RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 FOXO4P98177 505 aa6.93□□□□□ -1.3
HMGB1P38-201ENST00000490557 PAN2Q504Q3 1202 aaKnown RBP6.93□□□□□ -1.3
HMGB1P38-201ENST00000490557 HHIPL2Q6UWX4 724 aa6.93□□□□□ -1.3
HMGB1P38-201ENST00000490557 B3GNT8Q7Z7M8 397 aa6.93□□□□□ -1.3
HMGB1P38-201ENST00000490557 SH3RF2Q8TEC5 729 aa6.93□□□□□ -1.3
HMGB1P38-201ENST00000490557 LEO1Q8WVC0 666 aaPredicted RBP6.93□□□□□ -1.3
HMGB1P38-201ENST00000490557 BOCQ9BWV1 1114 aa6.93□□□□□ -1.3
HMGB1P38-201ENST00000490557 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.93□□□□□ -1.3
HMGB1P38-201ENST00000490557 IFT57Q9NWB7 429 aa6.93□□□□□ -1.3
HMGB1P38-201ENST00000490557 SMG5Q9UPR3 1016 aaKnown RBP6.93□□□□□ -1.3
HMGB1P38-201ENST00000490557 PTPDC1A2A3K4 754 aa6.92□□□□□ -1.3
HMGB1P38-201ENST00000490557 PRAMEF25A6NGN4 478 aa6.92□□□□□ -1.3
HMGB1P38-201ENST00000490557 CLASP2O75122 1294 aaKnown RBP6.92□□□□□ -1.3
HMGB1P38-201ENST00000490557 ATF2P15336 505 aa6.92□□□□□ -1.3
HMGB1P38-201ENST00000490557 SOX5P35711 763 aa6.92□□□□□ -1.3
HMGB1P38-201ENST00000490557 LIMS1P48059 325 aa6.92□□□□□ -1.3
HMGB1P38-201ENST00000490557 SCNN1BP51168 640 aa6.92□□□□□ -1.3
HMGB1P38-201ENST00000490557 IRF9Q00978 393 aa6.92□□□□□ -1.3
HMGB1P38-201ENST00000490557 ZNF385BQ569K4 471 aa6.92□□□□□ -1.3
HMGB1P38-201ENST00000490557 PKN3Q6P5Z2 889 aa6.92□□□□□ -1.3
HMGB1P38-201ENST00000490557 CNKSR3Q6P9H4 555 aa6.92□□□□□ -1.3
HMGB1P38-201ENST00000490557 TEPPQ6URK8 271 aa6.92□□□□□ -1.3
HMGB1P38-201ENST00000490557 FAM26EQ8N5C1 309 aa6.92□□□□□ -1.3
HMGB1P38-201ENST00000490557 CHAC2Q8WUX2 184 aa6.92□□□□□ -1.3
HMGB1P38-201ENST00000490557 PCIF1Q9H4Z3 704 aa6.92□□□□□ -1.3
HMGB1P38-201ENST00000490557 MAPRE3Q9UPY8 281 aa6.92□□□□□ -1.3
HMGB1P38-201ENST00000490557 KCTD3Q9Y597 815 aa6.92□□□□□ -1.3
HMGB1P38-201ENST00000490557 NPIPB6E9PJ23 425 aa6.91□□□□□ -1.3
HMGB1P38-201ENST00000490557 H7C1D1 291 aa6.91□□□□□ -1.3
HMGB1P38-201ENST00000490557 CBX4O00257 560 aa6.91□□□□□ -1.3
HMGB1P38-201ENST00000490557 C8BP07358 591 aa6.91□□□□□ -1.3
HMGB1P38-201ENST00000490557 FAHP16930 419 aa6.91□□□□□ -1.3
HMGB1P38-201ENST00000490557 PI3P19957 117 aa6.91□□□□□ -1.3
HMGB1P38-201ENST00000490557 POU3F2P20265 443 aaPredicted RBP6.91□□□□□ -1.3
HMGB1P38-201ENST00000490557 ZNF174Q15697 407 aa6.91□□□□□ -1.3
HMGB1P38-201ENST00000490557 ZNF124Q15973 351 aa6.91□□□□□ -1.3
HMGB1P38-201ENST00000490557 KCNA10Q16322 511 aa6.91□□□□□ -1.3
HMGB1P38-201ENST00000490557 CPZQ66K79 652 aa6.91□□□□□ -1.3
HMGB1P38-201ENST00000490557 VASNQ6EMK4 673 aa6.91□□□□□ -1.3
HMGB1P38-201ENST00000490557 OR2W6PQ8NHA6 318 aa6.91□□□□□ -1.3
HMGB1P38-201ENST00000490557 TELO2Q9Y4R8 837 aa6.91□□□□□ -1.3
HMGB1P38-201ENST00000490557 PMF1-BGLAPU3KQ54 211 aa6.91□□□□□ -1.3
HMGB1P38-201ENST00000490557 LRG1P02750 347 aa6.9□□□□□ -1.3
HMGB1P38-201ENST00000490557 C8AP07357 584 aa6.9□□□□□ -1.3
HMGB1P38-201ENST00000490557 IGFBP6P24592 240 aaPredicted RBP6.9□□□□□ -1.3
HMGB1P38-201ENST00000490557 MASP1P48740 699 aa6.9□□□□□ -1.3
HMGB1P38-201ENST00000490557 LINC00310P59036 64 aa6.9□□□□□ -1.3
HMGB1P38-201ENST00000490557 TMEM132BQ14DG7 1078 aa6.9□□□□□ -1.3
HMGB1P38-201ENST00000490557 PCBP1Q15365 356 aaKnown RBP eCLIP6.9□□□□□ -1.3
HMGB1P38-201ENST00000490557 CR1LQ2VPA4 569 aa6.9□□□□□ -1.3
HMGB1P38-201ENST00000490557 DDX46Q7L014 1031 aaKnown RBP6.9□□□□□ -1.3
HMGB1P38-201ENST00000490557 KIF18BQ86Y91 864 aa6.9□□□□□ -1.3
HMGB1P38-201ENST00000490557 PWWP2AQ96N64 755 aa6.9□□□□□ -1.3
HMGB1P38-201ENST00000490557 CAAP1Q9H8G2 361 aa6.9□□□□□ -1.3
HMGB1P38-201ENST00000490557 SPC25Q9HBM1 224 aa6.9□□□□□ -1.3
HMGB1P38-201ENST00000490557 CD320Q9NPF0 282 aa6.9□□□□□ -1.3
HMGB1P38-201ENST00000490557 KCNH7Q9NS40 1196 aa6.9□□□□□ -1.3
HMGB1P38-201ENST00000490557 ARHGAP28Q9P2N2 729 aa6.9□□□□□ -1.3
HMGB1P38-201ENST00000490557 B4GALT6Q9UBX8 382 aa6.9□□□□□ -1.3
HMGB1P38-201ENST00000490557 SBNO2Q9Y2G9 1366 aa6.9□□□□□ -1.31
HMGB1P38-201ENST00000490557 A0A087X0B3 334 aa6.89□□□□□ -1.31
HMGB1P38-201ENST00000490557 GSG1L2A8MUP6 293 aa6.89□□□□□ -1.31
HMGB1P38-201ENST00000490557 TRAF5O00463 557 aa6.89□□□□□ -1.31
HMGB1P38-201ENST00000490557 NUAK1O60285 661 aa6.89□□□□□ -1.31
HMGB1P38-201ENST00000490557 DNAJC6O75061 913 aa6.89□□□□□ -1.31
HMGB1P38-201ENST00000490557 ENO2P09104 434 aaPredicted RBP6.89□□□□□ -1.31
HMGB1P38-201ENST00000490557 MECP2P51608 486 aaKnown RBP6.89□□□□□ -1.31
HMGB1P38-201ENST00000490557 IL2P60568 153 aa6.89□□□□□ -1.31
HMGB1P38-201ENST00000490557 SSPNQ14714 243 aa6.89□□□□□ -1.31
HMGB1P38-201ENST00000490557 CIAPIN1Q6FI81 312 aa6.89□□□□□ -1.31
HMGB1P38-201ENST00000490557 TMC5Q6UXY8 1006 aa6.89□□□□□ -1.31
HMGB1P38-201ENST00000490557 FILIP1Q7Z7B0 1213 aa6.89□□□□□ -1.31
HMGB1P38-201ENST00000490557 NOSTRINQ8IVI9 506 aa6.89□□□□□ -1.31
HMGB1P38-201ENST00000490557 ZBTB8AQ96BR9 441 aa6.89□□□□□ -1.31
HMGB1P38-201ENST00000490557 CLIC6Q96NY7 704 aa6.89□□□□□ -1.31
HMGB1P38-201ENST00000490557 TMEM209Q96SK2 561 aa6.89□□□□□ -1.31
HMGB1P38-201ENST00000490557 FAM90A27PA6NNH2 459 aa6.88□□□□□ -1.31
HMGB1P38-201ENST00000490557 STAT3P40763 770 aa6.88□□□□□ -1.31
HMGB1P38-201ENST00000490557 KIF11P52732 1056 aa6.88□□□□□ -1.31
HMGB1P38-201ENST00000490557 OCRLQ01968 901 aa6.88□□□□□ -1.31
HMGB1P38-201ENST00000490557 OTOP1Q7RTM1 612 aa6.88□□□□□ -1.31
HMGB1P38-201ENST00000490557 C11orf74Q86VG3 221 aa6.88□□□□□ -1.31
HMGB1P38-201ENST00000490557 FAM129CQ86XR2 697 aa6.88□□□□□ -1.31
HMGB1P38-201ENST00000490557 THNSL2Q86YJ6 484 aa6.88□□□□□ -1.31
HMGB1P38-201ENST00000490557 TMEM151BQ8IW70 566 aa6.88□□□□□ -1.31
HMGB1P38-201ENST00000490557 FAM177A1Q8N128 213 aaPredicted RBP6.88□□□□□ -1.31
HMGB1P38-201ENST00000490557 UBR7Q8N806 425 aa6.88□□□□□ -1.31
HMGB1P38-201ENST00000490557 TTLL6Q8N841 843 aa6.88□□□□□ -1.31
HMGB1P38-201ENST00000490557 USP7Q93009 1102 aa6.88□□□□□ -1.31
HMGB1P38-201ENST00000490557 TOX2Q96NM4 488 aa6.88□□□□□ -1.31
HMGB1P38-201ENST00000490557 GORASP1Q9BQQ3 440 aa6.88□□□□□ -1.31
HMGB1P38-201ENST00000490557 PDGFDQ9GZP0 370 aaPredicted RBP6.88□□□□□ -1.31
HMGB1P38-201ENST00000490557 MTFR1LQ9H019 292 aa6.88□□□□□ -1.31
HMGB1P38-201ENST00000490557 ACOT7O00154 380 aa6.87□□□□□ -1.31
HMGB1P38-201ENST00000490557 F2P00734 622 aa6.87□□□□□ -1.31
HMGB1P38-201ENST00000490557 KRT1P04264 644 aa6.87□□□□□ -1.31
HMGB1P38-201ENST00000490557 CPEP16870 476 aa6.87□□□□□ -1.31
HMGB1P38-201ENST00000490557 SMAD4Q13485 552 aaKnown RBP6.87□□□□□ -1.31
HMGB1P38-201ENST00000490557 CD276Q5ZPR3 534 aa6.87□□□□□ -1.31
HMGB1P38-201ENST00000490557 STK32CQ86UX6 486 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms