RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 BACH1O14867 736 aa9.64□□□□□ -0.87
LIMCH1-209ENST00000509277 FOXN1O15353 648 aa9.64□□□□□ -0.87
LIMCH1-209ENST00000509277 KRT18P05783 430 aaKnown RBP9.64□□□□□ -0.87
LIMCH1-209ENST00000509277 NR3C2P08235 984 aa9.64□□□□□ -0.87
LIMCH1-209ENST00000509277 STAT6P42226 847 aa9.64□□□□□ -0.87
LIMCH1-209ENST00000509277 PPP2R3AQ06190 1150 aa9.64□□□□□ -0.87
LIMCH1-209ENST00000509277 CRHR2Q13324 411 aa9.64□□□□□ -0.87
LIMCH1-209ENST00000509277 LRCH2Q5VUJ6 765 aa9.64□□□□□ -0.87
LIMCH1-209ENST00000509277 SHC4Q6S5L8 630 aa9.64□□□□□ -0.87
LIMCH1-209ENST00000509277 TPH2Q8IWU9 490 aa9.64□□□□□ -0.87
LIMCH1-209ENST00000509277 ZNF713Q8N859 430 aaPredicted RBP9.64□□□□□ -0.87
LIMCH1-209ENST00000509277 MTMR8Q96EF0 704 aa9.64□□□□□ -0.87
LIMCH1-209ENST00000509277 JPH2Q9BR39 696 aaPredicted RBP9.64□□□□□ -0.87
LIMCH1-209ENST00000509277 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.64□□□□□ -0.87
LIMCH1-209ENST00000509277 SERTAD1Q9UHV2 236 aa9.64□□□□□ -0.87
LIMCH1-209ENST00000509277 NEBLO76041 1014 aa9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 FOSP01100 380 aaPredicted RBP9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 CCT6AP40227 531 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 PEX19P40855 299 aa9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 SH3D19Q5HYK7 790 aa9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 KLHL10Q6JEL2 608 aa9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 CEP57L1Q8IYX8 460 aa9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 C12orf42Q96LP6 360 aa9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 NCAPGQ9BPX3 1015 aa9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 BEGAINQ9BUH8 593 aa9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 DOCK1Q14185 1865 aa9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 MANSC4A6NHS7 340 aaPredicted RBP9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 COBLO75128 1261 aa9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 ZNF202O95125 648 aa9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 MTMR1Q13613 665 aa9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 PTPAQ15257 358 aa9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 LONRF3Q496Y0 759 aa9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 PRAMEF19Q5SWL8 479 aa9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 FBXW10Q5XX13 1052 aa9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 DYMQ7RTS9 669 aa9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 FBXO16Q8IX29 292 aaPredicted RBP9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 TNFRSF25Q93038 417 aa9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 GLT8D2Q9H1C3 349 aa9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 BCAS3Q9H6U6 928 aa9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 CYP39A1Q9NYL5 469 aa9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 MAPK8IP1Q9UQF2 711 aa9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 TULP2O00295 520 aa9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 ADORA2AP29274 412 aa9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 CTTNQ14247 550 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 PPP1R18Q6NYC8 613 aa9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 POTEEQ6S8J3 1075 aa9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 CABP7Q86V35 215 aa9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 NSUN6Q8TEA1 469 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 NOC3LQ8WTT2 800 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 ZFYVE28Q9HCC9 887 aa9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 RGL1Q9NZL6 768 aa9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 RABGAP1Q9Y3P9 1069 aa9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 TLL2Q9Y6L7 1015 aa9.63□□□□□ -0.87
LIMCH1-209ENST00000509277 CUTAO60888 179 aa9.62□□□□□ -0.87
LIMCH1-209ENST00000509277 ZMYND10O75800 440 aa9.62□□□□□ -0.87
LIMCH1-209ENST00000509277 TFRCP02786 760 aaKnown RBP9.62□□□□□ -0.87
LIMCH1-209ENST00000509277 ZBTB48P10074 688 aaPredicted RBP9.62□□□□□ -0.87
LIMCH1-209ENST00000509277 AP3B2Q13367 1082 aa9.62□□□□□ -0.87
LIMCH1-209ENST00000509277 PNOCQ13519 176 aa9.62□□□□□ -0.87
LIMCH1-209ENST00000509277 RNF187Q5TA31 235 aaPredicted RBP9.62□□□□□ -0.87
LIMCH1-209ENST00000509277 RRAGBQ5VZM2 374 aa9.62□□□□□ -0.87
LIMCH1-209ENST00000509277 KRT79Q5XKE5 535 aa9.62□□□□□ -0.87
LIMCH1-209ENST00000509277 ADALQ6DHV7 355 aa9.62□□□□□ -0.87
LIMCH1-209ENST00000509277 XPO4Q9C0E2 1151 aaKnown RBP9.62□□□□□ -0.87
LIMCH1-209ENST00000509277 FBXO2Q9UK22 296 aaPredicted RBP9.62□□□□□ -0.87
LIMCH1-209ENST00000509277 ESYT2A0FGR8 921 aa9.62□□□□□ -0.87
LIMCH1-209ENST00000509277 SASH3O75995 380 aa9.62□□□□□ -0.87
LIMCH1-209ENST00000509277 CEP55Q53EZ4 464 aa9.62□□□□□ -0.87
LIMCH1-209ENST00000509277 NLRX1Q86UT6 975 aa9.62□□□□□ -0.87
LIMCH1-209ENST00000509277 IFNL1Q8IU54 200 aa9.62□□□□□ -0.87
LIMCH1-209ENST00000509277 GPIHBP1Q8IV16 184 aa9.62□□□□□ -0.87
LIMCH1-209ENST00000509277 PIGOQ8TEQ8 1089 aa9.62□□□□□ -0.87
LIMCH1-209ENST00000509277 CALML4Q96GE6 196 aa9.62□□□□□ -0.87
LIMCH1-209ENST00000509277 PPP1R13BQ96KQ4 1090 aa9.62□□□□□ -0.87
LIMCH1-209ENST00000509277 PDCD2LQ9BRP1 358 aa9.62□□□□□ -0.87
LIMCH1-209ENST00000509277 IRX2Q9BZI1 471 aaPredicted RBP9.62□□□□□ -0.87
LIMCH1-209ENST00000509277 ARHGAP39Q9C0H5 1083 aa9.62□□□□□ -0.87
LIMCH1-209ENST00000509277 DNAH12Q6ZR08 3092 aa9.62□□□□□ -0.87
LIMCH1-209ENST00000509277 MARK3P27448 753 aa9.62□□□□□ -0.87
LIMCH1-209ENST00000509277 APLP1P51693 650 aa9.62□□□□□ -0.87
LIMCH1-209ENST00000509277 SREBF2Q12772 1141 aa9.62□□□□□ -0.87
LIMCH1-209ENST00000509277 CCDC91Q7Z6B0 441 aa9.62□□□□□ -0.87
LIMCH1-209ENST00000509277 RAB34Q9BZG1 259 aa9.62□□□□□ -0.87
LIMCH1-209ENST00000509277 CXorf56Q9H5V9 222 aa9.62□□□□□ -0.87
LIMCH1-209ENST00000509277 PXMP2Q9NR77 195 aa9.62□□□□□ -0.87
LIMCH1-209ENST00000509277 TBC1D7Q9P0N9 293 aa9.62□□□□□ -0.87
LIMCH1-209ENST00000509277 WDR90Q96KV7 1748 aa9.62□□□□□ -0.87
LIMCH1-209ENST00000509277 BRCA2P51587 3418 aa9.62□□□□□ -0.87
LIMCH1-209ENST00000509277 POTEB3A0JP26 581 aa9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 EIF4E1BA6NMX2 242 aaKnown RBP9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 IPO5O00410 1097 aaKnown RBP9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 MSH4O15457 936 aa9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 HOXA7P31268 230 aaPredicted RBP9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 VEGFBP49765 207 aa9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 PGM5Q15124 567 aa9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 IL17AQ16552 155 aa9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 POTEBQ6S5H4 581 aa9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 CYFIP1Q7L576 1253 aa9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 MB21D1Q8N884 522 aa9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 DAGLBQ8NCG7 672 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 102.1 ms