RNA–Protein interactions for RNA: ENST00000494334.1

COL1A1-208, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 2

Gene COL1A1, Length 396 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-208ENST00000494334 RIT2Q99578 217 aa15.34■□□□□ 0.05
COL1A1-208ENST00000494334 TUT1Q9H6E5 874 aaKnown RBP15.34■□□□□ 0.05
COL1A1-208ENST00000494334 FOXD4L1Q9NU39 408 aa15.34■□□□□ 0.05
COL1A1-208ENST00000494334 ZMYND8Q9ULU4 1186 aaPredicted RBP15.34■□□□□ 0.05
COL1A1-208ENST00000494334 ALPK3Q96L96 1907 aa15.34■□□□□ 0.05
COL1A1-208ENST00000494334 H0YGN5 161 aa15.33■□□□□ 0.04
COL1A1-208ENST00000494334 H3BQV1 296 aa15.33■□□□□ 0.04
COL1A1-208ENST00000494334 B4GALT4O60513 344 aa15.33■□□□□ 0.04
COL1A1-208ENST00000494334 PSMD10O75832 226 aa15.33■□□□□ 0.04
COL1A1-208ENST00000494334 CD4P01730 458 aa15.33■□□□□ 0.04
COL1A1-208ENST00000494334 CLTBP09497 229 aa15.33■□□□□ 0.04
COL1A1-208ENST00000494334 SYN1P17600 705 aa15.33■□□□□ 0.04
COL1A1-208ENST00000494334 PTPN11Q06124 597 aaPredicted RBP15.33■□□□□ 0.04
COL1A1-208ENST00000494334 FAM47CQ5HY64 1035 aa15.33■□□□□ 0.04
COL1A1-208ENST00000494334 ABHD15Q6UXT9 468 aa15.33■□□□□ 0.04
COL1A1-208ENST00000494334 SH3RF1Q7Z6J0 888 aa15.33■□□□□ 0.04
COL1A1-208ENST00000494334 NOSTRINQ8IVI9 506 aa15.33■□□□□ 0.04
COL1A1-208ENST00000494334 PCYT2Q99447 389 aa15.33■□□□□ 0.04
COL1A1-208ENST00000494334 KCNMB3Q9NPA1 279 aa15.33■□□□□ 0.04
COL1A1-208ENST00000494334 PDLIM7Q9NR12 457 aa15.33■□□□□ 0.04
COL1A1-208ENST00000494334 PCDH10Q9P2E7 1040 aa15.33■□□□□ 0.04
COL1A1-208ENST00000494334 IGKV6D-21A0A0A0MT36 114 aa15.32■□□□□ 0.04
COL1A1-208ENST00000494334 TRIM43BA6NCK2 446 aa15.32■□□□□ 0.04
COL1A1-208ENST00000494334 TLR3O15455 904 aaKnown RBP15.32■□□□□ 0.04
COL1A1-208ENST00000494334 LGR5O75473 907 aa15.32■□□□□ 0.04
COL1A1-208ENST00000494334 ATP2B1P20020 1258 aa15.32■□□□□ 0.04
COL1A1-208ENST00000494334 KRT76Q01546 638 aa15.32■□□□□ 0.04
COL1A1-208ENST00000494334 LRCH2Q5VUJ6 765 aa15.32■□□□□ 0.04
COL1A1-208ENST00000494334 ZNF746Q6NUN9 644 aaPredicted RBP15.32■□□□□ 0.04
COL1A1-208ENST00000494334 SESTD1Q86VW0 696 aa15.32■□□□□ 0.04
COL1A1-208ENST00000494334 POTEDQ86YR6 584 aa15.32■□□□□ 0.04
COL1A1-208ENST00000494334 C7orf31Q8N865 590 aa15.32■□□□□ 0.04
COL1A1-208ENST00000494334 HAS1Q92839 578 aa15.32■□□□□ 0.04
COL1A1-208ENST00000494334 TRIM43Q96BQ3 446 aaPredicted RBP15.32■□□□□ 0.04
COL1A1-208ENST00000494334 TEKT3Q9BXF9 490 aa15.32■□□□□ 0.04
COL1A1-208ENST00000494334 TRPV6Q9H1D0 765 aa15.32■□□□□ 0.04
COL1A1-208ENST00000494334 PRDM5Q9NQX1 630 aaPredicted RBP15.32■□□□□ 0.04
COL1A1-208ENST00000494334 TRMT13Q9NUP7 481 aaKnown RBP15.32■□□□□ 0.04
COL1A1-208ENST00000494334 TMEM39AQ9NV64 488 aa15.32■□□□□ 0.04
COL1A1-208ENST00000494334 HDAC6Q9UBN7 1215 aa15.32■□□□□ 0.04
COL1A1-208ENST00000494334 SCN10AQ9Y5Y9 1956 aa15.32■□□□□ 0.04
COL1A1-208ENST00000494334 DOCK5Q9H7D0 1870 aa15.31■□□□□ 0.04
COL1A1-208ENST00000494334 TBX3O15119 743 aa15.31■□□□□ 0.04
COL1A1-208ENST00000494334 GAS7O60861 476 aa15.31■□□□□ 0.04
COL1A1-208ENST00000494334 SUPT20HL2P0C7V6 817 aa15.31■□□□□ 0.04
COL1A1-208ENST00000494334 MCTP1Q6DN14 999 aa15.31■□□□□ 0.04
COL1A1-208ENST00000494334 MIS18BP1Q6P0N0 1132 aa15.31■□□□□ 0.04
COL1A1-208ENST00000494334 B3GNT9Q6UX72 402 aa15.31■□□□□ 0.04
COL1A1-208ENST00000494334 SMAP1Q8IYB5 467 aaPredicted RBP15.31■□□□□ 0.04
COL1A1-208ENST00000494334 GLG1Q92896 1179 aa15.31■□□□□ 0.04
COL1A1-208ENST00000494334 FAM20AQ96MK3 541 aa15.31■□□□□ 0.04
COL1A1-208ENST00000494334 UNC45AQ9H3U1 944 aa15.31■□□□□ 0.04
COL1A1-208ENST00000494334 RNPEPQ9H4A4 650 aa15.31■□□□□ 0.04
COL1A1-208ENST00000494334 SMARCAD1Q9H4L7 1026 aa15.31■□□□□ 0.04
COL1A1-208ENST00000494334 AZI2Q9H6S1 392 aa15.31■□□□□ 0.04
COL1A1-208ENST00000494334 PRKAG2Q9UGJ0 569 aa15.31■□□□□ 0.04
COL1A1-208ENST00000494334 GTF2IRD1Q9UHL9 959 aa15.31■□□□□ 0.04
COL1A1-208ENST00000494334 ZNF215Q9UL58 517 aaPredicted RBP15.31■□□□□ 0.04
COL1A1-208ENST00000494334 PCDHA10Q9Y5I2 948 aa15.31■□□□□ 0.04
COL1A1-208ENST00000494334 EMSYQ7Z589 1322 aa15.31■□□□□ 0.04
COL1A1-208ENST00000494334 KIAA0355O15063 1070 aa15.3■□□□□ 0.04
COL1A1-208ENST00000494334 ITGB8P26012 769 aa15.3■□□□□ 0.04
COL1A1-208ENST00000494334 STAT5BP51692 787 aa15.3■□□□□ 0.04
COL1A1-208ENST00000494334 HIC1Q14526 733 aa15.3■□□□□ 0.04
COL1A1-208ENST00000494334 PDE4DIPQ5VU43 2346 aa15.3■□□□□ 0.04
COL1A1-208ENST00000494334 GDF6Q6KF10 455 aaPredicted RBP15.3■□□□□ 0.04
COL1A1-208ENST00000494334 SWSAP1Q6NVH7 229 aa15.3■□□□□ 0.04
COL1A1-208ENST00000494334 PLPPR4Q7Z2D5 763 aa15.3■□□□□ 0.04
COL1A1-208ENST00000494334 CCDC60Q8IWA6 550 aaPredicted RBP15.3■□□□□ 0.04
COL1A1-208ENST00000494334 ERAP1Q9NZ08 941 aa15.3■□□□□ 0.04
COL1A1-208ENST00000494334 TCEAL9Q9UHQ7 104 aa15.3■□□□□ 0.04
COL1A1-208ENST00000494334 TBX21Q9UL17 535 aa15.3■□□□□ 0.04
COL1A1-208ENST00000494334 WDR64B1ANS9 1081 aa15.29■□□□□ 0.04
COL1A1-208ENST00000494334 BACH1O14867 736 aa15.29■□□□□ 0.04
COL1A1-208ENST00000494334 CHMP2AO43633 222 aa15.29■□□□□ 0.04
COL1A1-208ENST00000494334 MARCH6O60337 910 aa15.29■□□□□ 0.04
COL1A1-208ENST00000494334 NEMFO60524 1076 aa15.29■□□□□ 0.04
COL1A1-208ENST00000494334 SMIM10L2AP0DMW4 78 aa15.29■□□□□ 0.04
COL1A1-208ENST00000494334 SMIM10L2BP0DMW5 78 aa15.29■□□□□ 0.04
COL1A1-208ENST00000494334 PDCP20941 246 aa15.29■□□□□ 0.04
COL1A1-208ENST00000494334 SYT1P21579 422 aa15.29■□□□□ 0.04
COL1A1-208ENST00000494334 MARK3P27448 753 aa15.29■□□□□ 0.04
COL1A1-208ENST00000494334 MCM7P33993 719 aa15.29■□□□□ 0.04
COL1A1-208ENST00000494334 TRAPPC10P48553 1259 aa15.29■□□□□ 0.04
COL1A1-208ENST00000494334 TOB1P50616 345 aaPredicted RBP15.29■□□□□ 0.04
COL1A1-208ENST00000494334 ZNF200P98182 395 aaPredicted RBP15.29■□□□□ 0.04
COL1A1-208ENST00000494334 ZNF174Q15697 407 aa15.29■□□□□ 0.04
COL1A1-208ENST00000494334 PTGISQ16647 500 aa15.29■□□□□ 0.04
COL1A1-208ENST00000494334 TTC38Q5R3I4 469 aa15.29■□□□□ 0.04
COL1A1-208ENST00000494334 PRPF38BQ5VTL8 546 aaKnown RBP15.29■□□□□ 0.04
COL1A1-208ENST00000494334 AFAP1L1Q8TED9 768 aa15.29■□□□□ 0.04
COL1A1-208ENST00000494334 CTAGE1Q96RT6 745 aa15.29■□□□□ 0.04
COL1A1-208ENST00000494334 ZNF302Q9NR11 478 aa15.29■□□□□ 0.04
COL1A1-208ENST00000494334 DISC1Q9NRI5 854 aa15.29■□□□□ 0.04
COL1A1-208ENST00000494334 NOL7Q9UMY1 257 aaKnown RBP15.29■□□□□ 0.04
COL1A1-208ENST00000494334 SAMM50Q9Y512 469 aa15.29■□□□□ 0.04
COL1A1-208ENST00000494334 C17orf102A2RUQ5 167 aa15.28■□□□□ 0.04
COL1A1-208ENST00000494334 BAG4O95429 457 aaKnown RBP15.28■□□□□ 0.04
COL1A1-208ENST00000494334 PSAPP07602 524 aa15.28■□□□□ 0.04
COL1A1-208ENST00000494334 CYP2C9P11712 490 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms