RNA–Protein interactions for RNA: ENST00000636674.1

CLN6-215, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 2,005 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-215ENST00000636674 GDF3Q9NR23 364 aa16.06■□□□□ 0.16
CLN6-215ENST00000636674 KDM3AQ9Y4C1 1321 aa16.06■□□□□ 0.16
CLN6-215ENST00000636674 GREB1LQ9C091 1923 aaPredicted RBP16.05■□□□□ 0.16
CLN6-215ENST00000636674 GRIN2DO15399 1336 aa16.05■□□□□ 0.16
CLN6-215ENST00000636674 IGKV6D-41A0A0C4DH26 115 aa16.05■□□□□ 0.16
CLN6-215ENST00000636674 CPP00450 1065 aa16.05■□□□□ 0.16
CLN6-215ENST00000636674 SMIM5Q71RC9 77 aa16.05■□□□□ 0.16
CLN6-215ENST00000636674 SLF2Q8IX21 1173 aa16.05■□□□□ 0.16
CLN6-215ENST00000636674 EFCAB13Q8IY85 973 aa16.05■□□□□ 0.16
CLN6-215ENST00000636674 CCDC24Q8N4L8 307 aa16.05■□□□□ 0.16
CLN6-215ENST00000636674 MREGQ8N565 214 aa16.05■□□□□ 0.16
CLN6-215ENST00000636674 UBA5Q9GZZ9 404 aa16.05■□□□□ 0.16
CLN6-215ENST00000636674 VAT1LQ9HCJ6 419 aa16.05■□□□□ 0.16
CLN6-215ENST00000636674 CD209Q9NNX6 404 aa16.05■□□□□ 0.16
CLN6-215ENST00000636674 RBM12Q9NTZ6 932 aaKnown RBP16.05■□□□□ 0.16
CLN6-215ENST00000636674 STK32BQ9NY57 414 aa16.05■□□□□ 0.16
CLN6-215ENST00000636674 MTMR4Q9NYA4 1195 aa16.05■□□□□ 0.16
CLN6-215ENST00000636674 PCDHGC5Q9Y5F6 944 aa16.05■□□□□ 0.16
CLN6-215ENST00000636674 GNPATO15228 680 aa16.04■□□□□ 0.16
CLN6-215ENST00000636674 TLR2O60603 784 aa16.04■□□□□ 0.16
CLN6-215ENST00000636674 GCFC2P16383 781 aaKnown RBP16.04■□□□□ 0.16
CLN6-215ENST00000636674 KCNQ4P56696 695 aa16.04■□□□□ 0.16
CLN6-215ENST00000636674 RASSF7Q02833 373 aa16.04■□□□□ 0.16
CLN6-215ENST00000636674 NAB2Q15742 525 aa16.04■□□□□ 0.16
CLN6-215ENST00000636674 FAM26FQ5R3K3 315 aa16.04■□□□□ 0.16
CLN6-215ENST00000636674 FAM83BQ5T0W9 1011 aa16.04■□□□□ 0.16
CLN6-215ENST00000636674 SFMBT2Q5VUG0 894 aa16.04■□□□□ 0.16
CLN6-215ENST00000636674 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.04■□□□□ 0.16
CLN6-215ENST00000636674 TRIM59Q8IWR1 403 aa16.04■□□□□ 0.16
CLN6-215ENST00000636674 IFT20Q8IY31 132 aa16.04■□□□□ 0.16
CLN6-215ENST00000636674 TSEN2Q8NCE0 465 aaKnown RBP16.04■□□□□ 0.16
CLN6-215ENST00000636674 PPM1EQ8WY54 764 aa16.04■□□□□ 0.16
CLN6-215ENST00000636674 CAPS2Q9BXY5 557 aa16.04■□□□□ 0.16
CLN6-215ENST00000636674 EFCC1Q9HA90 598 aa16.04■□□□□ 0.16
CLN6-215ENST00000636674 ATP6V0A2Q9Y487 856 aa16.04■□□□□ 0.16
CLN6-215ENST00000636674 EIF3HO15372 352 aaKnown RBP eCLIP16.04■□□□□ 0.16
CLN6-215ENST00000636674 NCK2O43639 380 aa16.04■□□□□ 0.16
CLN6-215ENST00000636674 HSF2BPO75031 334 aa16.04■□□□□ 0.16
CLN6-215ENST00000636674 CXCR5P32302 372 aa16.04■□□□□ 0.16
CLN6-215ENST00000636674 TDRD12Q587J7 1177 aaKnown RBP16.04■□□□□ 0.16
CLN6-215ENST00000636674 GLIS3Q8NEA6 775 aa16.04■□□□□ 0.16
CLN6-215ENST00000636674 NT5C3AQ9H0P0 336 aa16.04■□□□□ 0.16
CLN6-215ENST00000636674 CCNL1Q9UK58 526 aaPredicted RBP16.04■□□□□ 0.16
CLN6-215ENST00000636674 RTCBQ9Y3I0 505 aaKnown RBP16.04■□□□□ 0.16
CLN6-215ENST00000636674 MYO3BQ8WXR4 1341 aa16.03■□□□□ 0.16
CLN6-215ENST00000636674 BTNL10A8MVZ5 291 aa16.03■□□□□ 0.16
CLN6-215ENST00000636674 CES2O00748 559 aa16.03■□□□□ 0.16
CLN6-215ENST00000636674 SLC7A5Q01650 507 aa16.03■□□□□ 0.16
CLN6-215ENST00000636674 GABPAQ06546 454 aa16.03■□□□□ 0.16
CLN6-215ENST00000636674 SLC15A2Q16348 729 aa16.03■□□□□ 0.16
CLN6-215ENST00000636674 SLC18A3Q16572 532 aa16.03■□□□□ 0.16
CLN6-215ENST00000636674 CCDC40Q4G0X9 1142 aa16.03■□□□□ 0.16
CLN6-215ENST00000636674 HAS1Q92839 578 aa16.03■□□□□ 0.16
CLN6-215ENST00000636674 COA7Q96BR5 231 aa16.03■□□□□ 0.16
CLN6-215ENST00000636674 NAP1L4Q99733 375 aaKnown RBP16.03■□□□□ 0.16
CLN6-215ENST00000636674 TANGO6Q9C0B7 1094 aa16.03■□□□□ 0.16
CLN6-215ENST00000636674 EHD2Q9NZN4 543 aa16.03■□□□□ 0.16
CLN6-215ENST00000636674 PCDHA2Q9Y5H9 948 aa16.03■□□□□ 0.16
CLN6-215ENST00000636674 ATP8B3O60423 1300 aa16.03■□□□□ 0.16
CLN6-215ENST00000636674 PNMA6FA0A0J9YX94 578 aa16.02■□□□□ 0.16
CLN6-215ENST00000636674 ATP2B2Q01814 1243 aa16.02■□□□□ 0.16
CLN6-215ENST00000636674 PAK2Q13177 524 aa16.02■□□□□ 0.16
CLN6-215ENST00000636674 LRRC41Q15345 812 aa16.02■□□□□ 0.16
CLN6-215ENST00000636674 ECM1Q16610 540 aa16.02■□□□□ 0.16
CLN6-215ENST00000636674 SLC51AQ86UW1 340 aa16.02■□□□□ 0.16
CLN6-215ENST00000636674 C1orf131Q8NDD1 294 aaKnown RBP16.02■□□□□ 0.16
CLN6-215ENST00000636674 INPP4AQ96PE3 977 aaPredicted RBP16.02■□□□□ 0.16
CLN6-215ENST00000636674 RUFY1Q96T51 708 aa16.02■□□□□ 0.16
CLN6-215ENST00000636674 PANK4Q9NVE7 773 aa16.02■□□□□ 0.16
CLN6-215ENST00000636674 SMARCAL1Q9NZC9 954 aa16.02■□□□□ 0.16
CLN6-215ENST00000636674 AIPL1Q9NZN9 384 aa16.02■□□□□ 0.16
CLN6-215ENST00000636674 DDX25Q9UHL0 483 aaKnown RBP16.02■□□□□ 0.16
CLN6-215ENST00000636674 FRMPD2Q68DX3 1309 aaPredicted RBP16.02■□□□□ 0.15
CLN6-215ENST00000636674 LRRC37AA6NMS7 1700 aa16.02■□□□□ 0.15
CLN6-215ENST00000636674 LTBP1Q14766 1721 aa16.02■□□□□ 0.15
CLN6-215ENST00000636674 TRAF5O00463 557 aa16.02■□□□□ 0.15
CLN6-215ENST00000636674 BUB1O43683 1085 aa16.02■□□□□ 0.15
CLN6-215ENST00000636674 ATP2B4P23634 1241 aa16.02■□□□□ 0.15
CLN6-215ENST00000636674 HMGB2P26583 209 aaKnown RBP16.02■□□□□ 0.15
CLN6-215ENST00000636674 MATR3P43243 847 aaKnown RBP eCLIP16.02■□□□□ 0.15
CLN6-215ENST00000636674 TTMPQ5BVD1 217 aa16.02■□□□□ 0.15
CLN6-215ENST00000636674 MEI1Q5TIA1 1274 aa16.02■□□□□ 0.15
CLN6-215ENST00000636674 EMC10Q5UCC4 262 aa16.02■□□□□ 0.15
CLN6-215ENST00000636674 CD302Q8IX05 232 aa16.02■□□□□ 0.15
CLN6-215ENST00000636674 ANKRD13CQ8N6S4 541 aa16.02■□□□□ 0.15
CLN6-215ENST00000636674 TBC1D22AQ8WUA7 517 aa16.02■□□□□ 0.15
CLN6-215ENST00000636674 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.02■□□□□ 0.153e-10■■■■■ 88.3
CLN6-215ENST00000636674 ARHGEF1Q92888 912 aaKnown RBP16.02■□□□□ 0.15
CLN6-215ENST00000636674 PSMB7Q99436 277 aa16.02■□□□□ 0.15
CLN6-215ENST00000636674 LSM14BQ9BX40 385 aaKnown RBP16.02■□□□□ 0.15
CLN6-215ENST00000636674 BMP2KQ9NSY1 1161 aaPredicted RBP16.02■□□□□ 0.15
CLN6-215ENST00000636674 SWAP70Q9UH65 585 aa16.02■□□□□ 0.15
CLN6-215ENST00000636674 ATXN2Q99700 1313 aaKnown RBP16.01■□□□□ 0.15
CLN6-215ENST00000636674 FRMD3A2A2Y4 597 aa16.01■□□□□ 0.15
CLN6-215ENST00000636674 TNNI2P48788 182 aa16.01■□□□□ 0.15
CLN6-215ENST00000636674 GPSM2P81274 684 aa16.01■□□□□ 0.15
CLN6-215ENST00000636674 ZNF543Q08ER8 600 aa16.01■□□□□ 0.15
CLN6-215ENST00000636674 CCDC65Q8IXS2 484 aa16.01■□□□□ 0.15
CLN6-215ENST00000636674 IQCKQ8N0W5 287 aa16.01■□□□□ 0.15
CLN6-215ENST00000636674 EIF1ADQ8N9N8 165 aaKnown RBP16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms