RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 FRMPD4Q14CM0 1322 aa9.77□□□□□ -0.85
USP28-215ENST00000545608 KIAA1217Q5T5P2 1943 aa9.76□□□□□ -0.85
USP28-215ENST00000545608 TRIP12Q14669 1992 aaPredicted RBP9.76□□□□□ -0.85
USP28-215ENST00000545608 UNC80Q8N2C7 3258 aa9.76□□□□□ -0.85
USP28-215ENST00000545608 C17orf102A2RUQ5 167 aa9.76□□□□□ -0.85
USP28-215ENST00000545608 RSPH10B2B2RC85 870 aa9.76□□□□□ -0.85
USP28-215ENST00000545608 SH2B2O14492 632 aaPredicted RBP9.76□□□□□ -0.85
USP28-215ENST00000545608 MEIS2O14770 477 aa9.76□□□□□ -0.85
USP28-215ENST00000545608 TREHO43280 583 aa9.76□□□□□ -0.85
USP28-215ENST00000545608 MAP3K7O43318 606 aa9.76□□□□□ -0.85
USP28-215ENST00000545608 FIBPO43427 364 aa9.76□□□□□ -0.85
USP28-215ENST00000545608 PRC1O43663 620 aa9.76□□□□□ -0.85
USP28-215ENST00000545608 LGR5O75473 907 aa9.76□□□□□ -0.85
USP28-215ENST00000545608 STAM2O75886 525 aa9.76□□□□□ -0.85
USP28-215ENST00000545608 DDAH1O94760 285 aa9.76□□□□□ -0.85
USP28-215ENST00000545608 GJB5O95377 273 aa9.76□□□□□ -0.85
USP28-215ENST00000545608 PLEKHA8P1O95397 391 aa9.76□□□□□ -0.85
USP28-215ENST00000545608 RSPH10BP0C881 870 aa9.76□□□□□ -0.85
USP28-215ENST00000545608 SMIM10L2AP0DMW4 78 aa9.76□□□□□ -0.85
USP28-215ENST00000545608 SMIM10L2BP0DMW5 78 aa9.76□□□□□ -0.85
USP28-215ENST00000545608 BMP1P13497 986 aa9.76□□□□□ -0.85
USP28-215ENST00000545608 RXRAP19793 462 aa9.76□□□□□ -0.85
USP28-215ENST00000545608 SMARCA1P28370 1054 aa9.76□□□□□ -0.85
USP28-215ENST00000545608 HOXC8P31273 242 aa9.76□□□□□ -0.85
USP28-215ENST00000545608 THPOP40225 353 aa9.76□□□□□ -0.85
USP28-215ENST00000545608 IKBKEQ14164 716 aa9.76□□□□□ -0.85
USP28-215ENST00000545608 NEDD9Q14511 834 aa9.76□□□□□ -0.85
USP28-215ENST00000545608 GNPTABQ3T906 1256 aa9.76□□□□□ -0.85
USP28-215ENST00000545608 FAM117BQ6P1L5 589 aa9.76□□□□□ -0.85
USP28-215ENST00000545608 CASC1Q6TDU7 716 aa9.76□□□□□ -0.85
USP28-215ENST00000545608 METTL7BQ6UX53 244 aa9.76□□□□□ -0.85
USP28-215ENST00000545608 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.76□□□□□ -0.85
USP28-215ENST00000545608 CYFIP1Q7L576 1253 aa9.76□□□□□ -0.85
USP28-215ENST00000545608 RAB11FIP4Q86YS3 637 aa9.76□□□□□ -0.85
USP28-215ENST00000545608 CMTR1Q8N1G2 835 aaKnown RBP9.76□□□□□ -0.85
USP28-215ENST00000545608 SRBD1Q8N5C6 995 aaKnown RBP9.76□□□□□ -0.85
USP28-215ENST00000545608 CTCFLQ8NI51 663 aaPredicted RBP9.76□□□□□ -0.85
USP28-215ENST00000545608 SMARCC2Q8TAQ2 1214 aa9.76□□□□□ -0.85
USP28-215ENST00000545608 ATP6V0A1Q93050 837 aa9.76□□□□□ -0.85
USP28-215ENST00000545608 RRP36Q96EU6 259 aaKnown RBP9.76□□□□□ -0.85
USP28-215ENST00000545608 NECAB3Q96P71 396 aaPredicted RBP9.76□□□□□ -0.85
USP28-215ENST00000545608 UHRF1Q96T88 793 aaPredicted RBP9.76□□□□□ -0.85
USP28-215ENST00000545608 GPR20Q99678 358 aa9.76□□□□□ -0.85
USP28-215ENST00000545608 SPZ1Q9BXG8 430 aa9.76□□□□□ -0.85
USP28-215ENST00000545608 PRRC2BQ5JSZ5 2229 aaKnown RBP9.76□□□□□ -0.85
USP28-215ENST00000545608 TANC1Q9C0D5 1861 aa9.75□□□□□ -0.85
USP28-215ENST00000545608 NOP56O00567 594 aaKnown RBP9.75□□□□□ -0.85
USP28-215ENST00000545608 SLC27A2O14975 620 aa9.75□□□□□ -0.85
USP28-215ENST00000545608 EFCAB14O75071 495 aa9.75□□□□□ -0.85
USP28-215ENST00000545608 KIF5BP33176 963 aa9.75□□□□□ -0.85
USP28-215ENST00000545608 MCM5P33992 734 aa9.75□□□□□ -0.85
USP28-215ENST00000545608 GNAQP50148 359 aa9.75□□□□□ -0.85
USP28-215ENST00000545608 KCNQ1P51787 676 aa9.75□□□□□ -0.85
USP28-215ENST00000545608 NECTIN1Q15223 517 aa9.75□□□□□ -0.85
USP28-215ENST00000545608 UTP14CQ5TAP6 766 aaKnown RBP9.75□□□□□ -0.85
USP28-215ENST00000545608 PCNX4Q63HM2 1172 aa9.75□□□□□ -0.85
USP28-215ENST00000545608 NFXL1Q6ZNB6 911 aa9.75□□□□□ -0.85
USP28-215ENST00000545608 TRIM50Q86XT4 487 aa9.75□□□□□ -0.85
USP28-215ENST00000545608 CUL5Q93034 780 aa9.75□□□□□ -0.85
USP28-215ENST00000545608 TMEM87BQ96K49 555 aa9.75□□□□□ -0.85
USP28-215ENST00000545608 RAD9AQ99638 391 aa9.75□□□□□ -0.85
USP28-215ENST00000545608 LZTS2Q9BRK4 669 aa9.75□□□□□ -0.85
USP28-215ENST00000545608 ESYT1Q9BSJ8 1104 aa9.75□□□□□ -0.85
USP28-215ENST00000545608 MTA3Q9BTC8 594 aa9.75□□□□□ -0.85
USP28-215ENST00000545608 USP26Q9BXU7 913 aa9.75□□□□□ -0.85
USP28-215ENST00000545608 LRRC2Q9BYS8 371 aa9.75□□□□□ -0.85
USP28-215ENST00000545608 SUGCTQ9HAC7 445 aa9.75□□□□□ -0.85
USP28-215ENST00000545608 SETD4Q9NVD3 440 aa9.75□□□□□ -0.85
USP28-215ENST00000545608 MYH6P13533 1939 aa9.75□□□□□ -0.85
USP28-215ENST00000545608 hCG_1642624A0A1W2PR95 340 aa9.74□□□□□ -0.85
USP28-215ENST00000545608 LINC01553A4QN01 128 aa9.74□□□□□ -0.85
USP28-215ENST00000545608 CCDC69A6NI79 296 aa9.74□□□□□ -0.85
USP28-215ENST00000545608 PIK3CDO00329 1044 aa9.74□□□□□ -0.85
USP28-215ENST00000545608 ATP9AO75110 1047 aa9.74□□□□□ -0.85
USP28-215ENST00000545608 CTSHP09668 335 aa9.74□□□□□ -0.85
USP28-215ENST00000545608 LIFRP42702 1097 aa9.74□□□□□ -0.85
USP28-215ENST00000545608 ERVK-21P61565 698 aa9.74□□□□□ -0.85
USP28-215ENST00000545608 ADAM17P78536 824 aa9.74□□□□□ -0.85
USP28-215ENST00000545608 SP4Q02446 784 aa9.74□□□□□ -0.85
USP28-215ENST00000545608 PLEKHG4Q58EX7 1191 aa9.74□□□□□ -0.85
USP28-215ENST00000545608 CREB3L3Q68CJ9 461 aa9.74□□□□□ -0.85
USP28-215ENST00000545608 SKAP1Q86WV1 359 aa9.74□□□□□ -0.85
USP28-215ENST00000545608 HOMEZQ8IX15 550 aa9.74□□□□□ -0.85
USP28-215ENST00000545608 TMTC2Q8N394 836 aa9.74□□□□□ -0.85
USP28-215ENST00000545608 CCDC82Q8N4S0 544 aa9.74□□□□□ -0.85
USP28-215ENST00000545608 GDPD5Q8WTR4 605 aa9.74□□□□□ -0.85
USP28-215ENST00000545608 SENP7Q9BQF6 1050 aa9.74□□□□□ -0.85
USP28-215ENST00000545608 SEC63Q9UGP8 760 aaKnown RBP9.74□□□□□ -0.85
USP28-215ENST00000545608 MTUS1Q9ULD2 1270 aa9.74□□□□□ -0.85
USP28-215ENST00000545608 MYH7BA7E2Y1 1941 aa9.74□□□□□ -0.85
USP28-215ENST00000545608 KCNA2P16389 499 aa9.73□□□□□ -0.85
USP28-215ENST00000545608 ITGB5P18084 799 aa9.73□□□□□ -0.85
USP28-215ENST00000545608 UBE2SQ16763 222 aa9.73□□□□□ -0.85
USP28-215ENST00000545608 AAK1Q2M2I8 961 aa9.73□□□□□ -0.85
USP28-215ENST00000545608 TYW1BQ6NUM6 668 aa9.73□□□□□ -0.85
USP28-215ENST00000545608 XRRA1Q6P2D8 792 aa9.73□□□□□ -0.85
USP28-215ENST00000545608 NLRX1Q86UT6 975 aa9.73□□□□□ -0.85
USP28-215ENST00000545608 MYOCDQ8IZQ8 938 aa9.73□□□□□ -0.85
USP28-215ENST00000545608 TGS1Q96RS0 853 aaKnown RBP9.73□□□□□ -0.85
USP28-215ENST00000545608 PSTPIP2Q9H939 334 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 93.3 ms