RNA–Protein interactions for RNA: ENST00000600320.5

SHKBP1-222, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-222ENST00000600320 LENG1Q96BZ8 264 aaPredicted RBP22.74■■□□□ 1.23
SHKBP1-222ENST00000600320 GPRASP2Q96D09 838 aa22.74■■□□□ 1.23
SHKBP1-222ENST00000600320 UIMC1Q96RL1 719 aa22.74■■□□□ 1.23
SHKBP1-222ENST00000600320 UNC93B1Q9H1C4 597 aa22.74■■□□□ 1.23
SHKBP1-222ENST00000600320 NOL7Q9UMY1 257 aaKnown RBP22.74■■□□□ 1.23
SHKBP1-222ENST00000600320 FIBPO43427 364 aa22.73■■□□□ 1.23
SHKBP1-222ENST00000600320 CCNT1O60563 726 aaKnown RBP22.73■■□□□ 1.23
SHKBP1-222ENST00000600320 SMPD1P17405 629 aa22.73■■□□□ 1.23
SHKBP1-222ENST00000600320 CNGA1P29973 690 aa22.73■■□□□ 1.23
SHKBP1-222ENST00000600320 TRAPPC10P48553 1259 aa22.73■■□□□ 1.23
SHKBP1-222ENST00000600320 MTMR1Q13613 665 aa22.73■■□□□ 1.23
SHKBP1-222ENST00000600320 ZNF174Q15697 407 aa22.73■■□□□ 1.23
SHKBP1-222ENST00000600320 GJC2Q5T442 439 aaPredicted RBP22.73■■□□□ 1.23
SHKBP1-222ENST00000600320 ANO1Q5XXA6 986 aa22.73■■□□□ 1.23
SHKBP1-222ENST00000600320 PPP4R3AQ6IN85 833 aa22.73■■□□□ 1.23
SHKBP1-222ENST00000600320 SCFD2Q8WU76 684 aa22.73■■□□□ 1.23
SHKBP1-222ENST00000600320 COPS5Q92905 334 aa22.73■■□□□ 1.23
SHKBP1-222ENST00000600320 ZNF333Q96JL9 665 aa22.73■■□□□ 1.23
SHKBP1-222ENST00000600320 ZSCAN16Q9H4T2 348 aaPredicted RBP22.73■■□□□ 1.23
SHKBP1-222ENST00000600320 DDX25Q9UHL0 483 aaKnown RBP22.73■■□□□ 1.23
SHKBP1-222ENST00000600320 DDX41Q9UJV9 622 aaKnown RBP22.73■■□□□ 1.23
SHKBP1-222ENST00000600320 PCDHB6Q9Y5E3 794 aa22.73■■□□□ 1.23
SHKBP1-222ENST00000600320 MRVI1Q9Y6F6 885 aa22.73■■□□□ 1.23
SHKBP1-222ENST00000600320 ATP9AO75110 1047 aa22.72■■□□□ 1.23
SHKBP1-222ENST00000600320 GCFC2P16383 781 aaKnown RBP22.72■■□□□ 1.23
SHKBP1-222ENST00000600320 SP2Q02086 613 aa22.72■■□□□ 1.23
SHKBP1-222ENST00000600320 LY6KQ17RY6 165 aa22.72■■□□□ 1.23
SHKBP1-222ENST00000600320 Q4G0T1 1027 aa22.72■■□□□ 1.23
SHKBP1-222ENST00000600320 IQSEC1Q6DN90 963 aa22.72■■□□□ 1.23
SHKBP1-222ENST00000600320 BCAS3Q9H6U6 928 aa22.72■■□□□ 1.23
SHKBP1-222ENST00000600320 AGO4Q9HCK5 861 aaKnown RBP22.72■■□□□ 1.23
SHKBP1-222ENST00000600320 HMX1Q9NP08 348 aaPredicted RBP22.72■■□□□ 1.23
SHKBP1-222ENST00000600320 KCNH7Q9NS40 1196 aa22.72■■□□□ 1.23
SHKBP1-222ENST00000600320 PKD2L1Q9P0L9 805 aa22.72■■□□□ 1.23
SHKBP1-222ENST00000600320 FAM184BQ9ULE4 1060 aa22.72■■□□□ 1.23
SHKBP1-222ENST00000600320 SEPT4O43236 478 aa22.71■■□□□ 1.23
SHKBP1-222ENST00000600320 TXNP10599 105 aaKnown RBP22.71■■□□□ 1.23
SHKBP1-222ENST00000600320 AKR1A1P14550 325 aa22.71■■□□□ 1.23
SHKBP1-222ENST00000600320 MCM7P33993 719 aa22.71■■□□□ 1.23
SHKBP1-222ENST00000600320 TTLL4Q14679 1199 aa22.71■■□□□ 1.23
SHKBP1-222ENST00000600320 RILPL1Q5EBL4 403 aa22.71■■□□□ 1.23
SHKBP1-222ENST00000600320 POTEDQ86YR6 584 aa22.71■■□□□ 1.23
SHKBP1-222ENST00000600320 GJA10Q969M2 543 aa22.71■■□□□ 1.23
SHKBP1-222ENST00000600320 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.71■■□□□ 1.23
SHKBP1-222ENST00000600320 TMEM60Q9H2L4 133 aa22.71■■□□□ 1.23
SHKBP1-222ENST00000600320 MSH4O15457 936 aa22.7■■□□□ 1.22
SHKBP1-222ENST00000600320 SORBS3O60504 671 aa22.7■■□□□ 1.22
SHKBP1-222ENST00000600320 CCL5P13501 91 aa22.7■■□□□ 1.22
SHKBP1-222ENST00000600320 KCNA2P16389 499 aa22.7■■□□□ 1.22
SHKBP1-222ENST00000600320 UBA1P22314 1058 aaKnown RBP22.7■■□□□ 1.22
SHKBP1-222ENST00000600320 SETQ01105 290 aaPredicted RBP22.7■■□□□ 1.22
SHKBP1-222ENST00000600320 TNFAIP2Q03169 654 aa22.7■■□□□ 1.22
SHKBP1-222ENST00000600320 NAP1L4Q99733 375 aaKnown RBP22.7■■□□□ 1.22
SHKBP1-222ENST00000600320 FTOQ9C0B1 505 aaKnown RBP eCLIP22.7■■□□□ 1.22
SHKBP1-222ENST00000600320 EIF4ENIF1Q9NRA8 985 aaKnown RBP22.7■■□□□ 1.22
SHKBP1-222ENST00000600320 GNEQ9Y223 722 aaKnown RBP22.7■■□□□ 1.22
SHKBP1-222ENST00000600320 POTEFA5A3E0 1075 aa22.69■■□□□ 1.22
SHKBP1-222ENST00000600320 NUCB2P80303 420 aa22.69■■□□□ 1.22
SHKBP1-222ENST00000600320 ITGB3BPQ13352 177 aaPredicted RBP22.69■■□□□ 1.22
SHKBP1-222ENST00000600320 FOXD4L6Q3SYB3 417 aaPredicted RBP22.69■■□□□ 1.22
SHKBP1-222ENST00000600320 DUSP28Q4G0W2 176 aa22.69■■□□□ 1.22
SHKBP1-222ENST00000600320 FOXD4L3Q6VB84 417 aaPredicted RBP22.69■■□□□ 1.22
SHKBP1-222ENST00000600320 ETNPPLQ8TBG4 499 aa22.69■■□□□ 1.22
SHKBP1-222ENST00000600320 CHAMP1Q96JM3 812 aa22.69■■□□□ 1.22
SHKBP1-222ENST00000600320 CDHR1Q96JP9 859 aa22.69■■□□□ 1.22
SHKBP1-222ENST00000600320 DDX20Q9UHI6 824 aaKnown RBP22.69■■□□□ 1.22
SHKBP1-222ENST00000600320 CIZ1Q9ULV3 898 aaPredicted RBP22.69■■□□□ 1.22
SHKBP1-222ENST00000600320 MAFGO15525 162 aa22.68■■□□□ 1.22
SHKBP1-222ENST00000600320 TGFB3P10600 412 aa22.68■■□□□ 1.22
SHKBP1-222ENST00000600320 IRX5P78411 483 aaPredicted RBP22.68■■□□□ 1.22
SHKBP1-222ENST00000600320 KCNV1Q6PIU1 500 aa22.68■■□□□ 1.22
SHKBP1-222ENST00000600320 HAS1Q92839 578 aa22.68■■□□□ 1.22
SHKBP1-222ENST00000600320 ZNF577Q9BSK1 485 aa22.68■■□□□ 1.22
SHKBP1-222ENST00000600320 KCNMB3Q9NPA1 279 aa22.68■■□□□ 1.22
SHKBP1-222ENST00000600320 PAK6Q9NQU5 681 aaPredicted RBP22.68■■□□□ 1.22
SHKBP1-222ENST00000600320 TELO2Q9Y4R8 837 aa22.68■■□□□ 1.22
SHKBP1-222ENST00000600320 MYH15Q9Y2K3 1946 aa22.68■■□□□ 1.22
SHKBP1-222ENST00000600320 DOCK5Q9H7D0 1870 aa22.68■■□□□ 1.22
SHKBP1-222ENST00000600320 NEMFO60524 1076 aa22.67■■□□□ 1.22
SHKBP1-222ENST00000600320 GGPS1O95749 300 aa22.67■■□□□ 1.22
SHKBP1-222ENST00000600320 ARHGAP1Q07960 439 aa22.67■■□□□ 1.22
SHKBP1-222ENST00000600320 LHX8Q68G74 356 aa22.67■■□□□ 1.22
SHKBP1-222ENST00000600320 C4orf32Q8N8J7 132 aa22.67■■□□□ 1.22
SHKBP1-222ENST00000600320 SLC5A5Q92911 643 aa22.67■■□□□ 1.22
SHKBP1-222ENST00000600320 USP28Q96RU2 1077 aa22.67■■□□□ 1.22
SHKBP1-222ENST00000600320 SENP7Q9BQF6 1050 aa22.67■■□□□ 1.22
SHKBP1-222ENST00000600320 RNF208Q9H0X6 261 aa22.67■■□□□ 1.22
SHKBP1-222ENST00000600320 CLIC4Q9Y696 253 aa22.67■■□□□ 1.22
SHKBP1-222ENST00000600320 IPO5O00410 1097 aaKnown RBP22.66■■□□□ 1.22
SHKBP1-222ENST00000600320 DHX15O43143 795 aaKnown RBP22.66■■□□□ 1.22
SHKBP1-222ENST00000600320 DUSP11O75319 330 aaKnown RBP22.66■■□□□ 1.22
SHKBP1-222ENST00000600320 ORC2Q13416 577 aaPredicted RBP22.66■■□□□ 1.22
SHKBP1-222ENST00000600320 CELF3Q5SZQ8 465 aaKnown RBP22.66■■□□□ 1.22
SHKBP1-222ENST00000600320 ABHD8Q96I13 439 aa22.66■■□□□ 1.22
SHKBP1-222ENST00000600320 MTMR9Q96QG7 549 aa22.66■■□□□ 1.22
SHKBP1-222ENST00000600320 CHMP5Q9NZZ3 219 aa22.66■■□□□ 1.22
SHKBP1-222ENST00000600320 HTTP42858 3142 aa22.66■■□□□ 1.22
SHKBP1-222ENST00000600320 NFASCO94856 1347 aa22.65■■□□□ 1.22
SHKBP1-222ENST00000600320 DDX39AO00148 427 aaKnown RBP22.65■■□□□ 1.22
SHKBP1-222ENST00000600320 NKRFO15226 690 aaKnown RBP eCLIP22.65■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms