RNA–Protein interactions for RNA: ENST00000372216.8

COL4A6-202, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-202ENST00000372216 PCDHA6Q9UN73 950 aa10.63□□□□□ -0.71
COL4A6-202ENST00000372216 PCDHA8Q9Y5H6 950 aa10.63□□□□□ -0.71
COL4A6-202ENST00000372216 KIF3CO14782 793 aa10.63□□□□□ -0.71
COL4A6-202ENST00000372216 ELF1P32519 619 aa10.63□□□□□ -0.71
COL4A6-202ENST00000372216 ADCY8P40145 1251 aa10.63□□□□□ -0.71
COL4A6-202ENST00000372216 SEPT2Q15019 361 aa10.63□□□□□ -0.71
COL4A6-202ENST00000372216 CCDC13Q8IYE1 715 aa10.63□□□□□ -0.71
COL4A6-202ENST00000372216 PDZD8Q8NEN9 1154 aa10.63□□□□□ -0.71
COL4A6-202ENST00000372216 P2RX5Q93086 422 aa10.63□□□□□ -0.71
COL4A6-202ENST00000372216 NLRP4Q96MN2 994 aa10.63□□□□□ -0.71
COL4A6-202ENST00000372216 YIPF2Q9BWQ6 316 aa10.63□□□□□ -0.71
COL4A6-202ENST00000372216 POLR3EQ9NVU0 708 aa10.63□□□□□ -0.71
COL4A6-202ENST00000372216 STK17AQ9UEE5 414 aa10.63□□□□□ -0.71
COL4A6-202ENST00000372216 ATP8B3O60423 1300 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 A0A1W2PQ27 194 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 A0A1W2PQ64 194 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 A0A1W2PQD8 194 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 KRIT1O00522 736 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 SMIM24O75264 130 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 TBC1D10CQ8IV04 446 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 SIRT2Q8IXJ6 389 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 CCNYQ8ND76 341 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 SPDL1Q96EA4 605 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 SH3GLB2Q9NR46 395 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 IFNAR1P17181 557 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 DDIT3P35638 169 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 BPIFB4P59827 614 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 R3HDM1Q15032 1099 aaKnown RBP10.62□□□□□ -0.71
COL4A6-202ENST00000372216 ZNF658Q5TYW1 1059 aaPredicted RBP10.62□□□□□ -0.71
COL4A6-202ENST00000372216 AFAP1L1Q8TED9 768 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 OTUD5Q96G74 571 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 ZNF521Q96K83 1311 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 A0A0G2JLW4 131 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 RNF8O76064 485 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 HEXIM1O94992 359 aaKnown RBP10.62□□□□□ -0.71
COL4A6-202ENST00000372216 KRT3P12035 628 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 INPP1P49441 399 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 STXBP2Q15833 593 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 NAA35Q5VZE5 725 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 DHTKD1Q96HY7 919 aaPredicted RBP10.62□□□□□ -0.71
COL4A6-202ENST00000372216 TUBGCP2Q9BSJ2 902 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 MMTAG2Q9BU76 263 aaKnown RBP10.62□□□□□ -0.71
COL4A6-202ENST00000372216 E9PCH4 1651 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 UTYO14607 1347 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 ABCB11O95342 1321 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 BAG2O95816 211 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 PRPSAP1Q14558 356 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 DENND2CQ68D51 928 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 MMP19Q99542 508 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 PARVGQ9HBI0 331 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 PLCB1Q9NQ66 1216 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 MADDQ8WXG6 1647 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 PLCG1P19174 1290 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 SLC9A5Q14940 896 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 FAM149B1Q96BN6 582 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 GSDMAQ96QA5 445 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 ISCA1Q9BUE6 129 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 RPF1Q9H9Y2 349 aaKnown RBP10.62□□□□□ -0.71
COL4A6-202ENST00000372216 PIDD1Q9HB75 910 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 PCDHB6Q9Y5E3 794 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 SAR1BQ9Y6B6 198 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 USP17L10C9JJH3 530 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 ZBTB5O15062 677 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 NMT2O60551 498 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 CDC25AP30304 524 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 MYO1EQ12965 1108 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 MTMR1Q13613 665 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 MTMR3Q13615 1198 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 MMEL1Q495T6 779 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.62□□□□□ -0.71
COL4A6-202ENST00000372216 SPON1Q9HCB6 807 aa10.62□□□□□ -0.71
COL4A6-202ENST00000372216 U2AF2P26368 475 aaKnown RBP eCLIP10.61□□□□□ -0.71
COL4A6-202ENST00000372216 JAK3P52333 1124 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 ZNF668Q96K58 619 aaPredicted RBP10.61□□□□□ -0.71
COL4A6-202ENST00000372216 RAB3IPQ96QF0 476 aaPredicted RBP10.61□□□□□ -0.71
COL4A6-202ENST00000372216 RIC8AQ9NPQ8 531 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 NXF1Q9UBU9 619 aaKnown RBP10.61□□□□□ -0.71
COL4A6-202ENST00000372216 RIMBP3CA6NJZ7 1639 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 RIMBP3BA6NNM3 1639 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 RIMBP3Q9UFD9 1639 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 SPATA31A1Q5TZJ5 1347 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 LMNB1P20700 586 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 ANXA13P27216 316 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 LIFRP42702 1097 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 NSUN2Q08J23 767 aaKnown RBP eCLIP10.61□□□□□ -0.713e-9■■■■■ 39.7
COL4A6-202ENST00000372216 SNX1Q13596 522 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 IQCB1Q15051 598 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 CPSF3Q9UKF6 684 aaKnown RBP10.61□□□□□ -0.71
COL4A6-202ENST00000372216 MAN1B1Q9UKM7 699 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 SUFUQ9UMX1 484 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 HYOU1Q9Y4L1 999 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 SESN3P58005 492 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 DGKHQ86XP1 1220 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 GPT2Q8TD30 523 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 TMEM47Q9BQJ4 181 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 DPH5Q9H2P9 285 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 SLC38A10Q9HBR0 1119 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 FBXO40Q9UH90 709 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 EBAG9O00559 213 aa10.61□□□□□ -0.71
COL4A6-202ENST00000372216 MYBP10242 640 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms