RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 KCNH7Q9NS40 1196 aa14.79□□□□□ -0.04
CLK3-224ENST00000568605 MYH15Q9Y2K3 1946 aa14.79□□□□□ -0.04
CLK3-224ENST00000568605 KIF3AQ9Y496 699 aa14.79□□□□□ -0.04
CLK3-224ENST00000568605 ARID2Q68CP9 1835 aa14.78□□□□□ -0.04
CLK3-224ENST00000568605 NFASCO94856 1347 aa14.78□□□□□ -0.04
CLK3-224ENST00000568605 CCDC194A0A1B0GVG4 234 aa14.78□□□□□ -0.04
CLK3-224ENST00000568605 F2P00734 622 aa14.78□□□□□ -0.04
CLK3-224ENST00000568605 HOXD8P13378 290 aaPredicted RBP14.78□□□□□ -0.04
CLK3-224ENST00000568605 KCNA2P16389 499 aa14.78□□□□□ -0.04
CLK3-224ENST00000568605 SYN1P17600 705 aa14.78□□□□□ -0.04
CLK3-224ENST00000568605 CDK7P50613 346 aa14.78□□□□□ -0.04
CLK3-224ENST00000568605 PSMC6P62333 389 aa14.78□□□□□ -0.04
CLK3-224ENST00000568605 SP2Q02086 613 aa14.78□□□□□ -0.04
CLK3-224ENST00000568605 NONOQ15233 471 aaKnown RBP eCLIP14.78□□□□□ -0.045e-7■■□□□ 13.6
CLK3-224ENST00000568605 HSDL1Q3SXM5 330 aa14.78□□□□□ -0.04
CLK3-224ENST00000568605 FAM126BQ8IXS8 530 aa14.78□□□□□ -0.04
CLK3-224ENST00000568605 TMEM39AQ9NV64 488 aa14.78□□□□□ -0.04
CLK3-224ENST00000568605 ZNF215Q9UL58 517 aaPredicted RBP14.78□□□□□ -0.04
CLK3-224ENST00000568605 EVPLQ92817 2033 aa14.78□□□□□ -0.04
CLK3-224ENST00000568605 SORBS3O60504 671 aa14.77□□□□□ -0.05
CLK3-224ENST00000568605 SUPT20HL2P0C7V6 817 aa14.77□□□□□ -0.05
CLK3-224ENST00000568605 ZNF286BP0CG31 522 aa14.77□□□□□ -0.05
CLK3-224ENST00000568605 KRT2P35908 639 aa14.77□□□□□ -0.05
CLK3-224ENST00000568605 USP11P51784 963 aa14.77□□□□□ -0.05
CLK3-224ENST00000568605 CHMP4BP1P59074 171 aa14.77□□□□□ -0.05
CLK3-224ENST00000568605 PLA2G4DQ86XP0 818 aa14.77□□□□□ -0.05
CLK3-224ENST00000568605 FAM184AQ8NB25 1140 aa14.77□□□□□ -0.05
CLK3-224ENST00000568605 SLC43A3Q8NBI5 491 aa14.77□□□□□ -0.05
CLK3-224ENST00000568605 CRYGNQ8WXF5 182 aa14.77□□□□□ -0.05
CLK3-224ENST00000568605 JPH1Q9HDC5 661 aaPredicted RBP14.77□□□□□ -0.05
CLK3-224ENST00000568605 PKD2L1Q9P0L9 805 aa14.77□□□□□ -0.05
CLK3-224ENST00000568605 KCNJ14Q9UNX9 436 aa14.77□□□□□ -0.05
CLK3-224ENST00000568605 GBF1Q92538 1859 aa14.77□□□□□ -0.05
CLK3-224ENST00000568605 SIP14410 1827 aa14.76□□□□□ -0.05
CLK3-224ENST00000568605 MEIS1O00470 390 aa14.76□□□□□ -0.05
CLK3-224ENST00000568605 JAK2O60674 1132 aa14.76□□□□□ -0.05
CLK3-224ENST00000568605 LGALS2P05162 132 aa14.76□□□□□ -0.05
CLK3-224ENST00000568605 RAG1P15918 1043 aa14.76□□□□□ -0.05
CLK3-224ENST00000568605 PSEN2P49810 448 aa14.76□□□□□ -0.05
CLK3-224ENST00000568605 SP4Q02446 784 aa14.76□□□□□ -0.05
CLK3-224ENST00000568605 MFSD10Q14728 455 aa14.76□□□□□ -0.05
CLK3-224ENST00000568605 SAFBQ15424 915 aaKnown RBP eCLIP14.76□□□□□ -0.05
CLK3-224ENST00000568605 NBPF20Q3BBV1 942 aa14.76□□□□□ -0.05
CLK3-224ENST00000568605 C7orf31Q8N865 590 aa14.76□□□□□ -0.05
CLK3-224ENST00000568605 TBCKQ8TEA7 893 aa14.76□□□□□ -0.05
CLK3-224ENST00000568605 GPR20Q99678 358 aa14.76□□□□□ -0.05
CLK3-224ENST00000568605 NAP1L4Q99733 375 aaKnown RBP14.76□□□□□ -0.05
CLK3-224ENST00000568605 SLC9A2Q9UBY0 812 aa14.76□□□□□ -0.05
CLK3-224ENST00000568605 NOD1Q9Y239 953 aa14.76□□□□□ -0.05
CLK3-224ENST00000568605 TRIOBPQ9H2D6 2365 aa14.75□□□□□ -0.05
CLK3-224ENST00000568605 EMSYQ7Z589 1322 aa14.75□□□□□ -0.05
CLK3-224ENST00000568605 IGLV3-22A0A075B6J6 115 aa14.75□□□□□ -0.05
CLK3-224ENST00000568605 FAM86B1E9PN63 330 aa14.75□□□□□ -0.05
CLK3-224ENST00000568605 KIAA0355O15063 1070 aa14.75□□□□□ -0.05
CLK3-224ENST00000568605 FAM86B2P0C5J1 330 aa14.75□□□□□ -0.05
CLK3-224ENST00000568605 FDPSP14324 419 aaKnown RBP14.75□□□□□ -0.05
CLK3-224ENST00000568605 CIITAP33076 1130 aa14.75□□□□□ -0.05
CLK3-224ENST00000568605 FAAP100Q0VG06 881 aa14.75□□□□□ -0.05
CLK3-224ENST00000568605 ST3GAL1Q11201 340 aa14.75□□□□□ -0.05
CLK3-224ENST00000568605 KIAA0753Q2KHM9 967 aa14.75□□□□□ -0.05
CLK3-224ENST00000568605 MOXD1Q6UVY6 613 aa14.75□□□□□ -0.05
CLK3-224ENST00000568605 CHRDL2Q6WN34 429 aa14.75□□□□□ -0.05
CLK3-224ENST00000568605 SESTD1Q86VW0 696 aa14.75□□□□□ -0.05
CLK3-224ENST00000568605 AGO4Q9HCK5 861 aaKnown RBP14.75□□□□□ -0.05
CLK3-224ENST00000568605 TBX21Q9UL17 535 aa14.75□□□□□ -0.05
CLK3-224ENST00000568605 GRIN2DO15399 1336 aa14.74□□□□□ -0.05
CLK3-224ENST00000568605 A0A1W2PPC1 479 aa14.74□□□□□ -0.05
CLK3-224ENST00000568605 H3BRB1 525 aa14.74□□□□□ -0.05
CLK3-224ENST00000568605 M0R2N6 131 aa14.74□□□□□ -0.05
CLK3-224ENST00000568605 IPO5O00410 1097 aaKnown RBP14.74□□□□□ -0.05
CLK3-224ENST00000568605 B4GALT4O60513 344 aa14.74□□□□□ -0.05
CLK3-224ENST00000568605 ATP9AO75110 1047 aa14.74□□□□□ -0.05
CLK3-224ENST00000568605 CD4P01730 458 aa14.74□□□□□ -0.05
CLK3-224ENST00000568605 MMP1P03956 469 aa14.74□□□□□ -0.05
CLK3-224ENST00000568605 TCF7P36402 384 aaPredicted RBP14.74□□□□□ -0.05
CLK3-224ENST00000568605 MAGEA10P43363 369 aaPredicted RBP14.74□□□□□ -0.05
CLK3-224ENST00000568605 NPY5RQ15761 445 aa14.74□□□□□ -0.05
CLK3-224ENST00000568605 PRR16Q569H4 304 aa14.74□□□□□ -0.05
CLK3-224ENST00000568605 CCDC155Q8N6L0 562 aa14.74□□□□□ -0.05
CLK3-224ENST00000568605 CYP2W1Q8TAV3 490 aa14.74□□□□□ -0.05
CLK3-224ENST00000568605 SEPT1Q8WYJ6 367 aa14.74□□□□□ -0.05
CLK3-224ENST00000568605 KAT2BQ92831 832 aa14.74□□□□□ -0.05
CLK3-224ENST00000568605 C8orf76Q96K31 380 aa14.74□□□□□ -0.05
CLK3-224ENST00000568605 ZNF577Q9BSK1 485 aa14.74□□□□□ -0.05
CLK3-224ENST00000568605 TUT1Q9H6E5 874 aaKnown RBP14.74□□□□□ -0.05
CLK3-224ENST00000568605 TBC1D22BQ9NU19 505 aa14.74□□□□□ -0.05
CLK3-224ENST00000568605 MICAL3Q7RTP6 2002 aa14.73□□□□□ -0.05
CLK3-224ENST00000568605 ADAMTS3O15072 1205 aa14.73□□□□□ -0.05
CLK3-224ENST00000568605 ARP10275 920 aa14.73□□□□□ -0.05
CLK3-224ENST00000568605 GCFC2P16383 781 aaKnown RBP14.73□□□□□ -0.05
CLK3-224ENST00000568605 MDM2Q00987 491 aaPredicted RBP14.73□□□□□ -0.05
CLK3-224ENST00000568605 KRT40Q6A162 431 aa14.73□□□□□ -0.05
CLK3-224ENST00000568605 NEK8Q86SG6 692 aa14.73□□□□□ -0.05
CLK3-224ENST00000568605 TNPO1Q92973 898 aaKnown RBP14.73□□□□□ -0.05
CLK3-224ENST00000568605 GDF15Q99988 308 aa14.73□□□□□ -0.05
CLK3-224ENST00000568605 UBE2OQ9C0C9 1292 aaKnown RBP14.73□□□□□ -0.05
CLK3-224ENST00000568605 AZI2Q9H6S1 392 aa14.73□□□□□ -0.05
CLK3-224ENST00000568605 ERAP1Q9NZ08 941 aa14.73□□□□□ -0.05
CLK3-224ENST00000568605 GTF2IRD1Q9UHL9 959 aa14.73□□□□□ -0.05
CLK3-224ENST00000568605 DDX39AO00148 427 aaKnown RBP14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms