RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 SH3RF1Q7Z6J0 888 aa15.22■□□□□ 0.03
VPS28-210ENST00000529182 PLA2G4DQ86XP0 818 aa15.22■□□□□ 0.03
VPS28-210ENST00000529182 KAT2BQ92831 832 aa15.22■□□□□ 0.03
VPS28-210ENST00000529182 CDHR1Q96JP9 859 aa15.22■□□□□ 0.03
VPS28-210ENST00000529182 SENP7Q9BQF6 1050 aa15.22■□□□□ 0.03
VPS28-210ENST00000529182 DOCK5Q9H7D0 1870 aa15.22■□□□□ 0.03
VPS28-210ENST00000529182 NOP56O00567 594 aaKnown RBP15.21■□□□□ 0.03
VPS28-210ENST00000529182 MAFGO15525 162 aa15.21■□□□□ 0.03
VPS28-210ENST00000529182 HOXD8P13378 290 aaPredicted RBP15.21■□□□□ 0.03
VPS28-210ENST00000529182 MCM2P49736 904 aa15.21■□□□□ 0.03
VPS28-210ENST00000529182 NR5A1Q13285 461 aa15.21■□□□□ 0.03
VPS28-210ENST00000529182 ITGB3BPQ13352 177 aaPredicted RBP15.21■□□□□ 0.03
VPS28-210ENST00000529182 INF2Q27J81 1249 aa15.21■□□□□ 0.03
VPS28-210ENST00000529182 NBPF20Q3BBV1 942 aa15.21■□□□□ 0.03
VPS28-210ENST00000529182 EARS2Q5JPH6 523 aaKnown RBP15.21■□□□□ 0.03
VPS28-210ENST00000529182 PRPF38BQ5VTL8 546 aaKnown RBP15.21■□□□□ 0.03
VPS28-210ENST00000529182 KRT25Q7Z3Z0 450 aa15.21■□□□□ 0.03
VPS28-210ENST00000529182 SLC43A3Q8NBI5 491 aa15.21■□□□□ 0.03
VPS28-210ENST00000529182 GPR20Q99678 358 aa15.21■□□□□ 0.03
VPS28-210ENST00000529182 AGO4Q9HCK5 861 aaKnown RBP15.21■□□□□ 0.03
VPS28-210ENST00000529182 PRDM5Q9NQX1 630 aaPredicted RBP15.21■□□□□ 0.03
VPS28-210ENST00000529182 PDLIM7Q9NR12 457 aa15.21■□□□□ 0.03
VPS28-210ENST00000529182 FAM205CA6NFA0 338 aa15.2■□□□□ 0.02
VPS28-210ENST00000529182 KPNA6O60684 536 aa15.2■□□□□ 0.02
VPS28-210ENST00000529182 MMP1P03956 469 aa15.2■□□□□ 0.02
VPS28-210ENST00000529182 CIITAP33076 1130 aa15.2■□□□□ 0.02
VPS28-210ENST00000529182 KRT2P35908 639 aa15.2■□□□□ 0.02
VPS28-210ENST00000529182 HMGN5P82970 282 aaKnown RBP15.2■□□□□ 0.02
VPS28-210ENST00000529182 FAAP100Q0VG06 881 aa15.2■□□□□ 0.02
VPS28-210ENST00000529182 TRIM29Q14134 588 aa15.2■□□□□ 0.02
VPS28-210ENST00000529182 NONOQ15233 471 aaKnown RBP eCLIP15.2■□□□□ 0.02
VPS28-210ENST00000529182 PRR16Q569H4 304 aa15.2■□□□□ 0.02
VPS28-210ENST00000529182 FAM47CQ5HY64 1035 aa15.2■□□□□ 0.02
VPS28-210ENST00000529182 PIK3AP1Q6ZUJ8 805 aa15.2■□□□□ 0.02
VPS28-210ENST00000529182 NIPA1Q7RTP0 329 aa15.2■□□□□ 0.02
VPS28-210ENST00000529182 ANKRD33Q7Z3H0 272 aa15.2■□□□□ 0.02
VPS28-210ENST00000529182 FAM184AQ8NB25 1140 aa15.2■□□□□ 0.02
VPS28-210ENST00000529182 GIMAP8Q8ND71 665 aaPredicted RBP15.2■□□□□ 0.02
VPS28-210ENST00000529182 IL27Q8NEV9 243 aa15.2■□□□□ 0.02
VPS28-210ENST00000529182 LENG9Q96B70 501 aa15.2■□□□□ 0.02
VPS28-210ENST00000529182 SCN10AQ9Y5Y9 1956 aa15.19■□□□□ 0.02
VPS28-210ENST00000529182 CCDC194A0A1B0GVG4 234 aa15.19■□□□□ 0.02
VPS28-210ENST00000529182 TRIM43BA6NCK2 446 aa15.19■□□□□ 0.02
VPS28-210ENST00000529182 BTBD18B2RXH4 712 aa15.19■□□□□ 0.02
VPS28-210ENST00000529182 DDX39AO00148 427 aaKnown RBP15.19■□□□□ 0.02
VPS28-210ENST00000529182 PPFIA4O75335 1185 aa15.19■□□□□ 0.02
VPS28-210ENST00000529182 TDP2O95551 362 aa15.19■□□□□ 0.02
VPS28-210ENST00000529182 F2P00734 622 aa15.19■□□□□ 0.02
VPS28-210ENST00000529182 LGALS2P05162 132 aa15.19■□□□□ 0.02
VPS28-210ENST00000529182 CLTBP09497 229 aa15.19■□□□□ 0.02
VPS28-210ENST00000529182 PSEN2P49810 448 aa15.19■□□□□ 0.02
VPS28-210ENST00000529182 USP11P51784 963 aa15.19■□□□□ 0.02
VPS28-210ENST00000529182 UTP14CQ5TAP6 766 aaKnown RBP15.19■□□□□ 0.02
VPS28-210ENST00000529182 TRIM50Q86XT4 487 aa15.19■□□□□ 0.02
VPS28-210ENST00000529182 FAM126BQ8IXS8 530 aa15.19■□□□□ 0.02
VPS28-210ENST00000529182 DIS3L2Q8IYB7 885 aaKnown RBP15.19■□□□□ 0.02
VPS28-210ENST00000529182 TNFRSF25Q93038 417 aa15.19■□□□□ 0.02
VPS28-210ENST00000529182 TRIM43Q96BQ3 446 aaPredicted RBP15.19■□□□□ 0.02
VPS28-210ENST00000529182 C8orf76Q96K31 380 aa15.19■□□□□ 0.02
VPS28-210ENST00000529182 TOX2Q96NM4 488 aa15.19■□□□□ 0.02
VPS28-210ENST00000529182 ZNF577Q9BSK1 485 aa15.19■□□□□ 0.02
VPS28-210ENST00000529182 C16orf70Q9BSU1 422 aa15.19■□□□□ 0.02
VPS28-210ENST00000529182 TRPV6Q9H1D0 765 aa15.19■□□□□ 0.02
VPS28-210ENST00000529182 BRMS1Q9HCU9 246 aa15.19■□□□□ 0.02
VPS28-210ENST00000529182 JPH1Q9HDC5 661 aaPredicted RBP15.19■□□□□ 0.02
VPS28-210ENST00000529182 GSTTP1A0A1W2PQM5 241 aa15.18■□□□□ 0.02
VPS28-210ENST00000529182 DCDC2CA8MYV0 355 aa15.18■□□□□ 0.02
VPS28-210ENST00000529182 B4GALT4O60513 344 aa15.18■□□□□ 0.02
VPS28-210ENST00000529182 ITGB8P26012 769 aa15.18■□□□□ 0.02
VPS28-210ENST00000529182 SETQ01105 290 aaPredicted RBP15.18■□□□□ 0.02
VPS28-210ENST00000529182 MFSD10Q14728 455 aa15.18■□□□□ 0.02
VPS28-210ENST00000529182 KIAA0753Q2KHM9 967 aa15.18■□□□□ 0.02
VPS28-210ENST00000529182 LETM2Q2VYF4 491 aa15.18■□□□□ 0.02
VPS28-210ENST00000529182 GJA10Q969M2 543 aa15.18■□□□□ 0.02
VPS28-210ENST00000529182 SDF4Q9BRK5 362 aa15.18■□□□□ 0.02
VPS28-210ENST00000529182 TRMT13Q9NUP7 481 aaKnown RBP15.18■□□□□ 0.02
VPS28-210ENST00000529182 TMEM39AQ9NV64 488 aa15.18■□□□□ 0.02
VPS28-210ENST00000529182 SLC9A2Q9UBY0 812 aa15.18■□□□□ 0.02
VPS28-210ENST00000529182 NFASCO94856 1347 aa15.17■□□□□ 0.02
VPS28-210ENST00000529182 MROH7Q68CQ1 1323 aa15.17■□□□□ 0.02
VPS28-210ENST00000529182 HAS3O00219 553 aa15.17■□□□□ 0.02
VPS28-210ENST00000529182 IPO5O00410 1097 aaKnown RBP15.17■□□□□ 0.02
VPS28-210ENST00000529182 MSH4O15457 936 aa15.17■□□□□ 0.02
VPS28-210ENST00000529182 DHX15O43143 795 aaKnown RBP15.17■□□□□ 0.02
VPS28-210ENST00000529182 CD4P01730 458 aa15.17■□□□□ 0.02
VPS28-210ENST00000529182 TCF7P36402 384 aaPredicted RBP15.17■□□□□ 0.02
VPS28-210ENST00000529182 MDM2Q00987 491 aaPredicted RBP15.17■□□□□ 0.02
VPS28-210ENST00000529182 SEPT1Q8WYJ6 367 aa15.17■□□□□ 0.02
VPS28-210ENST00000529182 PRKAG2Q9UGJ0 569 aa15.17■□□□□ 0.02
VPS28-210ENST00000529182 CYP3A7-CYP3A51PA0A087WV96 503 aa15.16■□□□□ 0.02
VPS28-210ENST00000529182 H3BRB1 525 aa15.16■□□□□ 0.02
VPS28-210ENST00000529182 TLR3O15455 904 aaKnown RBP15.16■□□□□ 0.02
VPS28-210ENST00000529182 SLC37A4O43826 429 aa15.16■□□□□ 0.02
VPS28-210ENST00000529182 CCNE2O96020 404 aa15.16■□□□□ 0.02
VPS28-210ENST00000529182 CYP3A7P24462 503 aa15.16■□□□□ 0.02
VPS28-210ENST00000529182 GJB2P29033 226 aa15.16■□□□□ 0.02
VPS28-210ENST00000529182 MAGEA10P43363 369 aaPredicted RBP15.16■□□□□ 0.02
VPS28-210ENST00000529182 ACTR2P61160 394 aa15.16■□□□□ 0.02
VPS28-210ENST00000529182 Q4G0T1 1027 aa15.16■□□□□ 0.02
VPS28-210ENST00000529182 NFRKBQ6P4R8 1299 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms