RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 ZC3H4Q9UPT8 1303 aaKnown RBP22.4■■□□□ 1.18
SHKBP1-225ENST00000600733 USP17L10C9JJH3 530 aa22.4■■□□□ 1.18
SHKBP1-225ENST00000600733 RNF40O75150 1001 aa22.4■■□□□ 1.18
SHKBP1-225ENST00000600733 CXCR5P32302 372 aa22.4■■□□□ 1.18
SHKBP1-225ENST00000600733 AARSP49588 968 aaKnown RBP eCLIP22.4■■□□□ 1.18
SHKBP1-225ENST00000600733 PSMD2Q13200 908 aa22.4■■□□□ 1.18
SHKBP1-225ENST00000600733 NFRKBQ6P4R8 1299 aa22.4■■□□□ 1.18
SHKBP1-225ENST00000600733 CACNA2D4Q7Z3S7 1137 aa22.4■■□□□ 1.18
SHKBP1-225ENST00000600733 RIN2Q8WYP3 895 aaPredicted RBP22.4■■□□□ 1.18
SHKBP1-225ENST00000600733 CUL5Q93034 780 aa22.4■■□□□ 1.18
SHKBP1-225ENST00000600733 SMARCAL1Q9NZC9 954 aa22.4■■□□□ 1.18
SHKBP1-225ENST00000600733 SERPINB13Q9UIV8 391 aa22.4■■□□□ 1.18
SHKBP1-225ENST00000600733 MARCH6O60337 910 aa22.4■■□□□ 1.18
SHKBP1-225ENST00000600733 ZCWPW2Q504Y3 356 aa22.4■■□□□ 1.18
SHKBP1-225ENST00000600733 PDXDC1Q6P996 788 aa22.4■■□□□ 1.18
SHKBP1-225ENST00000600733 CCNI2Q6ZMN8 369 aaPredicted RBP22.4■■□□□ 1.18
SHKBP1-225ENST00000600733 HDAC7Q8WUI4 952 aa22.4■■□□□ 1.18
SHKBP1-225ENST00000600733 SELENOOQ9BVL4 669 aa22.4■■□□□ 1.18
SHKBP1-225ENST00000600733 MXD3Q9BW11 206 aa22.4■■□□□ 1.18
SHKBP1-225ENST00000600733 LRRC27Q9C0I9 530 aa22.4■■□□□ 1.18
SHKBP1-225ENST00000600733 NLRC4Q9NPP4 1024 aa22.4■■□□□ 1.18
SHKBP1-225ENST00000600733 PCDHA12Q9UN75 941 aa22.4■■□□□ 1.18
SHKBP1-225ENST00000600733 TRAF5O00463 557 aa22.39■■□□□ 1.17
SHKBP1-225ENST00000600733 MAGEA1P43355 309 aa22.39■■□□□ 1.17
SHKBP1-225ENST00000600733 MRPS25P82663 173 aaKnown RBP22.39■■□□□ 1.17
SHKBP1-225ENST00000600733 IQCEQ6IPM2 695 aa22.39■■□□□ 1.17
SHKBP1-225ENST00000600733 PPP1R18Q6NYC8 613 aa22.39■■□□□ 1.17
SHKBP1-225ENST00000600733 CERS5Q8N5B7 392 aa22.39■■□□□ 1.17
SHKBP1-225ENST00000600733 OSBPL9Q96SU4 736 aa22.39■■□□□ 1.17
SHKBP1-225ENST00000600733 PANK4Q9NVE7 773 aa22.39■■□□□ 1.17
SHKBP1-225ENST00000600733 EHD2Q9NZN4 543 aa22.39■■□□□ 1.17
SHKBP1-225ENST00000600733 USP21Q9UK80 565 aa22.39■■□□□ 1.17
SHKBP1-225ENST00000600733 NCK2O43639 380 aa22.38■■□□□ 1.17
SHKBP1-225ENST00000600733 SHMT1P34896 483 aa22.38■■□□□ 1.17
SHKBP1-225ENST00000600733 CACNB1Q02641 598 aaPredicted RBP22.38■■□□□ 1.17
SHKBP1-225ENST00000600733 ASTE1Q2TB18 679 aaPredicted RBP22.38■■□□□ 1.17
SHKBP1-225ENST00000600733 FAM26FQ5R3K3 315 aa22.38■■□□□ 1.17
SHKBP1-225ENST00000600733 HGSNATQ68CP4 663 aa22.38■■□□□ 1.17
SHKBP1-225ENST00000600733 KANSL2Q9H9L4 492 aa22.38■■□□□ 1.17
SHKBP1-225ENST00000600733 COL4A3BPQ9Y5P4 624 aa22.38■■□□□ 1.17
SHKBP1-225ENST00000600733 E9PMD0 336 aa22.38■■□□□ 1.17
SHKBP1-225ENST00000600733 MPHOSPH10O00566 681 aaKnown RBP22.38■■□□□ 1.17
SHKBP1-225ENST00000600733 SLC1A4P43007 532 aa22.38■■□□□ 1.17
SHKBP1-225ENST00000600733 FKBP3Q00688 224 aaKnown RBP22.38■■□□□ 1.17
SHKBP1-225ENST00000600733 RASSF7Q02833 373 aa22.38■■□□□ 1.17
SHKBP1-225ENST00000600733 CCDC40Q4G0X9 1142 aa22.38■■□□□ 1.17
SHKBP1-225ENST00000600733 PROM2Q8N271 834 aa22.38■■□□□ 1.17
SHKBP1-225ENST00000600733 PSTPIP2Q9H939 334 aa22.38■■□□□ 1.17
SHKBP1-225ENST00000600733 ARFGEF1Q9Y6D6 1849 aa22.38■■□□□ 1.17
SHKBP1-225ENST00000600733 NPHP3-ACAD11A0A0J9YXS1 232 aa22.37■■□□□ 1.17
SHKBP1-225ENST00000600733 TULP2O00295 520 aa22.37■■□□□ 1.17
SHKBP1-225ENST00000600733 MATR3P43243 847 aaKnown RBP eCLIP22.37■■□□□ 1.17
SHKBP1-225ENST00000600733 SCNN1DP51172 638 aa22.37■■□□□ 1.17
SHKBP1-225ENST00000600733 MRPL12P52815 198 aaKnown RBP22.37■■□□□ 1.17
SHKBP1-225ENST00000600733 APBA1Q02410 837 aa22.37■■□□□ 1.17
SHKBP1-225ENST00000600733 TDRD12Q587J7 1177 aaKnown RBP22.37■■□□□ 1.17
SHKBP1-225ENST00000600733 LEKR1Q6ZMV7 388 aa22.37■■□□□ 1.17
SHKBP1-225ENST00000600733 NELFCDQ8IXH7 590 aa22.37■■□□□ 1.17
SHKBP1-225ENST00000600733 SPATA4Q8NEY3 305 aa22.37■■□□□ 1.17
SHKBP1-225ENST00000600733 MTMR8Q96EF0 704 aa22.37■■□□□ 1.17
SHKBP1-225ENST00000600733 ALS2CR12Q96Q35 445 aa22.37■■□□□ 1.17
SHKBP1-225ENST00000600733 LRRC1Q9BTT6 524 aa22.37■■□□□ 1.17
SHKBP1-225ENST00000600733 THSD7AQ9UPZ6 1657 aa22.37■■□□□ 1.17
SHKBP1-225ENST00000600733 ZBTB5O15062 677 aa22.37■■□□□ 1.17
SHKBP1-225ENST00000600733 BUB1O43683 1085 aa22.37■■□□□ 1.17
SHKBP1-225ENST00000600733 IRX5P78411 483 aaPredicted RBP22.37■■□□□ 1.17
SHKBP1-225ENST00000600733 USP40Q9NVE5 1235 aa22.37■■□□□ 1.17
SHKBP1-225ENST00000600733 DMGDHQ9UI17 866 aaKnown RBP22.37■■□□□ 1.17
SHKBP1-225ENST00000600733 KIAA1024Q9UPX6 916 aa22.37■■□□□ 1.17
SHKBP1-225ENST00000600733 USP17L15C9J2P7 530 aa22.36■■□□□ 1.17
SHKBP1-225ENST00000600733 USP17L13C9JLJ4 530 aa22.36■■□□□ 1.17
SHKBP1-225ENST00000600733 USP17L11C9JVI0 530 aa22.36■■□□□ 1.17
SHKBP1-225ENST00000600733 USP17L18D6R9N7 530 aa22.36■■□□□ 1.17
SHKBP1-225ENST00000600733 USP17L22D6RA61 530 aa22.36■■□□□ 1.17
SHKBP1-225ENST00000600733 USP17L17D6RBQ6 530 aa22.36■■□□□ 1.17
SHKBP1-225ENST00000600733 USP17L19D6RCP7 530 aa22.36■■□□□ 1.17
SHKBP1-225ENST00000600733 USP17L20D6RJB6 530 aa22.36■■□□□ 1.17
SHKBP1-225ENST00000600733 NOL4O94818 638 aa22.36■■□□□ 1.17
SHKBP1-225ENST00000600733 PRPF6O94906 941 aaKnown RBP22.36■■□□□ 1.17
SHKBP1-225ENST00000600733 ADRA2BP18089 450 aa22.36■■□□□ 1.17
SHKBP1-225ENST00000600733 GGCXP38435 758 aa22.36■■□□□ 1.17
SHKBP1-225ENST00000600733 USP17L24Q0WX57 530 aa22.36■■□□□ 1.17
SHKBP1-225ENST00000600733 USP17L6PQ6QN14 398 aa22.36■■□□□ 1.17
SHKBP1-225ENST00000600733 TMC4Q7Z404 712 aa22.36■■□□□ 1.17
SHKBP1-225ENST00000600733 MMGT1Q8N4V1 131 aa22.36■■□□□ 1.17
SHKBP1-225ENST00000600733 CRACR2AQ9BSW2 395 aa22.36■■□□□ 1.17
SHKBP1-225ENST00000600733 MYH4Q9Y623 1939 aa22.36■■□□□ 1.17
SHKBP1-225ENST00000600733 POTEB3A0JP26 581 aa22.36■■□□□ 1.17
SHKBP1-225ENST00000600733 POTECB2RU33 542 aa22.36■■□□□ 1.17
SHKBP1-225ENST00000600733 PRLRP16471 622 aa22.36■■□□□ 1.17
SHKBP1-225ENST00000600733 HOXA10P31260 410 aaPredicted RBP22.36■■□□□ 1.17
SHKBP1-225ENST00000600733 DDR1Q08345 913 aa22.36■■□□□ 1.17
SHKBP1-225ENST00000600733 POTEBQ6S5H4 581 aa22.36■■□□□ 1.17
SHKBP1-225ENST00000600733 PPP1R3FQ6ZSY5 799 aaPredicted RBP22.36■■□□□ 1.17
SHKBP1-225ENST00000600733 HYOU1Q9Y4L1 999 aa22.36■■□□□ 1.17
SHKBP1-225ENST00000600733 ADAMTSL1Q8N6G6 1762 aa22.35■■□□□ 1.17
SHKBP1-225ENST00000600733 PJA2O43164 708 aa22.35■■□□□ 1.17
SHKBP1-225ENST00000600733 RAD21O60216 631 aa22.35■■□□□ 1.17
SHKBP1-225ENST00000600733 TLR2O60603 784 aa22.35■■□□□ 1.17
SHKBP1-225ENST00000600733 SLC7A5Q01650 507 aa22.35■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms