RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 CETN3O15182 167 aa7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 CCND1P24385 295 aa7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 EPHB2P29323 1055 aa7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 GSTT1P30711 240 aa7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 ALDH3A1P30838 453 aa7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 MPP3Q13368 585 aa7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 MYBPC3Q14896 1274 aa7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 DAAM2Q86T65 1068 aa7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 HOOK3Q86VS8 718 aa7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 SYNE4Q8N205 404 aa7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 GLIS3Q8NEA6 775 aa7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 SPATA20Q8TB22 786 aa7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 SPOCK2Q92563 424 aa7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 CNOT6LQ96LI5 555 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 FAM210AQ96ND0 272 aa7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 ZNF317Q96PQ6 595 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 PLEKHG4BQ96PX9 1271 aa7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 HELLSQ9NRZ9 838 aa7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 TBC1D7Q9P0N9 293 aa7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 IQSEC3Q9UPP2 1182 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 SETD1AO15047 1707 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 MINDY4BA8MYZ0 360 aa7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 MCL1Q07820 350 aa7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 STK4Q13043 487 aa7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 SLC29A2Q14542 456 aa7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 LONRF1Q17RB8 773 aa7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 ERMARDQ5T6L9 678 aa7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 ACBD5Q5T8D3 534 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 RFWD3Q6PCD5 774 aa7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 C14orf80Q86SX3 495 aa7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 ZNF507Q8TCN5 953 aa7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 FERMT2Q96AC1 680 aa7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 NMD3Q96D46 503 aaKnown RBP7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 NOX5Q96PH1 765 aa7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 GSDMAQ96QA5 445 aa7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 SEMA4AQ9H3S1 761 aa7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 BSDC1Q9NW68 430 aaPredicted RBP7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 RWDD2AQ9UIY3 292 aa7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 SERPINA10Q9UK55 444 aa7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 PCDHGA4Q9Y5G9 962 aa7.92□□□□□ -1.14
LIMCH1-207ENST00000508466 LMTK2Q8IWU2 1503 aa7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 MAGEA13PA6NCF6 341 aa7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 LRRC10BA6NIK2 292 aa7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 SH2B2O14492 632 aaPredicted RBP7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 GCLCP48506 637 aaPredicted RBP7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 GNAQP50148 359 aa7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 COPS2P61201 443 aa7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 TMED1Q13445 227 aa7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 MTMR2Q13614 643 aa7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 UBE4AQ14139 1066 aa7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 CCDC6Q16204 474 aa7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 MTHFD1LQ6UB35 978 aa7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 DYMQ7RTS9 669 aa7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 TRIML1Q8N9V2 468 aa7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 MIGA1Q8NAN2 632 aa7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 SH3RF3Q8TEJ3 882 aaPredicted RBP7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 CRAMP1Q96RY5 1269 aa7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 PAGR1Q9BTK6 254 aa7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 FAM129AQ9BZQ8 928 aa7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 NAPBQ9H115 298 aa7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 ITIH6Q6UXX5 1313 aa7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 ATXN2Q99700 1313 aaKnown RBP7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 ANO9A1A5B4 782 aa7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 PIAS1O75925 651 aa7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 GNA14O95837 355 aa7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 HSPA9P38646 679 aaKnown RBP7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 RFX5P48382 616 aaPredicted RBP7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 EVX2Q03828 476 aa7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 KANK3Q6NY19 840 aa7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 VSIG1Q86XK7 387 aa7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 LMNTD2Q8IXW0 634 aa7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 CYP4X1Q8N118 509 aa7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 IGDCC4Q8TDY8 1250 aa7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 KIFAP3Q92845 792 aa7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 PWWP2AQ96N64 755 aa7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 LY9Q9HBG7 655 aa7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 KCNMB3Q9NPA1 279 aa7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 DDX18Q9NVP1 670 aaKnown RBP7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 ANKIB1Q9P2G1 1089 aa7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 PTPN22Q9Y2R2 807 aa7.91□□□□□ -1.14
LIMCH1-207ENST00000508466 MYH6P13533 1939 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 CYP2D7A0A087X1C5 515 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 FAM237AA0A1B0GTK4 181 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 RGS16O15492 202 aaPredicted RBP7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 CREB3O43889 395 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 ATP9AO75110 1047 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 PLEKHA8P1O95397 391 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 CYP1A1P04798 512 aaPredicted RBP7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 TATP17735 454 aaPredicted RBP7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 KCNA3P22001 575 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 FECHP22830 423 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 CACNA2D1P54289 1103 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 KLC1Q07866 573 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 RTN1Q16799 776 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 RILPL1Q5EBL4 403 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 HP1BP3Q5SSJ5 553 aaPredicted RBP7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 FAM182AQ5T1J6 154 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 PRUNE1Q86TP1 453 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 TRIM22Q8IYM9 498 aa7.9□□□□□ -1.14
LIMCH1-207ENST00000508466 RNF10Q8N5U6 811 aaKnown RBP7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms