RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 TFAP4Q01664 338 aa15.71■□□□□ 0.11
SDC1-201ENST00000254351 ZNF211Q13398 564 aaPredicted RBP15.71■□□□□ 0.11
SDC1-201ENST00000254351 SPTY2D1Q68D10 685 aaPredicted RBP15.71■□□□□ 0.11
SDC1-201ENST00000254351 RUFY4Q6ZNE9 571 aa15.71■□□□□ 0.11
SDC1-201ENST00000254351 GLG1Q92896 1179 aa15.71■□□□□ 0.11
SDC1-201ENST00000254351 LRRC45Q96CN5 670 aa15.71■□□□□ 0.11
SDC1-201ENST00000254351 PSMD1Q99460 953 aa15.71■□□□□ 0.11
SDC1-201ENST00000254351 NUDT12Q9BQG2 462 aa15.71■□□□□ 0.11
SDC1-201ENST00000254351 ISCUQ9H1K1 167 aa15.71■□□□□ 0.11
SDC1-201ENST00000254351 TMEM260Q9NX78 707 aa15.71■□□□□ 0.11
SDC1-201ENST00000254351 AGAP1Q9UPQ3 857 aa15.71■□□□□ 0.11
SDC1-201ENST00000254351 SHANK3Q9BYB0 1731 aa15.71■□□□□ 0.11
SDC1-201ENST00000254351 SPATA31A1Q5TZJ5 1347 aa15.71■□□□□ 0.11
SDC1-201ENST00000254351 USP17L8P0C7I0 530 aa15.71■□□□□ 0.11
SDC1-201ENST00000254351 FGFR2P21802 821 aa15.71■□□□□ 0.11
SDC1-201ENST00000254351 SLC8A1P32418 973 aa15.71■□□□□ 0.11
SDC1-201ENST00000254351 TRAPPC10P48553 1259 aa15.71■□□□□ 0.11
SDC1-201ENST00000254351 PLTPP55058 493 aa15.71■□□□□ 0.11
SDC1-201ENST00000254351 CRYMQ14894 314 aa15.71■□□□□ 0.11
SDC1-201ENST00000254351 PLCB4Q15147 1175 aa15.71■□□□□ 0.11
SDC1-201ENST00000254351 NAB2Q15742 525 aa15.71■□□□□ 0.11
SDC1-201ENST00000254351 SLC44A5Q8NCS7 719 aa15.71■□□□□ 0.11
SDC1-201ENST00000254351 SIPA1L3O60292 1781 aaPredicted RBP15.71■□□□□ 0.1
SDC1-201ENST00000254351 ATXN2Q99700 1313 aaKnown RBP15.7■□□□□ 0.1
SDC1-201ENST00000254351 PPP1R12AO14974 1030 aaPredicted RBP15.7■□□□□ 0.1
SDC1-201ENST00000254351 DRD4P21917 467 aa15.7■□□□□ 0.1
SDC1-201ENST00000254351 NAPAP54920 295 aa15.7■□□□□ 0.1
SDC1-201ENST00000254351 ZKSCAN8Q15776 578 aaPredicted RBP15.7■□□□□ 0.1
SDC1-201ENST00000254351 SV2BQ7L1I2 683 aa15.7■□□□□ 0.1
SDC1-201ENST00000254351 FMNL3Q8IVF7 1028 aa15.7■□□□□ 0.1
SDC1-201ENST00000254351 METTL13Q8N6R0 699 aa15.7■□□□□ 0.1
SDC1-201ENST00000254351 ANKS1AQ92625 1134 aa15.7■□□□□ 0.1
SDC1-201ENST00000254351 C8orf37Q96NL8 207 aa15.7■□□□□ 0.1
SDC1-201ENST00000254351 MCM9Q9NXL9 1143 aa15.7■□□□□ 0.1
SDC1-201ENST00000254351 CCT8L1PA6NM43 557 aa15.7■□□□□ 0.1
SDC1-201ENST00000254351 CALM1P0DP23 149 aa15.7■□□□□ 0.1
SDC1-201ENST00000254351 CALM2P0DP24 149 aa15.7■□□□□ 0.1
SDC1-201ENST00000254351 CALM3P0DP25 149 aa15.7■□□□□ 0.1
SDC1-201ENST00000254351 CALML3P27482 149 aa15.7■□□□□ 0.1
SDC1-201ENST00000254351 TNFRSF8P28908 595 aa15.7■□□□□ 0.1
SDC1-201ENST00000254351 SARNPP82979 210 aaKnown RBP15.7■□□□□ 0.1
SDC1-201ENST00000254351 CDK17Q00537 523 aa15.7■□□□□ 0.1
SDC1-201ENST00000254351 PNMA1Q8ND90 353 aa15.7■□□□□ 0.1
SDC1-201ENST00000254351 SLC17A8Q8NDX2 589 aa15.7■□□□□ 0.1
SDC1-201ENST00000254351 LMBR1Q8WVP7 490 aa15.7■□□□□ 0.1
SDC1-201ENST00000254351 ZNF512BQ96KM6 892 aaPredicted RBP15.7■□□□□ 0.1
SDC1-201ENST00000254351 XPO6Q96QU8 1125 aaKnown RBP15.7■□□□□ 0.1
SDC1-201ENST00000254351 NPHP3-ACAD11A0A0J9YXS1 232 aa15.7■□□□□ 0.1
SDC1-201ENST00000254351 SPDYE3A6NKU9 549 aa15.7■□□□□ 0.1
SDC1-201ENST00000254351 OR52Z1P0C646 297 aa15.7■□□□□ 0.1
SDC1-201ENST00000254351 ABCB4P21439 1286 aa15.7■□□□□ 0.1
SDC1-201ENST00000254351 ASTE1Q2TB18 679 aaPredicted RBP15.7■□□□□ 0.1
SDC1-201ENST00000254351 SOGA3Q5TF21 947 aa15.7■□□□□ 0.1
SDC1-201ENST00000254351 CCDC25Q86WR0 208 aa15.7■□□□□ 0.1
SDC1-201ENST00000254351 CD302Q8IX05 232 aa15.7■□□□□ 0.1
SDC1-201ENST00000254351 RNF217Q8TC41 542 aa15.7■□□□□ 0.1
SDC1-201ENST00000254351 PARD3BQ8TEW8 1205 aa15.7■□□□□ 0.1
SDC1-201ENST00000254351 CALML4Q96GE6 196 aa15.7■□□□□ 0.1
SDC1-201ENST00000254351 NGLY1Q96IV0 654 aa15.7■□□□□ 0.1
SDC1-201ENST00000254351 AZI2Q9H6S1 392 aa15.7■□□□□ 0.1
SDC1-201ENST00000254351 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.7■□□□□ 0.12e-7■■■■□ 20.1
SDC1-201ENST00000254351 PNPLA7Q6ZV29 1317 aa15.69■□□□□ 0.1
SDC1-201ENST00000254351 MRPL12P52815 198 aaKnown RBP15.69■□□□□ 0.1
SDC1-201ENST00000254351 PTK2Q05397 1052 aa15.69■□□□□ 0.1
SDC1-201ENST00000254351 CHRNDQ07001 517 aa15.69■□□□□ 0.1
SDC1-201ENST00000254351 PEX26Q7Z412 305 aa15.69■□□□□ 0.1
SDC1-201ENST00000254351 ANKS4BQ8N8V4 417 aa15.69■□□□□ 0.1
SDC1-201ENST00000254351 DYDC1Q8WWB3 177 aa15.69■□□□□ 0.1
SDC1-201ENST00000254351 SPAG5Q96R06 1193 aa15.69■□□□□ 0.1
SDC1-201ENST00000254351 ATP6V0A4Q9HBG4 840 aa15.69■□□□□ 0.1
SDC1-201ENST00000254351 SEPT11Q9NVA2 429 aaKnown RBP15.69■□□□□ 0.1
SDC1-201ENST00000254351 DBR1Q9UK59 544 aaKnown RBP15.69■□□□□ 0.1
SDC1-201ENST00000254351 WNK3Q9BYP7 1800 aa15.69■□□□□ 0.1
SDC1-201ENST00000254351 SPATA31A5Q5VU36 1347 aa15.69■□□□□ 0.1
SDC1-201ENST00000254351 SPATA31A7Q8IWB4 1347 aa15.69■□□□□ 0.1
SDC1-201ENST00000254351 NOL4O94818 638 aa15.69■□□□□ 0.1
SDC1-201ENST00000254351 STARD3NLO95772 234 aa15.69■□□□□ 0.1
SDC1-201ENST00000254351 NKX1-1Q15270 411 aaPredicted RBP15.69■□□□□ 0.1
SDC1-201ENST00000254351 TCERG1LQ5VWI1 586 aa15.69■□□□□ 0.1
SDC1-201ENST00000254351 KCNK18Q7Z418 384 aa15.69■□□□□ 0.1
SDC1-201ENST00000254351 MREGQ8N565 214 aa15.69■□□□□ 0.1
SDC1-201ENST00000254351 CHORDC1Q9UHD1 332 aaPredicted RBP15.69■□□□□ 0.1
SDC1-201ENST00000254351 SNX24Q9Y343 169 aa15.69■□□□□ 0.1
SDC1-201ENST00000254351 FLT1P17948 1338 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 MARCH6O60337 910 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 FGGP02679 453 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 XRCC4Q13426 336 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 AADACL2Q6P093 401 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 TLDC1Q6P9B6 456 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 TMED8Q6PL24 325 aaPredicted RBP15.68■□□□□ 0.1
SDC1-201ENST00000254351 CCDC50Q8IVM0 306 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 RIOK1Q9BRS2 568 aaKnown RBP15.68■□□□□ 0.1
SDC1-201ENST00000254351 CDCA7Q9BWT1 371 aaPredicted RBP15.68■□□□□ 0.1
SDC1-201ENST00000254351 TFCP2L1Q9NZI6 479 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 ATP6V0A2Q9Y487 856 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 MROH5Q6ZUA9 1318 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 CYTH3O43739 400 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 ORC4O43929 436 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 MGRN1O60291 552 aa15.68■□□□□ 0.1
SDC1-201ENST00000254351 AP1G2O75843 785 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 164.9 ms