RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 CUL1Q13616 776 aa19.26■□□□□ 0.67
SYNE3-202ENST00000553340 C10orf76Q5T2E6 689 aa19.26■□□□□ 0.67
SYNE3-202ENST00000553340 CCDC91Q7Z6B0 441 aa19.26■□□□□ 0.67
SYNE3-202ENST00000553340 COA7Q96BR5 231 aa19.26■□□□□ 0.67
SYNE3-202ENST00000553340 NCAPGQ9BPX3 1015 aa19.26■□□□□ 0.67
SYNE3-202ENST00000553340 GGA2Q9UJY4 613 aa19.26■□□□□ 0.67
SYNE3-202ENST00000553340 EDIL3O43854 480 aa19.25■□□□□ 0.67
SYNE3-202ENST00000553340 SEC24CP53992 1094 aa19.25■□□□□ 0.67
SYNE3-202ENST00000553340 GCOM1H8Y6P7 765 aaPredicted RBP19.25■□□□□ 0.67
SYNE3-202ENST00000553340 SSBP05455 408 aaKnown RBP eCLIP19.25■□□□□ 0.67
SYNE3-202ENST00000553340 MYZAPP0CAP1 466 aa19.25■□□□□ 0.67
SYNE3-202ENST00000553340 ECM1Q16610 540 aa19.25■□□□□ 0.67
SYNE3-202ENST00000553340 NBPF5PQ86XG9 351 aaPredicted RBP19.25■□□□□ 0.67
SYNE3-202ENST00000553340 MARCH10Q8NA82 808 aaPredicted RBP19.25■□□□□ 0.67
SYNE3-202ENST00000553340 LRRC45Q96CN5 670 aa19.25■□□□□ 0.67
SYNE3-202ENST00000553340 PBKQ96KB5 322 aa19.25■□□□□ 0.67
SYNE3-202ENST00000553340 TBC1D7Q9P0N9 293 aa19.25■□□□□ 0.67
SYNE3-202ENST00000553340 E7EVH7 732 aa19.24■□□□□ 0.67
SYNE3-202ENST00000553340 MYO1FO00160 1098 aa19.24■□□□□ 0.67
SYNE3-202ENST00000553340 HPDP32754 393 aaPredicted RBP19.24■□□□□ 0.67
SYNE3-202ENST00000553340 TNNI2P48788 182 aa19.24■□□□□ 0.67
SYNE3-202ENST00000553340 ERVK-9P63128 1117 aa19.24■□□□□ 0.67
SYNE3-202ENST00000553340 GRIK5Q16478 980 aa19.24■□□□□ 0.67
SYNE3-202ENST00000553340 IFI16Q16666 785 aaKnown RBP19.24■□□□□ 0.67
SYNE3-202ENST00000553340 RNF187Q5TA31 235 aaPredicted RBP19.24■□□□□ 0.67
SYNE3-202ENST00000553340 NELFCDQ8IXH7 590 aa19.24■□□□□ 0.67
SYNE3-202ENST00000553340 CCDC65Q8IXS2 484 aa19.24■□□□□ 0.67
SYNE3-202ENST00000553340 CENPHQ9H3R5 247 aa19.24■□□□□ 0.67
SYNE3-202ENST00000553340 KANSL2Q9H9L4 492 aa19.24■□□□□ 0.67
SYNE3-202ENST00000553340 MARCH6O60337 910 aa19.24■□□□□ 0.67
SYNE3-202ENST00000553340 KIF4AO95239 1232 aa19.24■□□□□ 0.67
SYNE3-202ENST00000553340 HSD17B3P37058 310 aa19.24■□□□□ 0.67
SYNE3-202ENST00000553340 USP11P51784 963 aa19.24■□□□□ 0.67
SYNE3-202ENST00000553340 SETDB2Q96T68 719 aa19.24■□□□□ 0.67
SYNE3-202ENST00000553340 NT5C3AQ9H0P0 336 aa19.24■□□□□ 0.67
SYNE3-202ENST00000553340 GANQ9H2C0 597 aa19.24■□□□□ 0.67
SYNE3-202ENST00000553340 RGL2O15211 777 aa19.23■□□□□ 0.67
SYNE3-202ENST00000553340 HDLBPQ00341 1268 aaKnown RBP19.23■□□□□ 0.67
SYNE3-202ENST00000553340 SCFD2Q8WU76 684 aa19.23■□□□□ 0.67
SYNE3-202ENST00000553340 RTFDC1Q9BY42 306 aaPredicted RBP19.23■□□□□ 0.67
SYNE3-202ENST00000553340 ANKIB1Q9P2G1 1089 aa19.23■□□□□ 0.67
SYNE3-202ENST00000553340 FRMPD2Q68DX3 1309 aaPredicted RBP19.23■□□□□ 0.67
SYNE3-202ENST00000553340 PDHBP11177 359 aa19.23■□□□□ 0.67
SYNE3-202ENST00000553340 BTDP43251 543 aa19.23■□□□□ 0.67
SYNE3-202ENST00000553340 LINC00116Q8NCU8 138 aa19.23■□□□□ 0.67
SYNE3-202ENST00000553340 ACTRT1Q8TDG2 376 aa19.23■□□□□ 0.67
SYNE3-202ENST00000553340 MYCBPQ99417 103 aaPredicted RBP19.23■□□□□ 0.67
SYNE3-202ENST00000553340 FGFBP2Q9BYJ0 223 aa19.23■□□□□ 0.67
SYNE3-202ENST00000553340 DDX25Q9UHL0 483 aaKnown RBP19.23■□□□□ 0.67
SYNE3-202ENST00000553340 KDM3AQ9Y4C1 1321 aa19.23■□□□□ 0.67
SYNE3-202ENST00000553340 CEP104O60308 925 aa19.22■□□□□ 0.67
SYNE3-202ENST00000553340 ECHS1P30084 290 aa19.22■□□□□ 0.67
SYNE3-202ENST00000553340 PTK2Q05397 1052 aa19.22■□□□□ 0.67
SYNE3-202ENST00000553340 ADAM9Q13443 819 aa19.22■□□□□ 0.67
SYNE3-202ENST00000553340 CALR3Q96L12 384 aaKnown RBP19.22■□□□□ 0.67
SYNE3-202ENST00000553340 ZNF335Q9H4Z2 1342 aaPredicted RBP19.22■□□□□ 0.67
SYNE3-202ENST00000553340 KCNH2Q12809 1159 aa19.22■□□□□ 0.67
SYNE3-202ENST00000553340 RUFY4Q6ZNE9 571 aa19.22■□□□□ 0.67
SYNE3-202ENST00000553340 TEX11Q8IYF3 940 aa19.22■□□□□ 0.67
SYNE3-202ENST00000553340 CCDC24Q8N4L8 307 aa19.22■□□□□ 0.67
SYNE3-202ENST00000553340 PPANQ9NQ55 473 aaKnown RBP19.22■□□□□ 0.67
SYNE3-202ENST00000553340 PCDHA12Q9UN75 941 aa19.22■□□□□ 0.67
SYNE3-202ENST00000553340 BZW2Q9Y6E2 419 aaKnown RBP19.22■□□□□ 0.67
SYNE3-202ENST00000553340 CTNNA1P35221 906 aaKnown RBP19.21■□□□□ 0.67
SYNE3-202ENST00000553340 NOVP48745 357 aa19.21■□□□□ 0.67
SYNE3-202ENST00000553340 IFT88Q13099 833 aa19.21■□□□□ 0.67
SYNE3-202ENST00000553340 BIRC3Q13489 604 aa19.21■□□□□ 0.67
SYNE3-202ENST00000553340 HERC4Q5GLZ8 1057 aaPredicted RBP19.21■□□□□ 0.67
SYNE3-202ENST00000553340 HAS1Q92839 578 aa19.21■□□□□ 0.67
SYNE3-202ENST00000553340 SPAG5Q96R06 1193 aa19.21■□□□□ 0.67
SYNE3-202ENST00000553340 KCTD10Q9H3F6 313 aa19.21■□□□□ 0.67
SYNE3-202ENST00000553340 EMILIN3Q9NT22 766 aa19.21■□□□□ 0.67
SYNE3-202ENST00000553340 PCDHA2Q9Y5H9 948 aa19.21■□□□□ 0.67
SYNE3-202ENST00000553340 COL5A3P25940 1745 aaPredicted RBP19.21■□□□□ 0.67
SYNE3-202ENST00000553340 H0YGN5 161 aa19.21■□□□□ 0.67
SYNE3-202ENST00000553340 PGRMC1O00264 195 aaKnown RBP19.21■□□□□ 0.67
SYNE3-202ENST00000553340 CETN3O15182 167 aa19.21■□□□□ 0.67
SYNE3-202ENST00000553340 ASPRV1Q53RT3 343 aa19.21■□□□□ 0.67
SYNE3-202ENST00000553340 TPTE2Q6XPS3 522 aa19.21■□□□□ 0.67
SYNE3-202ENST00000553340 PPP4R3CPQ6ZMV5 832 aa19.21■□□□□ 0.67
SYNE3-202ENST00000553340 SCFD1Q8WVM8 642 aa19.21■□□□□ 0.67
SYNE3-202ENST00000553340 VCPKMTQ9H867 229 aa19.21■□□□□ 0.67
SYNE3-202ENST00000553340 NFS1Q9Y697 457 aa19.21■□□□□ 0.67
SYNE3-202ENST00000553340 DDX60LQ5H9U9 1706 aaKnown RBP19.21■□□□□ 0.67
SYNE3-202ENST00000553340 ATAD5Q96QE3 1844 aa19.21■□□□□ 0.67
SYNE3-202ENST00000553340 SART1O43290 800 aaKnown RBP19.21■□□□□ 0.66
SYNE3-202ENST00000553340 ACTN3Q08043 901 aaPredicted RBP19.21■□□□□ 0.66
SYNE3-202ENST00000553340 DDR1Q08345 913 aa19.21■□□□□ 0.66
SYNE3-202ENST00000553340 PLCB4Q15147 1175 aa19.21■□□□□ 0.66
SYNE3-202ENST00000553340 EDRF1Q3B7T1 1238 aa19.21■□□□□ 0.66
SYNE3-202ENST00000553340 HYIQ5T013 277 aa19.21■□□□□ 0.66
SYNE3-202ENST00000553340 ZNF804AQ7Z570 1209 aa19.21■□□□□ 0.66
SYNE3-202ENST00000553340 IRF2BP2Q7Z5L9 587 aa19.21■□□□□ 0.66
SYNE3-202ENST00000553340 C3orf20Q8ND61 904 aa19.21■□□□□ 0.66
SYNE3-202ENST00000553340 CYFIP2Q96F07 1278 aa19.21■□□□□ 0.66
SYNE3-202ENST00000553340 LEMD3Q9Y2U8 911 aa19.21■□□□□ 0.66
SYNE3-202ENST00000553340 THRAP3Q9Y2W1 955 aaKnown RBP19.21■□□□□ 0.66
SYNE3-202ENST00000553340 MYH4Q9Y623 1939 aa19.2■□□□□ 0.66
SYNE3-202ENST00000553340 GMNCA6NCL1 334 aa19.2■□□□□ 0.66
SYNE3-202ENST00000553340 E9PMD0 336 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 130.7 ms