RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 NTRK3Q16288 839 aa13.47□□□□□ -0.25
LDLR-212ENST00000560467 CMTR1Q8N1G2 835 aaKnown RBP13.47□□□□□ -0.25
LDLR-212ENST00000560467 SRBD1Q8N5C6 995 aaKnown RBP13.47□□□□□ -0.25
LDLR-212ENST00000560467 ZNF713Q8N859 430 aaPredicted RBP13.47□□□□□ -0.25
LDLR-212ENST00000560467 CCDC148Q8NFR7 591 aa13.47□□□□□ -0.25
LDLR-212ENST00000560467 TSPYL2Q9H2G4 693 aaPredicted RBP13.47□□□□□ -0.25
LDLR-212ENST00000560467 ZSCAN16Q9H4T2 348 aaPredicted RBP13.47□□□□□ -0.25
LDLR-212ENST00000560467 MTCH2Q9Y6C9 303 aa13.47□□□□□ -0.25
LDLR-212ENST00000560467 PRRC2BQ5JSZ5 2229 aaKnown RBP13.46□□□□□ -0.25
LDLR-212ENST00000560467 XIRP2A4UGR9 3374 aa13.46□□□□□ -0.25
LDLR-212ENST00000560467 RBAK-RBAKDNI3L0D1 243 aa13.46□□□□□ -0.25
LDLR-212ENST00000560467 PPFIA3O75145 1194 aa13.46□□□□□ -0.25
LDLR-212ENST00000560467 SCG2P13521 617 aa13.46□□□□□ -0.25
LDLR-212ENST00000560467 PDE4DQ08499 809 aa13.46□□□□□ -0.25
LDLR-212ENST00000560467 ST3GAL1Q11201 340 aa13.46□□□□□ -0.25
LDLR-212ENST00000560467 RNF207Q6ZRF8 634 aa13.46□□□□□ -0.25
LDLR-212ENST00000560467 SPRED2Q7Z698 418 aa13.46□□□□□ -0.25
LDLR-212ENST00000560467 STAG2Q8N3U4 1231 aa13.46□□□□□ -0.25
LDLR-212ENST00000560467 PIBF1Q8WXW3 757 aa13.46□□□□□ -0.25
LDLR-212ENST00000560467 ARNTL2Q8WYA1 636 aa13.46□□□□□ -0.25
LDLR-212ENST00000560467 UBA5Q9GZZ9 404 aa13.46□□□□□ -0.25
LDLR-212ENST00000560467 SH3GLB2Q9NR46 395 aa13.46□□□□□ -0.25
LDLR-212ENST00000560467 LCTP09848 1927 aa13.46□□□□□ -0.25
LDLR-212ENST00000560467 LOC102724159A0A0B4J2E5 919 aa13.45□□□□□ -0.26
LDLR-212ENST00000560467 PNMA6FA0A0J9YX94 578 aa13.45□□□□□ -0.26
LDLR-212ENST00000560467 GTPBP6O43824 516 aaPredicted RBP13.45□□□□□ -0.26
LDLR-212ENST00000560467 ARIH2O95376 493 aa13.45□□□□□ -0.26
LDLR-212ENST00000560467 IQCF3P0C7M6 154 aa13.45□□□□□ -0.26
LDLR-212ENST00000560467 ACTN1P12814 892 aa13.45□□□□□ -0.26
LDLR-212ENST00000560467 EDNRBP24530 442 aa13.45□□□□□ -0.26
LDLR-212ENST00000560467 NLRP5P59047 1200 aa13.45□□□□□ -0.26
LDLR-212ENST00000560467 CHMP4BP1P59074 171 aa13.45□□□□□ -0.26
LDLR-212ENST00000560467 RPS6P62753 249 aaKnown RBP13.45□□□□□ -0.26
LDLR-212ENST00000560467 TAP1Q03518 808 aa13.45□□□□□ -0.26
LDLR-212ENST00000560467 PWP2Q15269 919 aaKnown RBP13.45□□□□□ -0.26
LDLR-212ENST00000560467 PFKFB3Q16875 520 aaPredicted RBP13.45□□□□□ -0.26
LDLR-212ENST00000560467 CSPP1Q1MSJ5 1256 aa13.45□□□□□ -0.26
LDLR-212ENST00000560467 GALNT17Q6IS24 598 aa13.45□□□□□ -0.26
LDLR-212ENST00000560467 HEATR3Q7Z4Q2 680 aa13.45□□□□□ -0.26
LDLR-212ENST00000560467 HOMER1Q86YM7 354 aa13.45□□□□□ -0.26
LDLR-212ENST00000560467 FBXO18Q8NFZ0 1043 aa13.45□□□□□ -0.26
LDLR-212ENST00000560467 BICD2Q8TD16 824 aa13.45□□□□□ -0.26
LDLR-212ENST00000560467 SCFD2Q8WU76 684 aa13.45□□□□□ -0.26
LDLR-212ENST00000560467 SLC9A7Q96T83 725 aa13.45□□□□□ -0.26
LDLR-212ENST00000560467 FTOQ9C0B1 505 aaKnown RBP eCLIP13.45□□□□□ -0.26
LDLR-212ENST00000560467 GLT8D2Q9H1C3 349 aa13.45□□□□□ -0.26
LDLR-212ENST00000560467 A6NJR5 290 aa13.44□□□□□ -0.26
LDLR-212ENST00000560467 PITPNM1O00562 1244 aa13.44□□□□□ -0.26
LDLR-212ENST00000560467 FDPSP14324 419 aaKnown RBP13.44□□□□□ -0.26
LDLR-212ENST00000560467 GNA11P29992 359 aa13.44□□□□□ -0.26
LDLR-212ENST00000560467 RFC2P35250 354 aa13.44□□□□□ -0.26
LDLR-212ENST00000560467 DDIT3P35638 169 aa13.44□□□□□ -0.26
LDLR-212ENST00000560467 FOSBP53539 338 aa13.44□□□□□ -0.26
LDLR-212ENST00000560467 BRDTQ58F21 947 aaPredicted RBP13.44□□□□□ -0.26
LDLR-212ENST00000560467 FOXD4L5Q5VV16 416 aaPredicted RBP13.44□□□□□ -0.26
LDLR-212ENST00000560467 NFRKBQ6P4R8 1299 aa13.44□□□□□ -0.26
LDLR-212ENST00000560467 HERC6Q8IVU3 1022 aa13.44□□□□□ -0.26
LDLR-212ENST00000560467 ADGRF4Q8IZF3 695 aa13.44□□□□□ -0.26
LDLR-212ENST00000560467 RETREG2Q8NC44 543 aa13.44□□□□□ -0.26
LDLR-212ENST00000560467 FOXD4L4Q8WXT5 416 aaPredicted RBP13.44□□□□□ -0.26
LDLR-212ENST00000560467 RIOX1Q9H6W3 641 aa13.44□□□□□ -0.26
LDLR-212ENST00000560467 C6orf50Q9HD87 102 aa13.44□□□□□ -0.26
LDLR-212ENST00000560467 ZBTB5O15062 677 aa13.43□□□□□ -0.26
LDLR-212ENST00000560467 NKRFO15226 690 aaKnown RBP eCLIP13.43□□□□□ -0.26
LDLR-212ENST00000560467 BRD1O95696 1058 aa13.43□□□□□ -0.26
LDLR-212ENST00000560467 TXNP10599 105 aaKnown RBP13.43□□□□□ -0.26
LDLR-212ENST00000560467 POU3F3P20264 500 aaPredicted RBP13.43□□□□□ -0.26
LDLR-212ENST00000560467 PTMSP20962 102 aa13.43□□□□□ -0.26
LDLR-212ENST00000560467 PLA2G5P39877 138 aa13.43□□□□□ -0.26
LDLR-212ENST00000560467 NAPAP54920 295 aa13.43□□□□□ -0.26
LDLR-212ENST00000560467 AAK1Q2M2I8 961 aa13.43□□□□□ -0.26
LDLR-212ENST00000560467 BRAPQ7Z569 592 aa13.43□□□□□ -0.26
LDLR-212ENST00000560467 TMCO2Q7Z6W1 182 aaPredicted RBP13.43□□□□□ -0.26
LDLR-212ENST00000560467 ZNF396Q96N95 335 aaPredicted RBP13.43□□□□□ -0.26
LDLR-212ENST00000560467 CTAGE1Q96RT6 745 aa13.43□□□□□ -0.26
LDLR-212ENST00000560467 CPVLQ9H3G5 476 aa13.43□□□□□ -0.26
LDLR-212ENST00000560467 MTMR6Q9Y217 621 aa13.43□□□□□ -0.26
LDLR-212ENST00000560467 NOD1Q9Y239 953 aa13.43□□□□□ -0.26
LDLR-212ENST00000560467 CNTNAP5Q8WYK1 1306 aa13.42□□□□□ -0.26
LDLR-212ENST00000560467 GBF1Q92538 1859 aa13.42□□□□□ -0.26
LDLR-212ENST00000560467 LCHNA4D1U4 455 aa13.42□□□□□ -0.26
LDLR-212ENST00000560467 KPNA6O60684 536 aa13.42□□□□□ -0.26
LDLR-212ENST00000560467 F13A1P00488 732 aa13.42□□□□□ -0.26
LDLR-212ENST00000560467 KRT2P35908 639 aa13.42□□□□□ -0.26
LDLR-212ENST00000560467 MRPL12P52815 198 aaKnown RBP13.42□□□□□ -0.26
LDLR-212ENST00000560467 GUCY1B3Q02153 619 aa13.42□□□□□ -0.26
LDLR-212ENST00000560467 FUT2Q10981 343 aa13.42□□□□□ -0.26
LDLR-212ENST00000560467 GRB10Q13322 594 aa13.42□□□□□ -0.26
LDLR-212ENST00000560467 BFSP2Q13515 415 aa13.42□□□□□ -0.26
LDLR-212ENST00000560467 PTGISQ16647 500 aa13.42□□□□□ -0.26
LDLR-212ENST00000560467 USH1GQ495M9 461 aa13.42□□□□□ -0.26
LDLR-212ENST00000560467 PHOSPHO2Q8TCD6 241 aa13.42□□□□□ -0.26
LDLR-212ENST00000560467 AFG1LQ8WV93 481 aa13.42□□□□□ -0.26
LDLR-212ENST00000560467 PIGSQ96S52 555 aa13.42□□□□□ -0.26
LDLR-212ENST00000560467 AMNQ9BXJ7 453 aa13.42□□□□□ -0.26
LDLR-212ENST00000560467 BARHL2Q9NY43 387 aa13.42□□□□□ -0.26
LDLR-212ENST00000560467 CFAP45Q9UL16 551 aa13.42□□□□□ -0.26
LDLR-212ENST00000560467 REV3LO60673 3130 aa13.42□□□□□ -0.26
LDLR-212ENST00000560467 SCN10AQ9Y5Y9 1956 aa13.41□□□□□ -0.26
LDLR-212ENST00000560467 hCG_1642624A0A1W2PR95 340 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms