DCAF4Q8WV16 495 aa12.92□□□□□ -0.34
LINC00538-201ENST00000626109 GMCL1Q96IK5 515 aa12.92□□□□□ -0.34
LINC00538-201ENST00000626109 C12orf42Q96LP6 360 aa12.92□□□□□ -0.34
LINC00538-201ENST00000626109 MAP3K14Q99558 947 aa12.92□□□□□ -0.34
LINC00538-201ENST00000626109 GOLPH3LQ9H4A5 285 aa12.92□□□□□ -0.34
LINC00538-201ENST00000626109 A0A0G2JLL6 359 aaPredicted RBP12.92□□□□□ -0.34
LINC00538-201ENST00000626109 PRRT4C9JH25 899 aa12.92□□□□□ -0.34
LINC00538-201ENST00000626109 SLC10A3P09131 477 aa12.92□□□□□ -0.34
LINC00538-201ENST00000626109 PARP1P09874 1014 aaKnown RBP12.92□□□□□ -0.34
LINC00538-201ENST00000626109 FDPSP14324 419 aaKnown RBP12.92□□□□□ -0.34
LINC00538-201ENST00000626109 RXRAP19793 462 aa12.92□□□□□ -0.34
LINC00538-201ENST00000626109 GTF2A2P52657 109 aa12.92□□□□□ -0.34
LINC00538-201ENST00000626109 GUCY1B3Q02153 619 aa12.92□□□□□ -0.34
LINC00538-201ENST00000626109 GRM4Q14833 912 aa12.92□□□□□ -0.34
LINC00538-201ENST00000626109 RTN1Q16799 776 aa12.92□□□□□ -0.34
LINC00538-201ENST00000626109 FAM83BQ5T0W9 1011 aa12.92□□□□□ -0.34
LINC00538-201ENST00000626109 ANO1Q5XXA6 986 aa12.92□□□□□ -0.34
LINC00538-201ENST00000626109 C16orf54Q6UWD8 224 aa12.92□□□□□ -0.34
LINC00538-201ENST00000626109 PRRT2Q7Z6L0 340 aaPredicted RBP12.92□□□□□ -0.34
LINC00538-201ENST00000626109 CCDC144CPQ8IYA2 1237 aa12.92□□□□□ -0.34
LINC00538-201ENST00000626109 FAM210AQ96ND0 272 aa12.92□□□□□ -0.34
LINC00538-201ENST00000626109 MAFFQ9ULX9 164 aa12.92□□□□□ -0.34
LINC00538-201ENST00000626109 WDR46O15213 610 aaKnown RBP12.91□□□□□ -0.34
LINC00538-201ENST00000626109 SPTLC2O15270 562 aa12.91□□□□□ -0.34
LINC00538-201ENST00000626109 SNHG28P0DPA3 235 aa12.91□□□□□ -0.34
LINC00538-201ENST00000626109 BMP3P12645 472 aa12.91□□□□□ -0.34
LINC00538-201ENST00000626109 HOXC13P31276 330 aa12.91□□□□□ -0.34
LINC00538-201ENST00000626109 GSDMDP57764 484 aa12.91□□□□□ -0.34
LINC00538-201ENST00000626109 PPP2R5BQ15173 497 aa12.91□□□□□ -0.34
LINC00538-201ENST00000626109 QPCTQ16769 361 aa12.91□□□□□ -0.34
LINC00538-201ENST00000626109 CRTC2Q53ET0 693 aaPredicted RBP12.91□□□□□ -0.34
LINC00538-201ENST00000626109 ASPRV1Q53RT3 343 aa12.91□□□□□ -0.34
LINC00538-201ENST00000626109 GPATCH4Q5T3I0 446 aaKnown RBP12.91□□□□□ -0.34
LINC00538-201ENST00000626109 GADL1Q6ZQY3 521 aa12.91□□□□□ -0.34
LINC00538-201ENST00000626109 FASTKD5Q7L8L6 764 aaKnown RBP12.91□□□□□ -0.34
LINC00538-201ENST00000626109 FMR1NBQ8N0W7 255 aaPredicted RBP12.91□□□□□ -0.34
LINC00538-201ENST00000626109 FANCBQ8NB91 859 aa12.91□□□□□ -0.34
LINC00538-201ENST00000626109 SKA1Q96BD8 255 aa12.91□□□□□ -0.34
LINC00538-201ENST00000626109 VMP1Q96GC9 406 aa12.91□□□□□ -0.34
LINC00538-201ENST00000626109 BPIFA3Q9BQP9 254 aa12.91□□□□□ -0.34
LINC00538-201ENST00000626109 CCDC94Q9BW85 323 aaPredicted RBP12.91□□□□□ -0.34
LINC00538-201ENST00000626109 XPO4Q9C0E2 1151 aaKnown RBP12.91□□□□□ -0.34
LINC00538-201ENST00000626109 NID2Q14112 1375 aa12.9□□□□□ -0.34
LINC00538-201ENST00000626109 CCDC196A0A1B0GTZ2 297 aa12.9□□□□□ -0.34
LINC00538-201ENST00000626109 RASSF10A6NK89 507 aa12.9□□□□□ -0.34
LINC00538-201ENST00000626109 SMTNL1A8MU46 457 aa12.9□□□□□ -0.34
LINC00538-201ENST00000626109 CETPP11597 493 aa12.9□□□□□ -0.34
LINC00538-201ENST00000626109 VCAM1P19320 739 aa12.9□□□□□ -0.34
LINC00538-201ENST00000626109 PPM1FP49593 454 aaPredicted RBP12.9□□□□□ -0.34
LINC00538-201ENST00000626109 ZNF543Q08ER8 600 aa12.9□□□□□ -0.34
LINC00538-201ENST00000626109 DGKZQ13574 1117 aa12.9□□□□□ -0.34
LINC00538-201ENST00000626109 SYCP1Q15431 976 aa12.9□□□□□ -0.34
LINC00538-201ENST00000626109 TPD52L1Q16890 204 aaPredicted RBP12.9□□□□□ -0.34
LINC00538-201ENST00000626109 DEFB115Q30KQ5 88 aa12.9□□□□□ -0.34
LINC00538-201ENST00000626109 KIAA1755Q5JYT7 1200 aa12.9□□□□□ -0.34
LINC00538-201ENST00000626109 C11orf57Q6ZUT1 292 aaPredicted RBP12.9□□□□□ -0.34
LINC00538-201ENST00000626109 RASGRP2Q7LDG7 609 aa12.9□□□□□ -0.34
LINC00538-201ENST00000626109 LRRC8AQ8IWT6 810 aa12.9□□□□□ -0.34
LINC00538-201ENST00000626109 MYO1HQ8N1T3 1032 aa12.9□□□□□ -0.34
LINC00538-201ENST00000626109 ANKRD42Q8N9B4 389 aa12.9□□□□□ -0.34
LINC00538-201ENST00000626109 JMYQ8N9B5 988 aa12.9□□□□□ -0.34
LINC00538-201ENST00000626109 CENPTQ96BT3 561 aa12.9□□□□□ -0.34
LINC00538-201ENST00000626109 NELL2Q99435 816 aa12.9□□□□□ -0.34
LINC00538-201ENST00000626109 IMPACTQ9P2X3 320 aa12.9□□□□□ -0.34
LINC00538-201ENST00000626109 ZNF69Q9UC07 566 aa12.9□□□□□ -0.34
LINC00538-201ENST00000626109 HPS5Q9UPZ3 1129 aa12.9□□□□□ -0.34
LINC00538-201ENST00000626109 FRMPD2Q68DX3 1309 aaPredicted RBP12.9□□□□□ -0.34
LINC00538-201ENST00000626109 CCL15-CCL14A0A0B4J2E2 113 aa12.9□□□□□ -0.35
LINC00538-201ENST00000626109 TNNT1P13805 278 aa12.9□□□□□ -0.35
LINC00538-201ENST00000626109 GNAQP50148 359 aa12.9□□□□□ -0.35
LINC00538-201ENST00000626109 GRM1Q13255 1194 aa12.9□□□□□ -0.35
LINC00538-201ENST00000626109 CCL15Q16663 113 aa12.9□□□□□ -0.35
LINC00538-201ENST00000626109 PPHLN1Q8NEY8 458 aaKnown RBP12.9□□□□□ -0.35
LINC00538-201ENST00000626109 FLCNQ8NFG4 579 aa12.9□□□□□ -0.35
LINC00538-201ENST00000626109 SH3TC2Q8TF17 1288 aa12.9□□□□□ -0.35
LINC00538-201ENST00000626109 TBC1D31Q96DN5 1066 aa12.9□□□□□ -0.35
LINC00538-201ENST00000626109 NUP88Q99567 741 aaPredicted RBP12.9□□□□□ -0.35
LINC00538-201ENST00000626109 FTOQ9C0B1 505 aaKnown RBP eCLIP12.9□□□□□ -0.35
LINC00538-201ENST00000626109 NGRNQ9NPE2 291 aaKnown RBP12.9□□□□□ -0.35
LINC00538-201ENST00000626109 KIAA1468Q9P260 1216 aa12.9□□□□□ -0.35
LINC00538-201ENST00000626109 A6NCN8 305 aa12.89□□□□□ -0.35
LINC00538-201ENST00000626109 MANSC4A6NHS7 340 aaPredicted RBP12.89□□□□□ -0.35
LINC00538-201ENST00000626109 GOLGA8HP0CJ92 632 aa12.89□□□□□ -0.35
LINC00538-201ENST00000626109 EPB42P16452 691 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms