RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 ACTN1P12814 892 aa15.75■□□□□ 0.11
SDC1-201ENST00000254351 PRLRP16471 622 aa15.75■□□□□ 0.11
SDC1-201ENST00000254351 GNAT2P19087 354 aa15.75■□□□□ 0.11
SDC1-201ENST00000254351 LRRC14Q15048 493 aa15.75■□□□□ 0.11
SDC1-201ENST00000254351 GLE1Q53GS7 698 aaKnown RBP15.75■□□□□ 0.11
SDC1-201ENST00000254351 SFMBT2Q5VUG0 894 aa15.75■□□□□ 0.11
SDC1-201ENST00000254351 USP38Q8NB14 1042 aa15.75■□□□□ 0.11
SDC1-201ENST00000254351 WHAMMQ8TF30 809 aa15.75■□□□□ 0.11
SDC1-201ENST00000254351 BAP1Q92560 729 aa15.75■□□□□ 0.11
SDC1-201ENST00000254351 RBM28Q9NW13 759 aaKnown RBP15.75■□□□□ 0.11
SDC1-201ENST00000254351 SLC12A6Q9UHW9 1150 aa15.75■□□□□ 0.11
SDC1-201ENST00000254351 KLHL30Q0D2K2 578 aa15.75■□□□□ 0.11
SDC1-201ENST00000254351 PFKFB3Q16875 520 aaPredicted RBP15.75■□□□□ 0.11
SDC1-201ENST00000254351 RSRC1Q96IZ7 334 aaKnown RBP15.75■□□□□ 0.11
SDC1-201ENST00000254351 GRID2IPA4D2P6 1211 aa15.74■□□□□ 0.11
SDC1-201ENST00000254351 CAND2O75155 1236 aa15.74■□□□□ 0.11
SDC1-201ENST00000254351 SHBGP04278 402 aa15.74■□□□□ 0.11
SDC1-201ENST00000254351 FAM83BQ5T0W9 1011 aa15.74■□□□□ 0.11
SDC1-201ENST00000254351 UBAP2Q5T6F2 1119 aaKnown RBP15.74■□□□□ 0.11
SDC1-201ENST00000254351 PPP4R3AQ6IN85 833 aa15.74■□□□□ 0.11
SDC1-201ENST00000254351 PDXDC1Q6P996 788 aa15.74■□□□□ 0.11
SDC1-201ENST00000254351 ZNF662Q6ZS27 426 aa15.74■□□□□ 0.11
SDC1-201ENST00000254351 PYM1Q9BRP8 204 aaKnown RBP15.74■□□□□ 0.11
SDC1-201ENST00000254351 ACTR5Q9H9F9 607 aaPredicted RBP15.74■□□□□ 0.11
SDC1-201ENST00000254351 PANK4Q9NVE7 773 aa15.74■□□□□ 0.11
SDC1-201ENST00000254351 PCDH11XQ9BZA7 1347 aa15.74■□□□□ 0.11
SDC1-201ENST00000254351 PCDH11YQ9BZA8 1340 aa15.74■□□□□ 0.11
SDC1-201ENST00000254351 DIAPH2O60879 1101 aa15.74■□□□□ 0.11
SDC1-201ENST00000254351 KIF4AO95239 1232 aa15.74■□□□□ 0.11
SDC1-201ENST00000254351 ANP32DO95626 131 aa15.74■□□□□ 0.11
SDC1-201ENST00000254351 KCNB1Q14721 858 aa15.74■□□□□ 0.11
SDC1-201ENST00000254351 HGSNATQ68CP4 663 aa15.74■□□□□ 0.11
SDC1-201ENST00000254351 CCDC63Q8NA47 563 aa15.74■□□□□ 0.11
SDC1-201ENST00000254351 PCDHA6Q9UN73 950 aa15.74■□□□□ 0.11
SDC1-201ENST00000254351 PCDHA8Q9Y5H6 950 aa15.74■□□□□ 0.11
SDC1-201ENST00000254351 FOXO6A8MYZ6 492 aa15.74■□□□□ 0.11
SDC1-201ENST00000254351 EPS15P42566 896 aa15.74■□□□□ 0.11
SDC1-201ENST00000254351 KCNJ2P63252 427 aa15.74■□□□□ 0.11
SDC1-201ENST00000254351 KCNMA1Q12791 1236 aa15.74■□□□□ 0.11
SDC1-201ENST00000254351 TRIM68Q6AZZ1 485 aa15.74■□□□□ 0.11
SDC1-201ENST00000254351 SPICE1Q8N0Z3 855 aa15.74■□□□□ 0.11
SDC1-201ENST00000254351 DYNLL2Q96FJ2 89 aa15.74■□□□□ 0.11
SDC1-201ENST00000254351 CDK5RAP3Q96JB5 506 aa15.74■□□□□ 0.11
SDC1-201ENST00000254351 LBHD1Q9BQE6 289 aaPredicted RBP15.74■□□□□ 0.11
SDC1-201ENST00000254351 YIPF3Q9GZM5 350 aa15.74■□□□□ 0.11
SDC1-201ENST00000254351 BCL9LQ86UU0 1499 aa15.73■□□□□ 0.11
SDC1-201ENST00000254351 USP17L3A6NCW0 530 aa15.73■□□□□ 0.11
SDC1-201ENST00000254351 USP17L4A6NCW7 530 aa15.73■□□□□ 0.11
SDC1-201ENST00000254351 POTEMA6NI47 508 aa15.73■□□□□ 0.11
SDC1-201ENST00000254351 TRIM37O94972 964 aa15.73■□□□□ 0.11
SDC1-201ENST00000254351 ECHS1P30084 290 aa15.73■□□□□ 0.11
SDC1-201ENST00000254351 ITIH3Q06033 890 aa15.73■□□□□ 0.11
SDC1-201ENST00000254351 GIGYF2Q6Y7W6 1299 aaKnown RBP15.73■□□□□ 0.11
SDC1-201ENST00000254351 OTUD6AQ7L8S5 288 aa15.73■□□□□ 0.11
SDC1-201ENST00000254351 USP17L1Q7RTZ2 530 aa15.73■□□□□ 0.11
SDC1-201ENST00000254351 TMOD3Q9NYL9 352 aa15.73■□□□□ 0.11
SDC1-201ENST00000254351 BIN2Q9UBW5 565 aaPredicted RBP15.73■□□□□ 0.11
SDC1-201ENST00000254351 FBXO3Q9UK99 471 aa15.73■□□□□ 0.11
SDC1-201ENST00000254351 PCDHA4Q9UN74 947 aa15.73■□□□□ 0.11
SDC1-201ENST00000254351 DISP2A7MBM2 1401 aa15.73■□□□□ 0.11
SDC1-201ENST00000254351 MYMKA6NI61 221 aa15.73■□□□□ 0.11
SDC1-201ENST00000254351 F8W031 263 aaPredicted RBP15.73■□□□□ 0.11
SDC1-201ENST00000254351 CHN1P15882 459 aa15.73■□□□□ 0.11
SDC1-201ENST00000254351 HSPA9P38646 679 aaKnown RBP15.73■□□□□ 0.11
SDC1-201ENST00000254351 MAN2A1Q16706 1144 aa15.73■□□□□ 0.11
SDC1-201ENST00000254351 ARL6IP4Q66PJ3 421 aaKnown RBP15.73■□□□□ 0.11
SDC1-201ENST00000254351 DAAM2Q86T65 1068 aa15.73■□□□□ 0.11
SDC1-201ENST00000254351 INPP4AQ96PE3 977 aaPredicted RBP15.73■□□□□ 0.11
SDC1-201ENST00000254351 PRMT1Q99873 361 aaKnown RBP15.73■□□□□ 0.11
SDC1-201ENST00000254351 NR2E1Q9Y466 385 aa15.73■□□□□ 0.11
SDC1-201ENST00000254351 MYH2Q9UKX2 1941 aa15.73■□□□□ 0.11
SDC1-201ENST00000254351 MMEP08473 750 aa15.72■□□□□ 0.11
SDC1-201ENST00000254351 CUL5Q93034 780 aa15.72■□□□□ 0.11
SDC1-201ENST00000254351 ZBTB10Q96DT7 871 aa15.72■□□□□ 0.11
SDC1-201ENST00000254351 ZBTB1Q9Y2K1 713 aa15.72■□□□□ 0.11
SDC1-201ENST00000254351 SCN11AQ9UI33 1791 aa15.72■□□□□ 0.11
SDC1-201ENST00000254351 LRP6O75581 1613 aa15.72■□□□□ 0.11
SDC1-201ENST00000254351 ZNF572Q7Z3I7 529 aaPredicted RBP15.72■□□□□ 0.11
SDC1-201ENST00000254351 CCDC84Q86UT8 332 aaPredicted RBP15.72■□□□□ 0.11
SDC1-201ENST00000254351 ZSCAN29Q8IWY8 852 aaPredicted RBP15.72■□□□□ 0.11
SDC1-201ENST00000254351 CCT6BQ92526 530 aa15.72■□□□□ 0.11
SDC1-201ENST00000254351 PLCB1Q9NQ66 1216 aa15.72■□□□□ 0.11
SDC1-201ENST00000254351 ABCF3Q9NUQ8 709 aa15.72■□□□□ 0.11
SDC1-201ENST00000254351 TRIM33Q9UPN9 1127 aa15.72■□□□□ 0.11
SDC1-201ENST00000254351 AKAP11Q9UKA4 1901 aa15.72■□□□□ 0.11
SDC1-201ENST00000254351 ATRNO75882 1429 aa15.72■□□□□ 0.11
SDC1-201ENST00000254351 A0A1W2PQJ5 194 aa15.72■□□□□ 0.11
SDC1-201ENST00000254351 H0YGN5 161 aa15.72■□□□□ 0.11
SDC1-201ENST00000254351 PDE8AO60658 829 aa15.72■□□□□ 0.11
SDC1-201ENST00000254351 IFI35P80217 286 aaPredicted RBP15.72■□□□□ 0.11
SDC1-201ENST00000254351 MEI1Q5TIA1 1274 aa15.72■□□□□ 0.11
SDC1-201ENST00000254351 CNNM4Q6P4Q7 775 aa15.72■□□□□ 0.11
SDC1-201ENST00000254351 LRRC34Q8IZ02 419 aa15.72■□□□□ 0.11
SDC1-201ENST00000254351 CCDC197Q8NCU1 140 aa15.72■□□□□ 0.11
SDC1-201ENST00000254351 AGAP11Q8TF27 550 aa15.72■□□□□ 0.11
SDC1-201ENST00000254351 TATDN2Q93075 761 aa15.72■□□□□ 0.11
SDC1-201ENST00000254351 CHMP6Q96FZ7 201 aa15.72■□□□□ 0.11
SDC1-201ENST00000254351 FGFBP2Q9BYJ0 223 aa15.72■□□□□ 0.11
SDC1-201ENST00000254351 NOC2LQ9Y3T9 749 aaKnown RBP15.72■□□□□ 0.11
SDC1-201ENST00000254351 NFS1Q9Y697 457 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms