RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 PURAQ00577 322 aaKnown RBP5.13□□□□□ -1.59
HMGB1-204ENST00000399489 SIM2Q14190 667 aaPredicted RBP5.13□□□□□ -1.59
HMGB1-204ENST00000399489 EEF1DP3Q658K8 133 aa5.13□□□□□ -1.59
HMGB1-204ENST00000399489 FRMD5Q7Z6J6 570 aa5.13□□□□□ -1.59
HMGB1-204ENST00000399489 ADAT2Q7Z6V5 191 aaKnown RBP5.13□□□□□ -1.59
HMGB1-204ENST00000399489 ALG3Q92685 438 aa5.13□□□□□ -1.59
HMGB1-204ENST00000399489 FCRL3Q96P31 734 aaPredicted RBP5.13□□□□□ -1.59
HMGB1-204ENST00000399489 PHAXQ9H814 394 aaKnown RBP5.13□□□□□ -1.59
HMGB1-204ENST00000399489 AS3MTQ9HBK9 375 aa5.13□□□□□ -1.59
HMGB1-204ENST00000399489 USP40Q9NVE5 1235 aa5.13□□□□□ -1.59
HMGB1-204ENST00000399489 GOLGA6AQ9NYA3 693 aa5.13□□□□□ -1.59
HMGB1-204ENST00000399489 SUSD2Q9UGT4 822 aa5.13□□□□□ -1.59
HMGB1-204ENST00000399489 NOB1Q9ULX3 412 aaKnown RBP5.13□□□□□ -1.59
HMGB1-204ENST00000399489 TRBV23OR9-2A0A075B6M9 112 aa5.12□□□□□ -1.59
HMGB1-204ENST00000399489 EPB41L2O43491 1005 aaKnown RBP5.12□□□□□ -1.59
HMGB1-204ENST00000399489 RFPL3O75679 317 aa5.12□□□□□ -1.59
HMGB1-204ENST00000399489 LDHCP07864 332 aa5.12□□□□□ -1.59
HMGB1-204ENST00000399489 IFIT2P09913 472 aaKnown RBP5.12□□□□□ -1.59
HMGB1-204ENST00000399489 TACR1P25103 407 aa5.12□□□□□ -1.59
HMGB1-204ENST00000399489 LIMS1P48059 325 aa5.12□□□□□ -1.59
HMGB1-204ENST00000399489 CEBPAP49715 358 aaPredicted RBP5.12□□□□□ -1.59
HMGB1-204ENST00000399489 CASP7P55210 303 aa5.12□□□□□ -1.59
HMGB1-204ENST00000399489 POU5F1Q01860 360 aaKnown RBP5.12□□□□□ -1.59
HMGB1-204ENST00000399489 GFOD2Q3B7J2 385 aa5.12□□□□□ -1.59
HMGB1-204ENST00000399489 MRM1Q6IN84 353 aaKnown RBP5.12□□□□□ -1.59
HMGB1-204ENST00000399489 RCSD1Q6JBY9 416 aa5.12□□□□□ -1.59
HMGB1-204ENST00000399489 PRRT2Q7Z6L0 340 aaPredicted RBP5.12□□□□□ -1.59
HMGB1-204ENST00000399489 TEX19Q8NA77 164 aa5.12□□□□□ -1.59
HMGB1-204ENST00000399489 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.12□□□□□ -1.59
HMGB1-204ENST00000399489 CHMP4CQ96CF2 233 aa5.12□□□□□ -1.59
HMGB1-204ENST00000399489 HOOK2Q96ED9 719 aa5.12□□□□□ -1.59
HMGB1-204ENST00000399489 MTMR8Q96EF0 704 aa5.12□□□□□ -1.59
HMGB1-204ENST00000399489 CAMKK2Q96RR4 588 aa5.12□□□□□ -1.59
HMGB1-204ENST00000399489 ZNF69Q9UC07 566 aa5.12□□□□□ -1.59
HMGB1-204ENST00000399489 TIMM44O43615 452 aa5.11□□□□□ -1.59
HMGB1-204ENST00000399489 TCEA3O75764 348 aa5.11□□□□□ -1.59
HMGB1-204ENST00000399489 MYL3P08590 195 aa5.11□□□□□ -1.59
HMGB1-204ENST00000399489 FAM153BP0C7A2 387 aa5.11□□□□□ -1.59
HMGB1-204ENST00000399489 TRIM27P14373 513 aa5.11□□□□□ -1.59
HMGB1-204ENST00000399489 IFNGR1P15260 489 aa5.11□□□□□ -1.59
HMGB1-204ENST00000399489 SEPHS1P49903 392 aa5.11□□□□□ -1.59
HMGB1-204ENST00000399489 PRR5P85299 388 aa5.11□□□□□ -1.59
HMGB1-204ENST00000399489 FOXO4P98177 505 aa5.11□□□□□ -1.59
HMGB1-204ENST00000399489 SLC7A5Q01650 507 aa5.11□□□□□ -1.59
HMGB1-204ENST00000399489 ZYXQ15942 572 aaKnown RBP5.11□□□□□ -1.59
HMGB1-204ENST00000399489 RUFY4Q6ZNE9 571 aa5.11□□□□□ -1.59
HMGB1-204ENST00000399489 PDILTQ8N807 584 aa5.11□□□□□ -1.59
HMGB1-204ENST00000399489 C1orf131Q8NDD1 294 aaKnown RBP5.11□□□□□ -1.59
HMGB1-204ENST00000399489 HAUS7Q99871 368 aa5.11□□□□□ -1.59
HMGB1-204ENST00000399489 TARS2Q9BW92 718 aaKnown RBP5.11□□□□□ -1.59
HMGB1-204ENST00000399489 AASDHPPTQ9NRN7 309 aa5.11□□□□□ -1.59
HMGB1-204ENST00000399489 DAAM1Q9Y4D1 1078 aa5.11□□□□□ -1.59
HMGB1-204ENST00000399489 PPP2R3BQ9Y5P8 575 aa5.11□□□□□ -1.59
HMGB1-204ENST00000399489 ADCY3O60266 1144 aa5.11□□□□□ -1.59
HMGB1-204ENST00000399489 DDAH1O94760 285 aa5.11□□□□□ -1.59
HMGB1-204ENST00000399489 RAPGEF3O95398 923 aa5.11□□□□□ -1.59
HMGB1-204ENST00000399489 NAT2P11245 290 aa5.11□□□□□ -1.59
HMGB1-204ENST00000399489 IGFBP6P24592 240 aaPredicted RBP5.11□□□□□ -1.59
HMGB1-204ENST00000399489 HTR3AP46098 478 aa5.11□□□□□ -1.59
HMGB1-204ENST00000399489 KRTAP10-2P60368 255 aa5.11□□□□□ -1.59
HMGB1-204ENST00000399489 AMPD2Q01433 879 aa5.11□□□□□ -1.59
HMGB1-204ENST00000399489 KCTD2Q14681 263 aa5.11□□□□□ -1.59
HMGB1-204ENST00000399489 SLC9A5Q14940 896 aa5.11□□□□□ -1.59
HMGB1-204ENST00000399489 LONRF2Q1L5Z9 754 aa5.11□□□□□ -1.59
HMGB1-204ENST00000399489 IL31Q6EBC2 164 aa5.11□□□□□ -1.59
HMGB1-204ENST00000399489 CCDC174Q6PII3 467 aa5.11□□□□□ -1.59
HMGB1-204ENST00000399489 C6orf15Q6UXA7 325 aaPredicted RBP5.11□□□□□ -1.59
HMGB1-204ENST00000399489 STRA8Q7Z7C7 330 aa5.11□□□□□ -1.59
HMGB1-204ENST00000399489 LZTR1Q8N653 840 aa5.11□□□□□ -1.59
HMGB1-204ENST00000399489 C19orf47Q8N9M1 422 aaKnown RBP5.11□□□□□ -1.59
HMGB1-204ENST00000399489 SYT8Q8NBV8 401 aa5.11□□□□□ -1.59
HMGB1-204ENST00000399489 ADCY4Q8NFM4 1077 aa5.11□□□□□ -1.59
HMGB1-204ENST00000399489 USP33Q8TEY7 942 aa5.11□□□□□ -1.59
HMGB1-204ENST00000399489 PEX11GQ96HA9 241 aa5.11□□□□□ -1.59
HMGB1-204ENST00000399489 VSTM5A8MXK1 200 aa5.1□□□□□ -1.59
HMGB1-204ENST00000399489 AURKAO14965 403 aa5.1□□□□□ -1.59
HMGB1-204ENST00000399489 ABLIM3O94929 683 aa5.1□□□□□ -1.59
HMGB1-204ENST00000399489 ZBTB7AO95365 584 aa5.1□□□□□ -1.59
HMGB1-204ENST00000399489 SRGNP10124 158 aa5.1□□□□□ -1.59
HMGB1-204ENST00000399489 PAMP19021 973 aa5.1□□□□□ -1.59
HMGB1-204ENST00000399489 COPB2P35606 906 aa5.1□□□□□ -1.59
HMGB1-204ENST00000399489 SLURP1P55000 103 aa5.1□□□□□ -1.59
HMGB1-204ENST00000399489 PLP2Q04941 152 aa5.1□□□□□ -1.59
HMGB1-204ENST00000399489 ITKQ08881 620 aa5.1□□□□□ -1.59
HMGB1-204ENST00000399489 PPP2R5EQ16537 467 aa5.1□□□□□ -1.59
HMGB1-204ENST00000399489 CCDC70Q6NSX1 233 aa5.1□□□□□ -1.59
HMGB1-204ENST00000399489 HDGFL2Q7Z4V5 671 aaPredicted RBP5.1□□□□□ -1.59
HMGB1-204ENST00000399489 ZBTB46Q86UZ6 589 aa5.1□□□□□ -1.59
HMGB1-204ENST00000399489 CRACR2BQ8N4Y2 399 aaPredicted RBP5.1□□□□□ -1.59
HMGB1-204ENST00000399489 RHOBTB2Q9BYZ6 727 aa5.1□□□□□ -1.59
HMGB1-204ENST00000399489 NCOA5Q9HCD5 579 aaKnown RBP5.1□□□□□ -1.59
HMGB1-204ENST00000399489 OBP2AQ9NY56 170 aa5.1□□□□□ -1.59
HMGB1-204ENST00000399489 LUZP4Q9P127 313 aa5.1□□□□□ -1.59
HMGB1-204ENST00000399489 ZNF180Q9UJW8 692 aa5.1□□□□□ -1.59
HMGB1-204ENST00000399489 BACE2Q9Y5Z0 518 aa5.1□□□□□ -1.59
HMGB1-204ENST00000399489 PHLDB1Q86UU1 1377 aa5.1□□□□□ -1.59
HMGB1-204ENST00000399489 SLC26A4O43511 780 aa5.09□□□□□ -1.59
HMGB1-204ENST00000399489 NPHS1O60500 1241 aa5.09□□□□□ -1.59
HMGB1-204ENST00000399489 RFPL1O75677 317 aa5.09□□□□□ -1.59
HMGB1-204ENST00000399489 CPEP16870 476 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 231.7 ms