RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 TBCKQ8TEA7 893 aa22.9■■□□□ 1.26
SS18-218ENST00000581021 WNT8BQ93098 351 aa22.9■■□□□ 1.26
SS18-218ENST00000581021 TUT1Q9H6E5 874 aaKnown RBP22.9■■□□□ 1.26
SS18-218ENST00000581021 CCL23P55773 120 aa22.89■■□□□ 1.25
SS18-218ENST00000581021 PRR16Q569H4 304 aa22.89■■□□□ 1.25
SS18-218ENST00000581021 EARS2Q5JPH6 523 aaKnown RBP22.89■■□□□ 1.25
SS18-218ENST00000581021 GALNT17Q6IS24 598 aa22.89■■□□□ 1.25
SS18-218ENST00000581021 SLC9A2Q9UBY0 812 aa22.89■■□□□ 1.25
SS18-218ENST00000581021 FAM205CA6NFA0 338 aa22.88■■□□□ 1.25
SS18-218ENST00000581021 DDX39AO00148 427 aaKnown RBP22.88■■□□□ 1.25
SS18-218ENST00000581021 SUPT20HL2P0C7V6 817 aa22.88■■□□□ 1.25
SS18-218ENST00000581021 SMIM10L2AP0DMW4 78 aa22.88■■□□□ 1.25
SS18-218ENST00000581021 SMIM10L2BP0DMW5 78 aa22.88■■□□□ 1.25
SS18-218ENST00000581021 FOSBP53539 338 aa22.88■■□□□ 1.25
SS18-218ENST00000581021 ACTR2P61160 394 aa22.88■■□□□ 1.25
SS18-218ENST00000581021 SEPT1Q8WYJ6 367 aa22.88■■□□□ 1.25
SS18-218ENST00000581021 SCLYQ96I15 445 aa22.88■■□□□ 1.25
SS18-218ENST00000581021 BACH2Q9BYV9 841 aa22.88■■□□□ 1.25
SS18-218ENST00000581021 RNPEPQ9H4A4 650 aa22.88■■□□□ 1.25
SS18-218ENST00000581021 IPO5O00410 1097 aaKnown RBP22.87■■□□□ 1.25
SS18-218ENST00000581021 TDP2O95551 362 aa22.87■■□□□ 1.25
SS18-218ENST00000581021 ACRP10323 421 aa22.87■■□□□ 1.25
SS18-218ENST00000581021 TNFRSF25Q93038 417 aa22.87■■□□□ 1.25
SS18-218ENST00000581021 LRCH3Q96II8 777 aa22.87■■□□□ 1.25
SS18-218ENST00000581021 SDF4Q9BRK5 362 aa22.87■■□□□ 1.25
SS18-218ENST00000581021 UPF2Q9HAU5 1272 aaKnown RBP22.87■■□□□ 1.25
SS18-218ENST00000581021 TANC1Q9C0D5 1861 aa22.87■■□□□ 1.25
SS18-218ENST00000581021 EMSYQ7Z589 1322 aa22.86■■□□□ 1.25
SS18-218ENST00000581021 LGR5O75473 907 aa22.86■■□□□ 1.25
SS18-218ENST00000581021 USP11P51784 963 aa22.86■■□□□ 1.25
SS18-218ENST00000581021 SETQ01105 290 aaPredicted RBP22.86■■□□□ 1.25
SS18-218ENST00000581021 NR5A1Q13285 461 aa22.86■■□□□ 1.25
SS18-218ENST00000581021 INF2Q27J81 1249 aa22.86■■□□□ 1.25
SS18-218ENST00000581021 TRIM71Q2Q1W2 868 aaKnown RBP22.86■■□□□ 1.25
SS18-218ENST00000581021 WASF1Q92558 559 aa22.86■■□□□ 1.25
SS18-218ENST00000581021 GJA10Q969M2 543 aa22.86■■□□□ 1.25
SS18-218ENST00000581021 BUD13Q9BRD0 619 aaKnown RBP eCLIP22.86■■□□□ 1.25
SS18-218ENST00000581021 ZNF577Q9BSK1 485 aa22.86■■□□□ 1.25
SS18-218ENST00000581021 MSH4O15457 936 aa22.85■■□□□ 1.25
SS18-218ENST00000581021 MARK3P27448 753 aa22.85■■□□□ 1.25
SS18-218ENST00000581021 NONOQ15233 471 aaKnown RBP eCLIP22.85■■□□□ 1.25
SS18-218ENST00000581021 LRIT3Q3SXY7 679 aa22.85■■□□□ 1.25
SS18-218ENST00000581021 KRT25Q7Z3Z0 450 aa22.85■■□□□ 1.25
SS18-218ENST00000581021 TMEM199Q8N511 208 aa22.85■■□□□ 1.25
SS18-218ENST00000581021 MBOAT7Q96N66 472 aa22.85■■□□□ 1.25
SS18-218ENST00000581021 SETD4Q9NVD3 440 aa22.85■■□□□ 1.25
SS18-218ENST00000581021 NOD1Q9Y239 953 aa22.85■■□□□ 1.25
SS18-218ENST00000581021 TRIP12Q14669 1992 aaPredicted RBP22.85■■□□□ 1.25
SS18-218ENST00000581021 SCN5AQ14524 2016 aa22.84■■□□□ 1.25
SS18-218ENST00000581021 CYP3A7-CYP3A51PA0A087WV96 503 aa22.84■■□□□ 1.25
SS18-218ENST00000581021 ATG7O95352 703 aa22.84■■□□□ 1.25
SS18-218ENST00000581021 CYP3A7P24462 503 aa22.84■■□□□ 1.25
SS18-218ENST00000581021 PPIGQ13427 754 aaKnown RBP eCLIP22.84■■□□□ 1.25
SS18-218ENST00000581021 TMEM240Q5SV17 173 aa22.84■■□□□ 1.25
SS18-218ENST00000581021 TRAF7Q6Q0C0 670 aa22.84■■□□□ 1.25
SS18-218ENST00000581021 LMBR1Q8WVP7 490 aa22.84■■□□□ 1.25
SS18-218ENST00000581021 ZSCAN31Q96LW9 406 aaPredicted RBP22.84■■□□□ 1.25
SS18-218ENST00000581021 IL23AQ9NPF7 189 aa22.84■■□□□ 1.25
SS18-218ENST00000581021 SH2B1Q9NRF2 756 aaPredicted RBP22.84■■□□□ 1.25
SS18-218ENST00000581021 ZNF215Q9UL58 517 aaPredicted RBP22.84■■□□□ 1.25
SS18-218ENST00000581021 IGKV6D-21A0A0A0MT36 114 aa22.83■■□□□ 1.25
SS18-218ENST00000581021 C17orf102A2RUQ5 167 aa22.83■■□□□ 1.25
SS18-218ENST00000581021 PITPNM1O00562 1244 aa22.83■■□□□ 1.25
SS18-218ENST00000581021 TREHO43280 583 aa22.83■■□□□ 1.25
SS18-218ENST00000581021 SLC37A4O43826 429 aa22.83■■□□□ 1.25
SS18-218ENST00000581021 MMP1P03956 469 aa22.83■■□□□ 1.25
SS18-218ENST00000581021 XBP1P17861 261 aa22.83■■□□□ 1.25
SS18-218ENST00000581021 ADAM17P78536 824 aa22.83■■□□□ 1.25
SS18-218ENST00000581021 RBL2Q08999 1139 aa22.83■■□□□ 1.25
SS18-218ENST00000581021 GPNMBQ14956 572 aa22.83■■□□□ 1.25
SS18-218ENST00000581021 KRT40Q6A162 431 aa22.83■■□□□ 1.25
SS18-218ENST00000581021 ABHD15Q6UXT9 468 aa22.83■■□□□ 1.25
SS18-218ENST00000581021 PIK3AP1Q6ZUJ8 805 aa22.83■■□□□ 1.25
SS18-218ENST00000581021 SERINC5Q86VE9 423 aa22.83■■□□□ 1.25
SS18-218ENST00000581021 SLC5A5Q92911 643 aa22.83■■□□□ 1.25
SS18-218ENST00000581021 LLPHQ9BRT6 129 aaKnown RBP22.83■■□□□ 1.25
SS18-218ENST00000581021 PTK7Q13308 1070 aa22.82■■□□□ 1.24
SS18-218ENST00000581021 Q4G0T1 1027 aa22.82■■□□□ 1.24
SS18-218ENST00000581021 ZNF365Q70YC5 407 aa22.82■■□□□ 1.24
SS18-218ENST00000581021 CCDC60Q8IWA6 550 aaPredicted RBP22.82■■□□□ 1.24
SS18-218ENST00000581021 GLG1Q92896 1179 aa22.82■■□□□ 1.24
SS18-218ENST00000581021 SMARCAD1Q9H4L7 1026 aa22.82■■□□□ 1.24
SS18-218ENST00000581021 ERAP1Q9NZ08 941 aa22.82■■□□□ 1.24
SS18-218ENST00000581021 CCDC194A0A1B0GVG4 234 aa22.81■■□□□ 1.24
SS18-218ENST00000581021 BTBD18B2RXH4 712 aa22.81■■□□□ 1.24
SS18-218ENST00000581021 IQCF3P0C7M6 154 aa22.81■■□□□ 1.24
SS18-218ENST00000581021 CKBP12277 381 aa22.81■■□□□ 1.24
SS18-218ENST00000581021 KRT2P35908 639 aa22.81■■□□□ 1.24
SS18-218ENST00000581021 GUCY1B3Q02153 619 aa22.81■■□□□ 1.24
SS18-218ENST00000581021 RASIP1Q5U651 963 aa22.81■■□□□ 1.24
SS18-218ENST00000581021 ETNPPLQ8TBG4 499 aa22.81■■□□□ 1.24
SS18-218ENST00000581021 CAGE1Q8TC20 777 aa22.81■■□□□ 1.24
SS18-218ENST00000581021 ATP6V0A1Q93050 837 aa22.81■■□□□ 1.24
SS18-218ENST00000581021 ZBTB10Q96DT7 871 aa22.81■■□□□ 1.24
SS18-218ENST00000581021 RNPC3Q96LT9 517 aaKnown RBP22.81■■□□□ 1.24
SS18-218ENST00000581021 WNT7AO00755 349 aa22.8■■□□□ 1.24
SS18-218ENST00000581021 ST18O60284 1047 aa22.8■■□□□ 1.24
SS18-218ENST00000581021 BFSP2Q13515 415 aa22.8■■□□□ 1.24
SS18-218ENST00000581021 MBTPS1Q14703 1052 aa22.8■■□□□ 1.24
SS18-218ENST00000581021 PLCB4Q15147 1175 aa22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms