RNA–Protein interactions for RNA: ENST00000434472.6

CD44-210, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-210ENST00000434472 ARHGAP20Q9P2F6 1191 aa11.53□□□□□ -0.56
CD44-210ENST00000434472 TSKSQ9UJT2 592 aa11.53□□□□□ -0.56
CD44-210ENST00000434472 COL2A1P02458 1487 aaPredicted RBP11.52□□□□□ -0.56
CD44-210ENST00000434472 FRMD3A2A2Y4 597 aa11.52□□□□□ -0.57
CD44-210ENST00000434472 RCCD1A6NED2 376 aa11.52□□□□□ -0.57
CD44-210ENST00000434472 LRRC53A6NM62 1247 aa11.52□□□□□ -0.57
CD44-210ENST00000434472 USP17L15C9J2P7 530 aa11.52□□□□□ -0.57
CD44-210ENST00000434472 USP17L13C9JLJ4 530 aa11.52□□□□□ -0.57
CD44-210ENST00000434472 USP17L11C9JVI0 530 aa11.52□□□□□ -0.57
CD44-210ENST00000434472 USP17L18D6R9N7 530 aa11.52□□□□□ -0.57
CD44-210ENST00000434472 USP17L22D6RA61 530 aa11.52□□□□□ -0.57
CD44-210ENST00000434472 USP17L17D6RBQ6 530 aa11.52□□□□□ -0.57
CD44-210ENST00000434472 USP17L19D6RCP7 530 aa11.52□□□□□ -0.57
CD44-210ENST00000434472 USP17L20D6RJB6 530 aa11.52□□□□□ -0.57
CD44-210ENST00000434472 E9PMD0 336 aa11.52□□□□□ -0.57
CD44-210ENST00000434472 ENC1O14682 589 aa11.52□□□□□ -0.57
CD44-210ENST00000434472 PLSCR1O15162 318 aa11.52□□□□□ -0.57
CD44-210ENST00000434472 CETN3O15182 167 aa11.52□□□□□ -0.57
CD44-210ENST00000434472 SERPING1P05155 500 aa11.52□□□□□ -0.57
CD44-210ENST00000434472 TCP1P17987 556 aaKnown RBP11.52□□□□□ -0.57
CD44-210ENST00000434472 CYP11B2P19099 503 aa11.52□□□□□ -0.57
CD44-210ENST00000434472 MAGEA1P43355 309 aa11.52□□□□□ -0.57
CD44-210ENST00000434472 RBM5P52756 815 aaKnown RBP eCLIP11.52□□□□□ -0.57
CD44-210ENST00000434472 ARHGAP4P98171 946 aa11.52□□□□□ -0.57
CD44-210ENST00000434472 USP17L24Q0WX57 530 aa11.52□□□□□ -0.57
CD44-210ENST00000434472 ABCB5Q2M3G0 1257 aa11.52□□□□□ -0.57
CD44-210ENST00000434472 SLC9C1Q4G0N8 1177 aa11.52□□□□□ -0.57
CD44-210ENST00000434472 HERC4Q5GLZ8 1057 aaPredicted RBP11.52□□□□□ -0.57
CD44-210ENST00000434472 DACT2Q5SW24 774 aa11.52□□□□□ -0.57
CD44-210ENST00000434472 SYDE2Q5VT97 1194 aa11.52□□□□□ -0.57
CD44-210ENST00000434472 SFMBT2Q5VUG0 894 aa11.52□□□□□ -0.57
CD44-210ENST00000434472 USP17L6PQ6QN14 398 aa11.52□□□□□ -0.57
CD44-210ENST00000434472 ZNF572Q7Z3I7 529 aaPredicted RBP11.52□□□□□ -0.57
CD44-210ENST00000434472 RNF10Q8N5U6 811 aaKnown RBP11.52□□□□□ -0.57
CD44-210ENST00000434472 NOA1Q8NC60 698 aaKnown RBP11.52□□□□□ -0.57
CD44-210ENST00000434472 ZNF622Q969S3 477 aaKnown RBP eCLIP11.52□□□□□ -0.57
CD44-210ENST00000434472 MMS19Q96T76 1030 aa11.52□□□□□ -0.57
CD44-210ENST00000434472 EMILIN3Q9NT22 766 aa11.52□□□□□ -0.57
CD44-210ENST00000434472 HDAC6Q9UBN7 1215 aa11.52□□□□□ -0.57
CD44-210ENST00000434472 FAM198AQ9UFP1 575 aa11.52□□□□□ -0.57
CD44-210ENST00000434472 DNM3Q9UQ16 869 aa11.52□□□□□ -0.57
CD44-210ENST00000434472 PCDHA2Q9Y5H9 948 aa11.52□□□□□ -0.57
CD44-210ENST00000434472 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.52□□□□□ -0.57
CD44-210ENST00000434472 MACROD2A1Z1Q3 448 aa11.51□□□□□ -0.57
CD44-210ENST00000434472 DDTLA6NHG4 134 aaPredicted RBP11.51□□□□□ -0.57
CD44-210ENST00000434472 SPDYE3A6NKU9 549 aa11.51□□□□□ -0.57
CD44-210ENST00000434472 F5H6K3 240 aa11.51□□□□□ -0.57
CD44-210ENST00000434472 RBAK-RBAKDNI3L0D1 243 aa11.51□□□□□ -0.57
CD44-210ENST00000434472 MEIS2O14770 477 aa11.51□□□□□ -0.57
CD44-210ENST00000434472 ZNF263O14978 683 aa11.51□□□□□ -0.57
CD44-210ENST00000434472 RAD21O60216 631 aa11.51□□□□□ -0.57
CD44-210ENST00000434472 MMP10P09238 476 aa11.51□□□□□ -0.57
CD44-210ENST00000434472 CIITAP33076 1130 aa11.51□□□□□ -0.57
CD44-210ENST00000434472 SREBF1P36956 1147 aa11.51□□□□□ -0.57
CD44-210ENST00000434472 SLC12A3P55017 1021 aa11.51□□□□□ -0.57
CD44-210ENST00000434472 CYP27A1Q02318 531 aa11.51□□□□□ -0.57
CD44-210ENST00000434472 KLRC3Q07444 240 aa11.51□□□□□ -0.57
CD44-210ENST00000434472 HSP90B2PQ58FF3 399 aa11.51□□□□□ -0.57
CD44-210ENST00000434472 RBM26Q5T8P6 1007 aaKnown RBP11.51□□□□□ -0.57
CD44-210ENST00000434472 BTNL9Q6UXG8 535 aa11.51□□□□□ -0.57
CD44-210ENST00000434472 TRIM59Q8IWR1 403 aa11.51□□□□□ -0.57
CD44-210ENST00000434472 ZFPM1Q8IX07 1006 aa11.51□□□□□ -0.57
CD44-210ENST00000434472 MMGT1Q8N4V1 131 aa11.51□□□□□ -0.57
CD44-210ENST00000434472 CRYGNQ8WXF5 182 aa11.51□□□□□ -0.57
CD44-210ENST00000434472 EXOC4Q96A65 974 aa11.51□□□□□ -0.57
CD44-210ENST00000434472 DBNDD1Q9H9R9 158 aa11.51□□□□□ -0.57
CD44-210ENST00000434472 JADE2Q9NQC1 790 aa11.51□□□□□ -0.57
CD44-210ENST00000434472 SNX12Q9UMY4 172 aa11.51□□□□□ -0.57
CD44-210ENST00000434472 HYOU1Q9Y4L1 999 aa11.51□□□□□ -0.57
CD44-210ENST00000434472 MYH7BA7E2Y1 1941 aa11.51□□□□□ -0.57
CD44-210ENST00000434472 POTEB3A0JP26 581 aa11.5□□□□□ -0.57
CD44-210ENST00000434472 POTECB2RU33 542 aa11.5□□□□□ -0.57
CD44-210ENST00000434472 H0YIN7 160 aa11.5□□□□□ -0.57
CD44-210ENST00000434472 EPHB6O15197 1021 aa11.5□□□□□ -0.57
CD44-210ENST00000434472 CALUO43852 315 aaPredicted RBP11.5□□□□□ -0.57
CD44-210ENST00000434472 ECE2O60344 883 aa11.5□□□□□ -0.57
CD44-210ENST00000434472 MED24O75448 989 aa11.5□□□□□ -0.57
CD44-210ENST00000434472 CYP3A4P08684 503 aa11.5□□□□□ -0.57
CD44-210ENST00000434472 BMP3P12645 472 aa11.5□□□□□ -0.57
CD44-210ENST00000434472 RPA1P27694 616 aa11.5□□□□□ -0.57
CD44-210ENST00000434472 EPS15P42566 896 aa11.5□□□□□ -0.57
CD44-210ENST00000434472 KCNMA1Q12791 1236 aa11.5□□□□□ -0.57
CD44-210ENST00000434472 TCP10Q12799 353 aa11.5□□□□□ -0.57
CD44-210ENST00000434472 CASP8Q14790 479 aa11.5□□□□□ -0.57
CD44-210ENST00000434472 ASTE1Q2TB18 679 aaPredicted RBP11.5□□□□□ -0.57
CD44-210ENST00000434472 POTEBQ6S5H4 581 aa11.5□□□□□ -0.57
CD44-210ENST00000434472 FRMD5Q7Z6J6 570 aa11.5□□□□□ -0.57
CD44-210ENST00000434472 KIAA0825Q8IV33 1275 aa11.5□□□□□ -0.57
CD44-210ENST00000434472 SYT2Q8N9I0 419 aaPredicted RBP11.5□□□□□ -0.57
CD44-210ENST00000434472 SUPT20HQ8NEM7 779 aa11.5□□□□□ -0.57
CD44-210ENST00000434472 ETNPPLQ8TBG4 499 aa11.5□□□□□ -0.57
CD44-210ENST00000434472 LSM14BQ9BX40 385 aaKnown RBP11.5□□□□□ -0.57
CD44-210ENST00000434472 KCTD10Q9H3F6 313 aa11.5□□□□□ -0.57
CD44-210ENST00000434472 MED4Q9NPJ6 270 aa11.5□□□□□ -0.57
CD44-210ENST00000434472 CALCOCO1Q9P1Z2 691 aa11.5□□□□□ -0.57
CD44-210ENST00000434472 RNF14Q9UBS8 474 aa11.5□□□□□ -0.57
CD44-210ENST00000434472 ADAMTSL1Q8N6G6 1762 aa11.5□□□□□ -0.57
CD44-210ENST00000434472 ATRNL1Q5VV63 1379 aa11.5□□□□□ -0.57
CD44-210ENST00000434472 PLEKP08567 350 aaPredicted RBP11.49□□□□□ -0.57
CD44-210ENST00000434472 IKQ13123 557 aaPredicted RBP11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms