RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 KLRC3Q07444 240 aa20.26■□□□□ 0.83
USP48-204ENST00000400301 MMS19Q96T76 1030 aa20.26■□□□□ 0.83
USP48-204ENST00000400301 TDRD3Q9H7E2 651 aaKnown RBP20.26■□□□□ 0.83
USP48-204ENST00000400301 PARVGQ9HBI0 331 aa20.26■□□□□ 0.83
USP48-204ENST00000400301 NCK2O43639 380 aa20.26■□□□□ 0.83
USP48-204ENST00000400301 ZBED4O75132 1171 aa20.26■□□□□ 0.83
USP48-204ENST00000400301 LRRN2O75325 713 aa20.26■□□□□ 0.83
USP48-204ENST00000400301 KIF4AO95239 1232 aa20.26■□□□□ 0.83
USP48-204ENST00000400301 MTMR3Q13615 1198 aa20.26■□□□□ 0.83
USP48-204ENST00000400301 CCDC105Q8IYK2 499 aa20.26■□□□□ 0.83
USP48-204ENST00000400301 DAGLBQ8NCG7 672 aa20.26■□□□□ 0.83
USP48-204ENST00000400301 RAB17Q9H0T7 212 aa20.26■□□□□ 0.83
USP48-204ENST00000400301 PALMO75781 387 aa20.26■□□□□ 0.83
USP48-204ENST00000400301 TBX2Q13207 712 aaPredicted RBP20.26■□□□□ 0.83
USP48-204ENST00000400301 TTLL12Q14166 644 aaPredicted RBP20.26■□□□□ 0.83
USP48-204ENST00000400301 FAM102BQ5T8I3 360 aa20.26■□□□□ 0.83
USP48-204ENST00000400301 PPM1KQ8N3J5 372 aa20.26■□□□□ 0.83
USP48-204ENST00000400301 NACC1Q96RE7 527 aa20.26■□□□□ 0.83
USP48-204ENST00000400301 XKR9Q5GH70 373 aa20.26■□□□□ 0.83
USP48-204ENST00000400301 PODNQ7Z5L7 613 aa20.26■□□□□ 0.83
USP48-204ENST00000400301 SP8Q8IXZ3 490 aa20.26■□□□□ 0.83
USP48-204ENST00000400301 WDR11Q9BZH6 1224 aa20.26■□□□□ 0.83
USP48-204ENST00000400301 SYNCQ9H7C4 482 aa20.26■□□□□ 0.83
USP48-204ENST00000400301 IL17RBQ9NRM6 502 aa20.26■□□□□ 0.83
USP48-204ENST00000400301 STIM2Q9P246 746 aa20.26■□□□□ 0.83
USP48-204ENST00000400301 A0A1W2PRG0 241 aa20.25■□□□□ 0.83
USP48-204ENST00000400301 VEGFAP15692 232 aaPredicted RBP20.25■□□□□ 0.83
USP48-204ENST00000400301 INPP5BP32019 993 aa20.25■□□□□ 0.83
USP48-204ENST00000400301 TBC1D10BQ4KMP7 808 aaPredicted RBP20.25■□□□□ 0.83
USP48-204ENST00000400301 NIM1KQ8IY84 436 aa20.25■□□□□ 0.83
USP48-204ENST00000400301 MASTLQ96GX5 879 aa20.25■□□□□ 0.83
USP48-204ENST00000400301 IWS1Q96ST2 819 aa20.25■□□□□ 0.83
USP48-204ENST00000400301 MYL7Q01449 175 aa20.25■□□□□ 0.83
USP48-204ENST00000400301 NOA1Q8NC60 698 aaKnown RBP20.25■□□□□ 0.83
USP48-204ENST00000400301 OSBPL9Q96SU4 736 aa20.25■□□□□ 0.83
USP48-204ENST00000400301 PAIP2Q9BPZ3 127 aaKnown RBP20.25■□□□□ 0.83
USP48-204ENST00000400301 INTS13Q9NVM9 706 aa20.25■□□□□ 0.83
USP48-204ENST00000400301 NLRX1Q86UT6 975 aa20.25■□□□□ 0.83
USP48-204ENST00000400301 NSRP1Q9H0G5 558 aaKnown RBP20.25■□□□□ 0.83
USP48-204ENST00000400301 KBTBD4Q9NVX7 518 aa20.25■□□□□ 0.83
USP48-204ENST00000400301 SBDSQ9Y3A5 250 aaKnown RBP eCLIP20.25■□□□□ 0.83
USP48-204ENST00000400301 GJA3Q9Y6H8 435 aa20.25■□□□□ 0.83
USP48-204ENST00000400301 ATRNO75882 1429 aa20.24■□□□□ 0.83
USP48-204ENST00000400301 ZNF185O15231 689 aa20.24■□□□□ 0.83
USP48-204ENST00000400301 LMNB1P20700 586 aa20.24■□□□□ 0.83
USP48-204ENST00000400301 MXD3Q9BW11 206 aa20.24■□□□□ 0.83
USP48-204ENST00000400301 PPANQ9NQ55 473 aaKnown RBP20.24■□□□□ 0.83
USP48-204ENST00000400301 ASIC3Q9UHC3 531 aa20.24■□□□□ 0.83
USP48-204ENST00000400301 PGRMC1O00264 195 aaKnown RBP20.24■□□□□ 0.83
USP48-204ENST00000400301 RCSD1Q6JBY9 416 aa20.24■□□□□ 0.83
USP48-204ENST00000400301 ANKS4BQ8N8V4 417 aa20.24■□□□□ 0.83
USP48-204ENST00000400301 RAD17O75943 681 aa20.23■□□□□ 0.83
USP48-204ENST00000400301 PCIF1Q9H4Z3 704 aa20.23■□□□□ 0.83
USP48-204ENST00000400301 KCNK9Q9NPC2 374 aa20.23■□□□□ 0.83
USP48-204ENST00000400301 E7EVH7 732 aa20.23■□□□□ 0.83
USP48-204ENST00000400301 PDXDC1Q6P996 788 aa20.23■□□□□ 0.83
USP48-204ENST00000400301 CCT5P48643 541 aa20.23■□□□□ 0.83
USP48-204ENST00000400301 NAALADL2Q58DX5 795 aa20.23■□□□□ 0.83
USP48-204ENST00000400301 GJD4Q96KN9 370 aaPredicted RBP20.23■□□□□ 0.83
USP48-204ENST00000400301 PICK1Q9NRD5 415 aa20.23■□□□□ 0.83
USP48-204ENST00000400301 KIF13AQ9H1H9 1805 aa20.23■□□□□ 0.83
USP48-204ENST00000400301 DKC1O60832 514 aaKnown RBP eCLIP20.23■□□□□ 0.83
USP48-204ENST00000400301 TTI2Q6NXR4 508 aa20.23■□□□□ 0.83
USP48-204ENST00000400301 JMJD4Q9H9V9 463 aa20.23■□□□□ 0.83
USP48-204ENST00000400301 NFU1Q9UMS0 254 aa20.23■□□□□ 0.83
USP48-204ENST00000400301 NPHP3-ACAD11A0A0J9YXS1 232 aa20.22■□□□□ 0.83
USP48-204ENST00000400301 N4BP1O75113 896 aaKnown RBP20.22■□□□□ 0.83
USP48-204ENST00000400301 NR3C1P04150 777 aa20.22■□□□□ 0.83
USP48-204ENST00000400301 USP11P51784 963 aa20.22■□□□□ 0.83
USP48-204ENST00000400301 KNOP1Q1ED39 458 aaKnown RBP20.22■□□□□ 0.83
USP48-204ENST00000400301 SH3RF1Q7Z6J0 888 aa20.22■□□□□ 0.83
USP48-204ENST00000400301 FAM20AQ96MK3 541 aa20.22■□□□□ 0.83
USP48-204ENST00000400301 CRAMP1Q96RY5 1269 aa20.22■□□□□ 0.83
USP48-204ENST00000400301 MED1Q15648 1581 aaPredicted RBP20.22■□□□□ 0.83
USP48-204ENST00000400301 ESYT2A0FGR8 921 aa20.22■□□□□ 0.83
USP48-204ENST00000400301 SUGT1Q9Y2Z0 365 aa20.22■□□□□ 0.83
USP48-204ENST00000400301 EVX2Q03828 476 aa20.22■□□□□ 0.83
USP48-204ENST00000400301 C10orf76Q5T2E6 689 aa20.22■□□□□ 0.83
USP48-204ENST00000400301 EMBQ6PCB8 327 aa20.22■□□□□ 0.83
USP48-204ENST00000400301 MIGA2Q7L4E1 593 aa20.22■□□□□ 0.83
USP48-204ENST00000400301 KCND1Q9NSA2 647 aa20.22■□□□□ 0.83
USP48-204ENST00000400301 LMO7Q8WWI1 1683 aa20.22■□□□□ 0.83
USP48-204ENST00000400301 AFF2P51816 1311 aa20.21■□□□□ 0.83
USP48-204ENST00000400301 VIMP08670 466 aaKnown RBP20.21■□□□□ 0.83
USP48-204ENST00000400301 APBA1Q02410 837 aa20.21■□□□□ 0.83
USP48-204ENST00000400301 STRN3Q13033 797 aa20.21■□□□□ 0.83
USP48-204ENST00000400301 RNF10Q8N5U6 811 aaKnown RBP20.21■□□□□ 0.83
USP48-204ENST00000400301 EDEM3Q9BZQ6 932 aa20.21■□□□□ 0.83
USP48-204ENST00000400301 SNX12Q9UMY4 172 aa20.21■□□□□ 0.83
USP48-204ENST00000400301 SMARCA1P28370 1054 aa20.21■□□□□ 0.83
USP48-204ENST00000400301 PPM1EQ8WY54 764 aa20.21■□□□□ 0.83
USP48-204ENST00000400301 RTFDC1Q9BY42 306 aaPredicted RBP20.21■□□□□ 0.83
USP48-204ENST00000400301 FHOD1Q9Y613 1164 aa20.21■□□□□ 0.83
USP48-204ENST00000400301 LRRC37A3O60309 1634 aa20.21■□□□□ 0.83
USP48-204ENST00000400301 SLC37A4O43826 429 aa20.21■□□□□ 0.83
USP48-204ENST00000400301 SPATA4Q8NEY3 305 aa20.21■□□□□ 0.83
USP48-204ENST00000400301 AP1M1Q9BXS5 423 aa20.21■□□□□ 0.83
USP48-204ENST00000400301 SUGCTQ9HAC7 445 aa20.21■□□□□ 0.83
USP48-204ENST00000400301 PLA2G4AP47712 749 aa20.21■□□□□ 0.83
USP48-204ENST00000400301 PMS1P54277 932 aaKnown RBP20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms