RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 CELF3Q5SZQ8 465 aaKnown RBP18.59■□□□□ 0.57
TRIM28-206ENST00000595974 MYSM1Q5VVJ2 828 aa18.59■□□□□ 0.57
TRIM28-206ENST00000595974 NFRKBQ6P4R8 1299 aa18.59■□□□□ 0.57
TRIM28-206ENST00000595974 CCDC12Q8WUD4 166 aaPredicted RBP18.59■□□□□ 0.57
TRIM28-206ENST00000595974 ZNF274Q96GC6 653 aaPredicted RBP18.59■□□□□ 0.57
TRIM28-206ENST00000595974 ZFP91Q96JP5 570 aaPredicted RBP18.59■□□□□ 0.57
TRIM28-206ENST00000595974 ALDH8A1Q9H2A2 487 aaPredicted RBP18.59■□□□□ 0.57
TRIM28-206ENST00000595974 PCDHA6Q9UN73 950 aa18.59■□□□□ 0.57
TRIM28-206ENST00000595974 PCDHA8Q9Y5H6 950 aa18.59■□□□□ 0.57
TRIM28-206ENST00000595974 ESYT2A0FGR8 921 aa18.58■□□□□ 0.56
TRIM28-206ENST00000595974 SPATA31C2B4DYI2 1134 aa18.58■□□□□ 0.56
TRIM28-206ENST00000595974 B4GALT4O60513 344 aa18.58■□□□□ 0.56
TRIM28-206ENST00000595974 TIMP1P01033 207 aa18.58■□□□□ 0.56
TRIM28-206ENST00000595974 FOSP01100 380 aaPredicted RBP18.58■□□□□ 0.56
TRIM28-206ENST00000595974 HOXD8P13378 290 aaPredicted RBP18.58■□□□□ 0.56
TRIM28-206ENST00000595974 PTPN11Q06124 597 aaPredicted RBP18.58■□□□□ 0.56
TRIM28-206ENST00000595974 NTRK3Q16288 839 aa18.58■□□□□ 0.56
TRIM28-206ENST00000595974 NBPF20Q3BBV1 942 aa18.58■□□□□ 0.56
TRIM28-206ENST00000595974 NLRX1Q86UT6 975 aa18.58■□□□□ 0.56
TRIM28-206ENST00000595974 IL17RAQ96F46 866 aa18.58■□□□□ 0.56
TRIM28-206ENST00000595974 TANC1Q9C0D5 1861 aa18.58■□□□□ 0.56
TRIM28-206ENST00000595974 SMCO2A6NFE2 343 aa18.57■□□□□ 0.56
TRIM28-206ENST00000595974 SLC34A2O95436 690 aa18.57■□□□□ 0.56
TRIM28-206ENST00000595974 SUPT20HL2P0C7V6 817 aa18.57■□□□□ 0.56
TRIM28-206ENST00000595974 CCT2P78371 535 aaKnown RBP18.57■□□□□ 0.56
TRIM28-206ENST00000595974 SP2Q02086 613 aa18.57■□□□□ 0.56
TRIM28-206ENST00000595974 FPGSQ05932 587 aa18.57■□□□□ 0.56
TRIM28-206ENST00000595974 SEMA3FQ13275 785 aa18.57■□□□□ 0.56
TRIM28-206ENST00000595974 AP3B2Q13367 1082 aa18.57■□□□□ 0.56
TRIM28-206ENST00000595974 NEDD9Q14511 834 aa18.57■□□□□ 0.56
TRIM28-206ENST00000595974 LRIT3Q3SXY7 679 aa18.57■□□□□ 0.56
TRIM28-206ENST00000595974 PHKBQ93100 1093 aa18.57■□□□□ 0.56
TRIM28-206ENST00000595974 GPRASP2Q96D09 838 aa18.57■□□□□ 0.56
TRIM28-206ENST00000595974 CDHR1Q96JP9 859 aa18.57■□□□□ 0.56
TRIM28-206ENST00000595974 SPATA33Q96N06 139 aa18.57■□□□□ 0.56
TRIM28-206ENST00000595974 KATNAL1Q9BW62 490 aa18.57■□□□□ 0.56
TRIM28-206ENST00000595974 MLXIPQ9HAP2 919 aa18.57■□□□□ 0.56
TRIM28-206ENST00000595974 NCOA5Q9HCD5 579 aaKnown RBP18.57■□□□□ 0.56
TRIM28-206ENST00000595974 RTEL1Q9NZ71 1219 aa18.57■□□□□ 0.56
TRIM28-206ENST00000595974 F2P00734 622 aa18.56■□□□□ 0.56
TRIM28-206ENST00000595974 CLK2P49760 499 aaKnown RBP18.56■□□□□ 0.56
TRIM28-206ENST00000595974 PKN1Q16512 942 aa18.56■□□□□ 0.56
TRIM28-206ENST00000595974 HSDL1Q3SXM5 330 aa18.56■□□□□ 0.56
TRIM28-206ENST00000595974 FAM47CQ5HY64 1035 aa18.56■□□□□ 0.56
TRIM28-206ENST00000595974 MFSD5Q6N075 450 aa18.56■□□□□ 0.56
TRIM28-206ENST00000595974 SENP7Q9BQF6 1050 aa18.56■□□□□ 0.56
TRIM28-206ENST00000595974 SLC26A6Q9BXS9 759 aa18.56■□□□□ 0.56
TRIM28-206ENST00000595974 ANO3Q9BYT9 981 aa18.56■□□□□ 0.56
TRIM28-206ENST00000595974 TRPV6Q9H1D0 765 aa18.56■□□□□ 0.56
TRIM28-206ENST00000595974 HIPK3Q9H422 1215 aa18.56■□□□□ 0.56
TRIM28-206ENST00000595974 TRIP12Q14669 1992 aaPredicted RBP18.55■□□□□ 0.56
TRIM28-206ENST00000595974 CPLX1O14810 134 aa18.55■□□□□ 0.56
TRIM28-206ENST00000595974 PPFIA4O75335 1185 aa18.55■□□□□ 0.56
TRIM28-206ENST00000595974 MCTP2Q6DN12 878 aa18.55■□□□□ 0.56
TRIM28-206ENST00000595974 CPLX2Q6PUV4 134 aaKnown RBP18.55■□□□□ 0.56
TRIM28-206ENST00000595974 METTL7BQ6UX53 244 aa18.55■□□□□ 0.56
TRIM28-206ENST00000595974 SESTD1Q86VW0 696 aa18.55■□□□□ 0.56
TRIM28-206ENST00000595974 TRIM22Q8IYM9 498 aa18.55■□□□□ 0.56
TRIM28-206ENST00000595974 GIMAP8Q8ND71 665 aaPredicted RBP18.55■□□□□ 0.56
TRIM28-206ENST00000595974 CCDC148Q8NFR7 591 aa18.55■□□□□ 0.56
TRIM28-206ENST00000595974 KAT2BQ92831 832 aa18.55■□□□□ 0.56
TRIM28-206ENST00000595974 PPP1R12CQ9BZL4 782 aa18.55■□□□□ 0.56
TRIM28-206ENST00000595974 ZMYND12Q9H0C1 365 aa18.55■□□□□ 0.56
TRIM28-206ENST00000595974 UBIAD1Q9Y5Z9 338 aa18.55■□□□□ 0.56
TRIM28-206ENST00000595974 KAT6AQ92794 2004 aa18.55■□□□□ 0.56
TRIM28-206ENST00000595974 SZT2Q5T011 3432 aa18.55■□□□□ 0.56
TRIM28-206ENST00000595974 LAMA2P24043 3122 aaKnown RBP18.54■□□□□ 0.56
TRIM28-206ENST00000595974 NOP56O00567 594 aaKnown RBP18.54■□□□□ 0.56
TRIM28-206ENST00000595974 SORBS3O60504 671 aa18.54■□□□□ 0.56
TRIM28-206ENST00000595974 ZNF286BP0CG31 522 aa18.54■□□□□ 0.56
TRIM28-206ENST00000595974 ITGB5P18084 799 aa18.54■□□□□ 0.56
TRIM28-206ENST00000595974 PPIGQ13427 754 aaKnown RBP eCLIP18.54■□□□□ 0.565e-8■■□□□ 12.3
TRIM28-206ENST00000595974 ANKRD1Q15327 319 aa18.54■□□□□ 0.56
TRIM28-206ENST00000595974 TMEM199Q8N511 208 aa18.54■□□□□ 0.56
TRIM28-206ENST00000595974 NOC4LQ9BVI4 516 aaKnown RBP18.54■□□□□ 0.56
TRIM28-206ENST00000595974 C6orf50Q9HD87 102 aa18.54■□□□□ 0.56
TRIM28-206ENST00000595974 TRMT13Q9NUP7 481 aaKnown RBP18.54■□□□□ 0.56
TRIM28-206ENST00000595974 HAS3O00219 553 aa18.53■□□□□ 0.56
TRIM28-206ENST00000595974 SOX1O00570 391 aaPredicted RBP18.53■□□□□ 0.56
TRIM28-206ENST00000595974 MAFGO15525 162 aa18.53■□□□□ 0.56
TRIM28-206ENST00000595974 GNA11P29992 359 aa18.53■□□□□ 0.56
TRIM28-206ENST00000595974 SREBF1P36956 1147 aa18.53■□□□□ 0.56
TRIM28-206ENST00000595974 PSEN2P49810 448 aa18.53■□□□□ 0.56
TRIM28-206ENST00000595974 MTMR1Q13613 665 aa18.53■□□□□ 0.56
TRIM28-206ENST00000595974 MFSD10Q14728 455 aa18.53■□□□□ 0.56
TRIM28-206ENST00000595974 CYFIP1Q7L576 1253 aa18.53■□□□□ 0.56
TRIM28-206ENST00000595974 REXO1Q8N1G1 1221 aaKnown RBP18.53■□□□□ 0.56
TRIM28-206ENST00000595974 LARP6Q9BRS8 491 aaKnown RBP18.53■□□□□ 0.56
TRIM28-206ENST00000595974 JADE2Q9NQC1 790 aa18.53■□□□□ 0.56
TRIM28-206ENST00000595974 SCN5AQ14524 2016 aa18.52■□□□□ 0.56
TRIM28-206ENST00000595974 SEC24BO95487 1268 aa18.52■□□□□ 0.56
TRIM28-206ENST00000595974 CYP2C18P33260 490 aa18.52■□□□□ 0.56
TRIM28-206ENST00000595974 CHMP4BP1P59074 171 aa18.52■□□□□ 0.56
TRIM28-206ENST00000595974 SSRP1Q08945 709 aaKnown RBP18.52■□□□□ 0.56
TRIM28-206ENST00000595974 STK3Q13188 491 aa18.52■□□□□ 0.56
TRIM28-206ENST00000595974 SHHQ15465 462 aa18.52■□□□□ 0.56
TRIM28-206ENST00000595974 KIAA0753Q2KHM9 967 aa18.52■□□□□ 0.56
TRIM28-206ENST00000595974 C9orf50Q5SZB4 431 aa18.52■□□□□ 0.56
TRIM28-206ENST00000595974 BICD2Q8TD16 824 aa18.52■□□□□ 0.56
TRIM28-206ENST00000595974 PGBD1Q96JS3 809 aa18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms