RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 POLR2DO15514 142 aaKnown RBP9.67□□□□□ -0.86
LIMCH1-209ENST00000509277 CASP1P29466 404 aa9.67□□□□□ -0.86
LIMCH1-209ENST00000509277 C11orf57Q6ZUT1 292 aaPredicted RBP9.67□□□□□ -0.86
LIMCH1-209ENST00000509277 HOMEZQ8IX15 550 aa9.67□□□□□ -0.86
LIMCH1-209ENST00000509277 CAPNS2Q96L46 248 aa9.67□□□□□ -0.86
LIMCH1-209ENST00000509277 PDE11AQ9HCR9 933 aa9.67□□□□□ -0.86
LIMCH1-209ENST00000509277 A1CFQ9NQ94 594 aaKnown RBP9.67□□□□□ -0.86
LIMCH1-209ENST00000509277 SH3GLB2Q9NR46 395 aa9.67□□□□□ -0.86
LIMCH1-209ENST00000509277 COL20A1Q9P218 1284 aa9.67□□□□□ -0.86
LIMCH1-209ENST00000509277 ZNF536O15090 1300 aa9.67□□□□□ -0.86
LIMCH1-209ENST00000509277 NDUFA8P51970 172 aa9.67□□□□□ -0.86
LIMCH1-209ENST00000509277 BTNL9Q6UXG8 535 aa9.67□□□□□ -0.86
LIMCH1-209ENST00000509277 RASAL3Q86YV0 1011 aa9.67□□□□□ -0.86
LIMCH1-209ENST00000509277 ANKRD20A12PQ8NF67 263 aa9.67□□□□□ -0.86
LIMCH1-209ENST00000509277 SUGCTQ9HAC7 445 aa9.67□□□□□ -0.86
LIMCH1-209ENST00000509277 ZNF214Q9UL59 606 aaPredicted RBP9.67□□□□□ -0.86
LIMCH1-209ENST00000509277 MEIS1O00470 390 aa9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 CYP2B6P20813 491 aa9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 SYKP43405 635 aa9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 SLC39A14Q15043 492 aa9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 MAEAQ7L5Y9 396 aa9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 MCF2L2Q86YR7 1114 aa9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 MRPS27Q92552 414 aaKnown RBP9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 MMP19Q99542 508 aa9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 PLCD4Q9BRC7 762 aa9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 GINM1Q9NU53 330 aa9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 ADAM21Q9UKJ8 722 aa9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 SCN4AP35499 1836 aa9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 PES1O00541 588 aaKnown RBP9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 OPLAHO14841 1288 aa9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 MAP2K2P36507 400 aa9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 ERVK-9P63128 1117 aa9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 ERVK-24P63145 666 aa9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 TRAF1Q13077 416 aa9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 TMEM266Q2M3C6 531 aa9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 PROCA1Q8NCQ7 364 aaPredicted RBP9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 GPRC5AQ8NFJ5 357 aa9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 GIMAP7Q8NHV1 300 aa9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 GOLPH3LQ9H4A5 285 aa9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 EHMT1Q9H9B1 1298 aa9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 LZTFL1Q9NQ48 299 aa9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 RBPJLQ9UBG7 517 aa9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 OR52Z1P0C646 297 aa9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 PFKFB1P16118 471 aa9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 TXLNAP40222 546 aa9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 CEP57Q86XR8 500 aa9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 KIRREL3Q8IZU9 778 aa9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 CNNM3Q8NE01 707 aa9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 SYTL5Q8TDW5 730 aaPredicted RBP9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 SYMPKQ92797 1274 aaKnown RBP9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 CCDC43Q96MW1 224 aaKnown RBP9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 WDR11Q9BZH6 1224 aa9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 ATAD5Q96QE3 1844 aa9.66□□□□□ -0.86
LIMCH1-209ENST00000509277 SMARCA1P28370 1054 aa9.65□□□□□ -0.86
LIMCH1-209ENST00000509277 SETQ01105 290 aaPredicted RBP9.65□□□□□ -0.86
LIMCH1-209ENST00000509277 PACS2Q86VP3 889 aa9.65□□□□□ -0.86
LIMCH1-209ENST00000509277 PPP1R13LQ8WUF5 828 aa9.65□□□□□ -0.86
LIMCH1-209ENST00000509277 PCDHA12Q9UN75 941 aa9.65□□□□□ -0.86
LIMCH1-209ENST00000509277 CLGNO14967 610 aa9.65□□□□□ -0.86
LIMCH1-209ENST00000509277 FCER1AP12319 257 aa9.65□□□□□ -0.86
LIMCH1-209ENST00000509277 CNGA1P29973 690 aa9.65□□□□□ -0.86
LIMCH1-209ENST00000509277 FKBP1BP68106 108 aa9.65□□□□□ -0.86
LIMCH1-209ENST00000509277 PDE4DQ08499 809 aa9.65□□□□□ -0.86
LIMCH1-209ENST00000509277 FSTL1Q12841 308 aa9.65□□□□□ -0.86
LIMCH1-209ENST00000509277 GALNT17Q6IS24 598 aa9.65□□□□□ -0.86
LIMCH1-209ENST00000509277 MS4A4AQ96JQ5 239 aa9.65□□□□□ -0.86
LIMCH1-209ENST00000509277 PARK7Q99497 189 aaKnown RBP9.65□□□□□ -0.86
LIMCH1-209ENST00000509277 DESI2Q9BSY9 194 aa9.65□□□□□ -0.86
LIMCH1-209ENST00000509277 BLZF1Q9H2G9 400 aa9.65□□□□□ -0.86
LIMCH1-209ENST00000509277 POLR3EQ9NVU0 708 aa9.65□□□□□ -0.86
LIMCH1-209ENST00000509277 LRWD1Q9UFC0 647 aa9.65□□□□□ -0.86
LIMCH1-209ENST00000509277 FHOD1Q9Y613 1164 aa9.65□□□□□ -0.86
LIMCH1-209ENST00000509277 FAM86B1E9PN63 330 aa9.65□□□□□ -0.87
LIMCH1-209ENST00000509277 GAS7O60861 476 aa9.65□□□□□ -0.87
LIMCH1-209ENST00000509277 N4BP1O75113 896 aaKnown RBP9.65□□□□□ -0.87
LIMCH1-209ENST00000509277 YEATS4O95619 227 aa9.65□□□□□ -0.87
LIMCH1-209ENST00000509277 FAM86B2P0C5J1 330 aa9.65□□□□□ -0.87
LIMCH1-209ENST00000509277 GPAT2Q6NUI2 795 aa9.65□□□□□ -0.87
LIMCH1-209ENST00000509277 LBX2Q6XYB7 198 aa9.65□□□□□ -0.87
LIMCH1-209ENST00000509277 SNX29Q8TEQ0 813 aa9.65□□□□□ -0.87
LIMCH1-209ENST00000509277 ZNF577Q9BSK1 485 aa9.65□□□□□ -0.87
LIMCH1-209ENST00000509277 RCOR1Q9UKL0 485 aa9.65□□□□□ -0.87
LIMCH1-209ENST00000509277 FAN1Q9Y2M0 1017 aa9.65□□□□□ -0.87
LIMCH1-209ENST00000509277 EIF3CLB5ME19 914 aaKnown RBP9.64□□□□□ -0.87
LIMCH1-209ENST00000509277 TNPO2O14787 897 aaKnown RBP9.64□□□□□ -0.87
LIMCH1-209ENST00000509277 ARP10275 920 aa9.64□□□□□ -0.87
LIMCH1-209ENST00000509277 IDEP14735 1019 aa9.64□□□□□ -0.87
LIMCH1-209ENST00000509277 RDXP35241 583 aaKnown RBP9.64□□□□□ -0.87
LIMCH1-209ENST00000509277 CCNA1P78396 465 aa9.64□□□□□ -0.87
LIMCH1-209ENST00000509277 CACNB1Q02641 598 aaPredicted RBP9.64□□□□□ -0.87
LIMCH1-209ENST00000509277 GJC2Q5T442 439 aaPredicted RBP9.64□□□□□ -0.87
LIMCH1-209ENST00000509277 SRLQ86TD4 932 aa9.64□□□□□ -0.87
LIMCH1-209ENST00000509277 CLEC4DQ8WXI8 215 aa9.64□□□□□ -0.87
LIMCH1-209ENST00000509277 EIF3CQ99613 913 aaKnown RBP9.64□□□□□ -0.87
LIMCH1-209ENST00000509277 KCNH3Q9ULD8 1083 aa9.64□□□□□ -0.87
LIMCH1-209ENST00000509277 KCNH4Q9UQ05 1017 aa9.64□□□□□ -0.87
LIMCH1-209ENST00000509277 NID2Q14112 1375 aa9.64□□□□□ -0.87
LIMCH1-209ENST00000509277 RBAK-RBAKDNI3L0D1 243 aa9.64□□□□□ -0.87
LIMCH1-209ENST00000509277 hCG_1984214I3L0E3 225 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms