RNA–Protein interactions for RNA: ENST00000464493.5

SQSTM1-205, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-205ENST00000464493 NOP56O00567 594 aaKnown RBP16.5■□□□□ 0.23
SQSTM1-205ENST00000464493 RTP1P59025 263 aa16.5■□□□□ 0.23
SQSTM1-205ENST00000464493 GUCY1B3Q02153 619 aa16.5■□□□□ 0.23
SQSTM1-205ENST00000464493 NR5A1Q13285 461 aa16.5■□□□□ 0.23
SQSTM1-205ENST00000464493 SAFBQ15424 915 aaKnown RBP eCLIP16.5■□□□□ 0.23
SQSTM1-205ENST00000464493 INF2Q27J81 1249 aa16.5■□□□□ 0.23
SQSTM1-205ENST00000464493 PIK3AP1Q6ZUJ8 805 aa16.5■□□□□ 0.23
SQSTM1-205ENST00000464493 DIS3L2Q8IYB7 885 aaKnown RBP16.5■□□□□ 0.23
SQSTM1-205ENST00000464493 ATP11BQ9Y2G3 1177 aa16.5■□□□□ 0.23
SQSTM1-205ENST00000464493 KIF3AQ9Y496 699 aa16.5■□□□□ 0.23
SQSTM1-205ENST00000464493 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.5■□□□□ 0.23
SQSTM1-205ENST00000464493 NR2E3Q9Y5X4 410 aa16.5■□□□□ 0.23
SQSTM1-205ENST00000464493 ARVCFO00192 962 aa16.49■□□□□ 0.23
SQSTM1-205ENST00000464493 HOXD8P13378 290 aaPredicted RBP16.49■□□□□ 0.23
SQSTM1-205ENST00000464493 CDK7P50613 346 aa16.49■□□□□ 0.23
SQSTM1-205ENST00000464493 PSMC6P62333 389 aa16.49■□□□□ 0.23
SQSTM1-205ENST00000464493 SETQ01105 290 aaPredicted RBP16.49■□□□□ 0.23
SQSTM1-205ENST00000464493 ITGA7Q13683 1181 aa16.49■□□□□ 0.23
SQSTM1-205ENST00000464493 TRIM60Q495X7 471 aa16.49■□□□□ 0.23
SQSTM1-205ENST00000464493 PRR16Q569H4 304 aa16.49■□□□□ 0.23
SQSTM1-205ENST00000464493 C7orf61Q8IZ16 206 aa16.49■□□□□ 0.23
SQSTM1-205ENST00000464493 FBXO18Q8NFZ0 1043 aa16.49■□□□□ 0.23
SQSTM1-205ENST00000464493 TNFRSF25Q93038 417 aa16.49■□□□□ 0.23
SQSTM1-205ENST00000464493 GPR20Q99678 358 aa16.49■□□□□ 0.23
SQSTM1-205ENST00000464493 SEZ6LQ9BYH1 1024 aa16.49■□□□□ 0.23
SQSTM1-205ENST00000464493 SMC3Q9UQE7 1217 aa16.49■□□□□ 0.23
SQSTM1-205ENST00000464493 GRIN2DO15399 1336 aa16.48■□□□□ 0.23
SQSTM1-205ENST00000464493 NFASCO94856 1347 aa16.48■□□□□ 0.23
SQSTM1-205ENST00000464493 CYP3A7-CYP3A51PA0A087WV96 503 aa16.48■□□□□ 0.23
SQSTM1-205ENST00000464493 CYP3A7P24462 503 aa16.48■□□□□ 0.23
SQSTM1-205ENST00000464493 GJB2P29033 226 aa16.48■□□□□ 0.23
SQSTM1-205ENST00000464493 SP4Q02446 784 aa16.48■□□□□ 0.23
SQSTM1-205ENST00000464493 TLE2Q04725 743 aa16.48■□□□□ 0.23
SQSTM1-205ENST00000464493 ITGB3BPQ13352 177 aaPredicted RBP16.48■□□□□ 0.23
SQSTM1-205ENST00000464493 CUL4AQ13619 759 aa16.48■□□□□ 0.23
SQSTM1-205ENST00000464493 EARS2Q5JPH6 523 aaKnown RBP16.48■□□□□ 0.23
SQSTM1-205ENST00000464493 ANKRD33Q7Z3H0 272 aa16.48■□□□□ 0.23
SQSTM1-205ENST00000464493 SLC43A3Q8NBI5 491 aa16.48■□□□□ 0.23
SQSTM1-205ENST00000464493 SNX21Q969T3 373 aa16.48■□□□□ 0.23
SQSTM1-205ENST00000464493 TOX2Q96NM4 488 aa16.48■□□□□ 0.23
SQSTM1-205ENST00000464493 SDF4Q9BRK5 362 aa16.48■□□□□ 0.23
SQSTM1-205ENST00000464493 ZNF577Q9BSK1 485 aa16.48■□□□□ 0.23
SQSTM1-205ENST00000464493 JPH1Q9HDC5 661 aaPredicted RBP16.48■□□□□ 0.23
SQSTM1-205ENST00000464493 MROH7Q68CQ1 1323 aa16.47■□□□□ 0.23
SQSTM1-205ENST00000464493 K7ELQ4 463 aaPredicted RBP16.47■□□□□ 0.23
SQSTM1-205ENST00000464493 IPO5O00410 1097 aaKnown RBP16.47■□□□□ 0.23
SQSTM1-205ENST00000464493 PQBP1O60828 265 aaKnown RBP16.47■□□□□ 0.23
SQSTM1-205ENST00000464493 LETM2Q2VYF4 491 aa16.47■□□□□ 0.23
SQSTM1-205ENST00000464493 NBPF20Q3BBV1 942 aa16.47■□□□□ 0.23
SQSTM1-205ENST00000464493 Q4G0T1 1027 aa16.47■□□□□ 0.23
SQSTM1-205ENST00000464493 MOXD1Q6UVY6 613 aa16.47■□□□□ 0.23
SQSTM1-205ENST00000464493 NEK8Q86SG6 692 aa16.47■□□□□ 0.23
SQSTM1-205ENST00000464493 SEPT1Q8WYJ6 367 aa16.47■□□□□ 0.23
SQSTM1-205ENST00000464493 KAT2BQ92831 832 aa16.47■□□□□ 0.23
SQSTM1-205ENST00000464493 LENG9Q96B70 501 aa16.47■□□□□ 0.23
SQSTM1-205ENST00000464493 SLC9A2Q9UBY0 812 aa16.47■□□□□ 0.23
SQSTM1-205ENST00000464493 TELO2Q9Y4R8 837 aa16.47■□□□□ 0.23
SQSTM1-205ENST00000464493 SCN10AQ9Y5Y9 1956 aa16.46■□□□□ 0.23
SQSTM1-205ENST00000464493 DCDC2CA8MYV0 355 aa16.46■□□□□ 0.23
SQSTM1-205ENST00000464493 TDP2O95551 362 aa16.46■□□□□ 0.23
SQSTM1-205ENST00000464493 ZNF286BP0CG31 522 aa16.46■□□□□ 0.23
SQSTM1-205ENST00000464493 CHMP4BP1P59074 171 aa16.46■□□□□ 0.23
SQSTM1-205ENST00000464493 PPP4R3AQ6IN85 833 aa16.46■□□□□ 0.23
SQSTM1-205ENST00000464493 MBOAT7Q96N66 472 aa16.46■□□□□ 0.23
SQSTM1-205ENST00000464493 UIMC1Q96RL1 719 aa16.46■□□□□ 0.23
SQSTM1-205ENST00000464493 NAP1L4Q99733 375 aaKnown RBP16.46■□□□□ 0.23
SQSTM1-205ENST00000464493 C16orf70Q9BSU1 422 aa16.46■□□□□ 0.23
SQSTM1-205ENST00000464493 KATNAL1Q9BW62 490 aa16.46■□□□□ 0.23
SQSTM1-205ENST00000464493 FOXP1Q9H334 677 aaPredicted RBP16.46■□□□□ 0.23
SQSTM1-205ENST00000464493 TBC1D22BQ9NU19 505 aa16.46■□□□□ 0.23
SQSTM1-205ENST00000464493 CEP290O15078 2479 aa16.45■□□□□ 0.22
SQSTM1-205ENST00000464493 GSTTP1A0A1W2PQM5 241 aa16.45■□□□□ 0.22
SQSTM1-205ENST00000464493 FAM205CA6NFA0 338 aa16.45■□□□□ 0.22
SQSTM1-205ENST00000464493 MSH4O15457 936 aa16.45■□□□□ 0.22
SQSTM1-205ENST00000464493 DHX15O43143 795 aaKnown RBP16.45■□□□□ 0.22
SQSTM1-205ENST00000464493 CCNT1O60563 726 aaKnown RBP16.45■□□□□ 0.22
SQSTM1-205ENST00000464493 F2P00734 622 aa16.45■□□□□ 0.22
SQSTM1-205ENST00000464493 LGALS2P05162 132 aa16.45■□□□□ 0.22
SQSTM1-205ENST00000464493 TCF7P36402 384 aaPredicted RBP16.45■□□□□ 0.22
SQSTM1-205ENST00000464493 PSEN2P49810 448 aa16.45■□□□□ 0.22
SQSTM1-205ENST00000464493 GNL2Q13823 731 aaKnown RBP16.45■□□□□ 0.22
SQSTM1-205ENST00000464493 NFRKBQ6P4R8 1299 aa16.45■□□□□ 0.22
SQSTM1-205ENST00000464493 DDX25Q9UHL0 483 aaKnown RBP16.45■□□□□ 0.22
SQSTM1-205ENST00000464493 H0YGN5 161 aa16.44■□□□□ 0.22
SQSTM1-205ENST00000464493 H3BRB1 525 aa16.44■□□□□ 0.22
SQSTM1-205ENST00000464493 DDX39AO00148 427 aaKnown RBP16.44■□□□□ 0.22
SQSTM1-205ENST00000464493 HAS3O00219 553 aa16.44■□□□□ 0.22
SQSTM1-205ENST00000464493 TLR3O15455 904 aaKnown RBP16.44■□□□□ 0.22
SQSTM1-205ENST00000464493 CLTBP09497 229 aa16.44■□□□□ 0.22
SQSTM1-205ENST00000464493 GCFC2P16383 781 aaKnown RBP16.44■□□□□ 0.22
SQSTM1-205ENST00000464493 ACTR2P61160 394 aa16.44■□□□□ 0.22
SQSTM1-205ENST00000464493 PTPN11Q06124 597 aaPredicted RBP16.44■□□□□ 0.22
SQSTM1-205ENST00000464493 FAAP100Q0VG06 881 aa16.44■□□□□ 0.22
SQSTM1-205ENST00000464493 MFSD10Q14728 455 aa16.44■□□□□ 0.22
SQSTM1-205ENST00000464493 KIAA0753Q2KHM9 967 aa16.44■□□□□ 0.22
SQSTM1-205ENST00000464493 FAM47CQ5HY64 1035 aa16.44■□□□□ 0.22
SQSTM1-205ENST00000464493 UTP14CQ5TAP6 766 aaKnown RBP16.44■□□□□ 0.22
SQSTM1-205ENST00000464493 HSCBQ8IWL3 235 aa16.44■□□□□ 0.22
SQSTM1-205ENST00000464493 FAM126BQ8IXS8 530 aa16.44■□□□□ 0.22
SQSTM1-205ENST00000464493 PPP1R13LQ8WUF5 828 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms