RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 OSBPL5Q9H0X9 879 aaPredicted RBP6.42□□□□□ -1.38
VPS41-211ENST00000466017 PI4KBQ9UBF8 816 aa6.42□□□□□ -1.38
VPS41-211ENST00000466017 TACC3Q9Y6A5 838 aa6.42□□□□□ -1.38
VPS41-211ENST00000466017 FLT1P17948 1338 aa6.42□□□□□ -1.38
VPS41-211ENST00000466017 LAMA4Q16363 1823 aa6.41□□□□□ -1.38
VPS41-211ENST00000466017 HMX2A2RU54 273 aa6.41□□□□□ -1.38
VPS41-211ENST00000466017 H7C1D1 291 aa6.41□□□□□ -1.38
VPS41-211ENST00000466017 RBAK-RBAKDNI3L0D1 243 aa6.41□□□□□ -1.38
VPS41-211ENST00000466017 WNT10BO00744 389 aa6.41□□□□□ -1.38
VPS41-211ENST00000466017 SH2B2O14492 632 aaPredicted RBP6.41□□□□□ -1.38
VPS41-211ENST00000466017 PRC1O43663 620 aa6.41□□□□□ -1.38
VPS41-211ENST00000466017 MYO1BO43795 1136 aa6.41□□□□□ -1.38
VPS41-211ENST00000466017 B3GALT4O96024 378 aa6.41□□□□□ -1.38
VPS41-211ENST00000466017 HLA-DOAP06340 250 aa6.41□□□□□ -1.38
VPS41-211ENST00000466017 YBX3P16989 372 aaKnown RBP eCLIP6.41□□□□□ -1.38
VPS41-211ENST00000466017 PLCD1P51178 756 aa6.41□□□□□ -1.38
VPS41-211ENST00000466017 ANTXR2P58335 489 aa6.41□□□□□ -1.38
VPS41-211ENST00000466017 HAND2P61296 217 aa6.41□□□□□ -1.38
VPS41-211ENST00000466017 SART3Q15020 963 aaKnown RBP6.41□□□□□ -1.38
VPS41-211ENST00000466017 SEC23AQ15436 765 aa6.41□□□□□ -1.38
VPS41-211ENST00000466017 SGO2Q562F6 1265 aa6.41□□□□□ -1.38
VPS41-211ENST00000466017 IQCA1Q86XH1 822 aa6.41□□□□□ -1.38
VPS41-211ENST00000466017 ZNF444Q8N0Y2 327 aaPredicted RBP6.41□□□□□ -1.38
VPS41-211ENST00000466017 C3orf58Q8NDZ4 430 aa6.41□□□□□ -1.38
VPS41-211ENST00000466017 SOX17Q9H6I2 414 aaPredicted RBP6.41□□□□□ -1.38
VPS41-211ENST00000466017 TDRD3Q9H7E2 651 aaKnown RBP6.41□□□□□ -1.38
VPS41-211ENST00000466017 MYOZ2Q9NPC6 264 aa6.41□□□□□ -1.38
VPS41-211ENST00000466017 DDX4Q9NQI0 724 aaKnown RBP6.41□□□□□ -1.38
VPS41-211ENST00000466017 GINM1Q9NU53 330 aa6.41□□□□□ -1.38
VPS41-211ENST00000466017 TMOD2Q9NZR1 351 aa6.41□□□□□ -1.38
VPS41-211ENST00000466017 ZNF70Q9UC06 446 aaPredicted RBP6.41□□□□□ -1.38
VPS41-211ENST00000466017 PGAP2Q9UHJ9 254 aa6.41□□□□□ -1.38
VPS41-211ENST00000466017 CNOT7Q9UIV1 285 aaKnown RBP6.41□□□□□ -1.38
VPS41-211ENST00000466017 ANGEL1Q9UNK9 670 aaKnown RBP6.41□□□□□ -1.38
VPS41-211ENST00000466017 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.41□□□□□ -1.38
VPS41-211ENST00000466017 TIAM2Q8IVF5 1701 aa6.41□□□□□ -1.38
VPS41-211ENST00000466017 FOCADQ5VW36 1801 aa6.41□□□□□ -1.38
VPS41-211ENST00000466017 MEGF11A6BM72 1044 aa6.4□□□□□ -1.38
VPS41-211ENST00000466017 B4E1Z4 1266 aa6.4□□□□□ -1.38
VPS41-211ENST00000466017 PFKFB2O60825 505 aa6.4□□□□□ -1.38
VPS41-211ENST00000466017 TIAF1O95411 115 aa6.4□□□□□ -1.38
VPS41-211ENST00000466017 CPA1P15085 419 aa6.4□□□□□ -1.38
VPS41-211ENST00000466017 PDIA3P30101 505 aaKnown RBP6.4□□□□□ -1.38
VPS41-211ENST00000466017 TNNI2P48788 182 aa6.4□□□□□ -1.38
VPS41-211ENST00000466017 CDK8P49336 464 aa6.4□□□□□ -1.38
VPS41-211ENST00000466017 ARL4DP49703 201 aa6.4□□□□□ -1.38
VPS41-211ENST00000466017 GMPSP49915 693 aaPredicted RBP6.4□□□□□ -1.38
VPS41-211ENST00000466017 RBM5P52756 815 aaKnown RBP eCLIP6.4□□□□□ -1.38
VPS41-211ENST00000466017 TNFAIP1Q13829 316 aa6.4□□□□□ -1.38
VPS41-211ENST00000466017 ME3Q16798 604 aa6.4□□□□□ -1.38
VPS41-211ENST00000466017 RASIP1Q5U651 963 aa6.4□□□□□ -1.38
VPS41-211ENST00000466017 TATDN1Q6P1N9 297 aa6.4□□□□□ -1.38
VPS41-211ENST00000466017 CYB5R4Q7L1T6 521 aa6.4□□□□□ -1.38
VPS41-211ENST00000466017 MAPKAPK5Q8IW41 473 aa6.4□□□□□ -1.38
VPS41-211ENST00000466017 TRIM42Q8IWZ5 723 aa6.4□□□□□ -1.38
VPS41-211ENST00000466017 MKNK2Q9HBH9 465 aa6.4□□□□□ -1.38
VPS41-211ENST00000466017 GPRC5DQ9NZD1 345 aa6.4□□□□□ -1.38
VPS41-211ENST00000466017 HERC5Q9UII4 1024 aaKnown RBP6.4□□□□□ -1.38
VPS41-211ENST00000466017 SERPINB13Q9UIV8 391 aa6.4□□□□□ -1.38
VPS41-211ENST00000466017 TPCN1Q9ULQ1 816 aa6.4□□□□□ -1.38
VPS41-211ENST00000466017 SYNPO2Q9UMS6 1093 aa6.4□□□□□ -1.38
VPS41-211ENST00000466017 NID2Q14112 1375 aa6.4□□□□□ -1.39
VPS41-211ENST00000466017 CDK5RAP2Q96SN8 1893 aa6.39□□□□□ -1.39
VPS41-211ENST00000466017 MYH1P12882 1939 aa6.39□□□□□ -1.39
VPS41-211ENST00000466017 BAZ2AQ9UIF9 1905 aaKnown RBP6.39□□□□□ -1.39
VPS41-211ENST00000466017 IGKV6D-41A0A0C4DH26 115 aa6.39□□□□□ -1.39
VPS41-211ENST00000466017 ERICH2A1L162 156 aa6.39□□□□□ -1.39
VPS41-211ENST00000466017 IFIT3O14879 490 aaKnown RBP6.39□□□□□ -1.39
VPS41-211ENST00000466017 DHX16O60231 1041 aaKnown RBP6.39□□□□□ -1.39
VPS41-211ENST00000466017 FBXO24O75426 580 aa6.39□□□□□ -1.39
VPS41-211ENST00000466017 MED26O95402 600 aa6.39□□□□□ -1.39
VPS41-211ENST00000466017 CALM1P0DP23 149 aa6.39□□□□□ -1.39
VPS41-211ENST00000466017 CALM2P0DP24 149 aa6.39□□□□□ -1.39
VPS41-211ENST00000466017 CALM3P0DP25 149 aa6.39□□□□□ -1.39
VPS41-211ENST00000466017 CYP2D6P10635 497 aa6.39□□□□□ -1.39
VPS41-211ENST00000466017 SMARCA1P28370 1054 aa6.39□□□□□ -1.39
VPS41-211ENST00000466017 NUCB2P80303 420 aa6.39□□□□□ -1.39
VPS41-211ENST00000466017 TFAP4Q01664 338 aa6.39□□□□□ -1.39
VPS41-211ENST00000466017 NFIAQ12857 509 aa6.39□□□□□ -1.39
VPS41-211ENST00000466017 WTAPQ15007 396 aa6.39□□□□□ -1.39
VPS41-211ENST00000466017 POU4F3Q15319 338 aa6.39□□□□□ -1.39
VPS41-211ENST00000466017 EXOSC6Q5RKV6 272 aaKnown RBP6.39□□□□□ -1.39
VPS41-211ENST00000466017 C9orf131Q5VYM1 1079 aa6.39□□□□□ -1.39
VPS41-211ENST00000466017 CDPF1Q6NVV7 123 aa6.39□□□□□ -1.39
VPS41-211ENST00000466017 DNAJC14Q6Y2X3 702 aaPredicted RBP6.39□□□□□ -1.39
VPS41-211ENST00000466017 SYNE3Q6ZMZ3 975 aa6.39□□□□□ -1.39
VPS41-211ENST00000466017 Q8N3U1 123 aa6.39□□□□□ -1.39
VPS41-211ENST00000466017 C12orf50Q8NA57 414 aaPredicted RBP6.39□□□□□ -1.39
VPS41-211ENST00000466017 SMARCC2Q8TAQ2 1214 aa6.39□□□□□ -1.39
VPS41-211ENST00000466017 BRF1Q92994 677 aa6.39□□□□□ -1.39
VPS41-211ENST00000466017 GTF3C6Q969F1 213 aa6.39□□□□□ -1.39
VPS41-211ENST00000466017 MKL1Q969V6 931 aa6.39□□□□□ -1.39
VPS41-211ENST00000466017 RNF208Q9H0X6 261 aa6.39□□□□□ -1.39
VPS41-211ENST00000466017 SLKQ9H2G2 1235 aaPredicted RBP6.39□□□□□ -1.39
VPS41-211ENST00000466017 LY9Q9HBG7 655 aa6.39□□□□□ -1.39
VPS41-211ENST00000466017 INCENPQ9NQS7 918 aa6.39□□□□□ -1.39
VPS41-211ENST00000466017 ADARB2Q9NS39 739 aaKnown RBP6.39□□□□□ -1.39
VPS41-211ENST00000466017 CHMP5Q9NZZ3 219 aa6.39□□□□□ -1.39
VPS41-211ENST00000466017 PPP2R3BQ9Y5P8 575 aa6.39□□□□□ -1.39
VPS41-211ENST00000466017 NEDD4P46934 1319 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms