RNA–Protein interactions for RNA: ENST00000578178.5

PPP4R1-208, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 4

Gene PPP4R1, Length 468 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-208	ENST00000578178	SHH	Q15465	462 aa		12.55	□□□□□ -0.4
PPP4R1-208	ENST00000578178	NBPF20	Q3BBV1	942 aa		12.55	□□□□□ -0.4
PPP4R1-208	ENST00000578178	C9orf50	Q5SZB4	431 aa		12.55	□□□□□ -0.4
PPP4R1-208	ENST00000578178	MYSM1	Q5VVJ2	828 aa		12.55	□□□□□ -0.4
PPP4R1-208	ENST00000578178	TYW1B	Q6NUM6	668 aa		12.55	□□□□□ -0.4
PPP4R1-208	ENST00000578178	SPATA33	Q96N06	139 aa		12.55	□□□□□ -0.4
PPP4R1-208	ENST00000578178	NOC4L	Q9BVI4	516 aa	Known RBP	12.55	□□□□□ -0.4
PPP4R1-208	ENST00000578178	KATNAL1	Q9BW62	490 aa		12.55	□□□□□ -0.4
PPP4R1-208	ENST00000578178	TRPV6	Q9H1D0	765 aa		12.55	□□□□□ -0.4
PPP4R1-208	ENST00000578178	EHMT1	Q9H9B1	1298 aa		12.55	□□□□□ -0.4
PPP4R1-208	ENST00000578178	TRMT13	Q9NUP7	481 aa	Known RBP	12.55	□□□□□ -0.4
PPP4R1-208	ENST00000578178	BARHL2	Q9NY43	387 aa		12.55	□□□□□ -0.4
PPP4R1-208	ENST00000578178	CYP46A1	Q9Y6A2	500 aa		12.55	□□□□□ -0.4
PPP4R1-208	ENST00000578178		V9GY48	417 aa	Predicted RBP	12.55	□□□□□ -0.4
PPP4R1-208	ENST00000578178	SZT2	Q5T011	3432 aa		12.54	□□□□□ -0.4
PPP4R1-208	ENST00000578178	SORBS3	O60504	671 aa		12.54	□□□□□ -0.4
PPP4R1-208	ENST00000578178	SUPT20HL2	P0C7V6	817 aa		12.54	□□□□□ -0.4
PPP4R1-208	ENST00000578178	ZNF286B	P0CG31	522 aa		12.54	□□□□□ -0.4
PPP4R1-208	ENST00000578178	SCG2	P13521	617 aa		12.54	□□□□□ -0.4
PPP4R1-208	ENST00000578178	ADCY7	P51828	1080 aa		12.54	□□□□□ -0.4
PPP4R1-208	ENST00000578178	EPHB4	P54760	987 aa		12.54	□□□□□ -0.4
PPP4R1-208	ENST00000578178	EVC	P57679	992 aa		12.54	□□□□□ -0.4
PPP4R1-208	ENST00000578178	SP2	Q02086	613 aa		12.54	□□□□□ -0.4
PPP4R1-208	ENST00000578178	SEMA3F	Q13275	785 aa		12.54	□□□□□ -0.4
PPP4R1-208	ENST00000578178	PFKFB3	Q16875	520 aa	Predicted RBP	12.54	□□□□□ -0.4
PPP4R1-208	ENST00000578178	HSDL1	Q3SXM5	330 aa		12.54	□□□□□ -0.4
PPP4R1-208	ENST00000578178	GPR153	Q6NV75	609 aa		12.54	□□□□□ -0.4
PPP4R1-208	ENST00000578178	NLRX1	Q86UT6	975 aa		12.54	□□□□□ -0.4
PPP4R1-208	ENST00000578178	SESTD1	Q86VW0	696 aa		12.54	□□□□□ -0.4
PPP4R1-208	ENST00000578178	TMEM199	Q8N511	208 aa		12.54	□□□□□ -0.4
PPP4R1-208	ENST00000578178	KAT2B	Q92831	832 aa		12.54	□□□□□ -0.4
PPP4R1-208	ENST00000578178	RNPC3	Q96LT9	517 aa	Known RBP	12.54	□□□□□ -0.4
PPP4R1-208	ENST00000578178	UPF3B	Q9BZI7	483 aa	Known RBP	12.54	□□□□□ -0.4
PPP4R1-208	ENST00000578178	MLXIP	Q9HAP2	919 aa		12.54	□□□□□ -0.4
PPP4R1-208	ENST00000578178	RIC8A	Q9NPQ8	531 aa		12.54	□□□□□ -0.4
PPP4R1-208	ENST00000578178	SPATA31C2	B4DYI2	1134 aa		12.53	□□□□□ -0.4
PPP4R1-208	ENST00000578178	CSF2RA	P15509	400 aa		12.53	□□□□□ -0.4
PPP4R1-208	ENST00000578178	PDIA3	P30101	505 aa	Known RBP	12.53	□□□□□ -0.4
PPP4R1-208	ENST00000578178	CYP2C18	P33260	490 aa		12.53	□□□□□ -0.4
PPP4R1-208	ENST00000578178	CHMP4BP1	P59074	171 aa		12.53	□□□□□ -0.4
PPP4R1-208	ENST00000578178	AP3B2	Q13367	1082 aa		12.53	□□□□□ -0.4
PPP4R1-208	ENST00000578178	TOB2	Q14106	344 aa	Predicted RBP	12.53	□□□□□ -0.4
PPP4R1-208	ENST00000578178	NEDD9	Q14511	834 aa		12.53	□□□□□ -0.4
PPP4R1-208	ENST00000578178	PSRC1	Q6PGN9	363 aa	Predicted RBP	12.53	□□□□□ -0.4
PPP4R1-208	ENST00000578178	METTL7B	Q6UX53	244 aa		12.53	□□□□□ -0.4
PPP4R1-208	ENST00000578178	PPP1R13L	Q8WUF5	828 aa		12.53	□□□□□ -0.4
PPP4R1-208	ENST00000578178	GPRASP2	Q96D09	838 aa		12.53	□□□□□ -0.4
PPP4R1-208	ENST00000578178	GLT8D2	Q9H1C3	349 aa		12.53	□□□□□ -0.4
PPP4R1-208	ENST00000578178	WNT8A	Q9H1J5	351 aa		12.53	□□□□□ -0.4
PPP4R1-208	ENST00000578178	RTEL1	Q9NZ71	1219 aa		12.53	□□□□□ -0.4
PPP4R1-208	ENST00000578178	PCDHA6	Q9UN73	950 aa		12.53	□□□□□ -0.4
PPP4R1-208	ENST00000578178	PCDHA8	Q9Y5H6	950 aa		12.53	□□□□□ -0.4
PPP4R1-208	ENST00000578178	UMODL1	Q5DID0	1318 aa		12.53	□□□□□ -0.4
PPP4R1-208	ENST00000578178	ESYT2	A0FGR8	921 aa		12.52	□□□□□ -0.41
PPP4R1-208	ENST00000578178	SMCO2	A6NFE2	343 aa		12.52	□□□□□ -0.41
PPP4R1-208	ENST00000578178	HAS3	O00219	553 aa		12.52	□□□□□ -0.41
PPP4R1-208	ENST00000578178	NOP56	O00567	594 aa	Known RBP	12.52	□□□□□ -0.41
PPP4R1-208	ENST00000578178	PRPF3	O43395	683 aa	Known RBP	12.52	□□□□□ -0.41
PPP4R1-208	ENST00000578178	EIF5B	O60841	1220 aa	Known RBP	12.52	□□□□□ -0.41
PPP4R1-208	ENST00000578178	PPFIA4	O75335	1185 aa		12.52	□□□□□ -0.41
PPP4R1-208	ENST00000578178	FOS	P01100	380 aa	Predicted RBP	12.52	□□□□□ -0.41
PPP4R1-208	ENST00000578178	CYP2C9	P11712	490 aa		12.52	□□□□□ -0.41
PPP4R1-208	ENST00000578178	PSEN2	P49810	448 aa		12.52	□□□□□ -0.41
PPP4R1-208	ENST00000578178	ANAPC15	P60006	121 aa		12.52	□□□□□ -0.41
PPP4R1-208	ENST00000578178	AKAP17A	Q02040	695 aa	Known RBP	12.52	□□□□□ -0.41
PPP4R1-208	ENST00000578178	MFSD10	Q14728	455 aa		12.52	□□□□□ -0.41
PPP4R1-208	ENST00000578178	NTRK3	Q16288	839 aa		12.52	□□□□□ -0.41
PPP4R1-208	ENST00000578178	CCDC12	Q8WUD4	166 aa	Predicted RBP	12.52	□□□□□ -0.41
PPP4R1-208	ENST00000578178	PHKB	Q93100	1093 aa		12.52	□□□□□ -0.41
PPP4R1-208	ENST00000578178	CDHR1	Q96JP9	859 aa		12.52	□□□□□ -0.41
PPP4R1-208	ENST00000578178	SENP7	Q9BQF6	1050 aa		12.52	□□□□□ -0.41
PPP4R1-208	ENST00000578178	RNF26	Q9BY78	433 aa	Predicted RBP	12.52	□□□□□ -0.41
PPP4R1-208	ENST00000578178	ANO3	Q9BYT9	981 aa		12.52	□□□□□ -0.41
PPP4R1-208	ENST00000578178	NCOA5	Q9HCD5	579 aa	Known RBP	12.52	□□□□□ -0.41
PPP4R1-208	ENST00000578178	NOD1	Q9Y239	953 aa		12.52	□□□□□ -0.41
PPP4R1-208	ENST00000578178	UBIAD1	Q9Y5Z9	338 aa		12.52	□□□□□ -0.41
PPP4R1-208	ENST00000578178	IFNAR1	P17181	557 aa		12.51	□□□□□ -0.41
PPP4R1-208	ENST00000578178	ITGB5	P18084	799 aa		12.51	□□□□□ -0.41
PPP4R1-208	ENST00000578178	CLK2	P49760	499 aa	Known RBP	12.51	□□□□□ -0.41
PPP4R1-208	ENST00000578178	CCL23	P55773	120 aa		12.51	□□□□□ -0.41
PPP4R1-208	ENST00000578178	CCT2	P78371	535 aa	Known RBP	12.51	□□□□□ -0.41
PPP4R1-208	ENST00000578178	MTMR1	Q13613	665 aa		12.51	□□□□□ -0.41
PPP4R1-208	ENST00000578178	PKN1	Q16512	942 aa		12.51	□□□□□ -0.41
PPP4R1-208	ENST00000578178	PTGIS	Q16647	500 aa		12.51	□□□□□ -0.41
PPP4R1-208	ENST00000578178	KIAA0753	Q2KHM9	967 aa		12.51	□□□□□ -0.41
PPP4R1-208	ENST00000578178	GDF6	Q6KF10	455 aa	Predicted RBP	12.51	□□□□□ -0.41
PPP4R1-208	ENST00000578178	CYFIP1	Q7L576	1253 aa		12.51	□□□□□ -0.41
PPP4R1-208	ENST00000578178	C7orf31	Q8N865	590 aa		12.51	□□□□□ -0.41
PPP4R1-208	ENST00000578178	GIMAP8	Q8ND71	665 aa	Predicted RBP	12.51	□□□□□ -0.41
PPP4R1-208	ENST00000578178	PGBD1	Q96JS3	809 aa		12.51	□□□□□ -0.41
PPP4R1-208	ENST00000578178	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	12.51	□□□□□ -0.41	2e-13	■■■■□ 22.1
PPP4R1-208	ENST00000578178	IL23A	Q9NPF7	189 aa		12.51	□□□□□ -0.41
PPP4R1-208	ENST00000578178	PDRG1	Q9NUG6	133 aa		12.51	□□□□□ -0.41
PPP4R1-208	ENST00000578178	GTF2IRD1	Q9UHL9	959 aa		12.51	□□□□□ -0.41
PPP4R1-208	ENST00000578178	SCN5A	Q14524	2016 aa		12.5	□□□□□ -0.41
PPP4R1-208	ENST00000578178	PITPNM1	O00562	1244 aa		12.5	□□□□□ -0.41
PPP4R1-208	ENST00000578178	LGALS2	P05162	132 aa		12.5	□□□□□ -0.41
PPP4R1-208	ENST00000578178	KCNA2	P16389	499 aa		12.5	□□□□□ -0.41
PPP4R1-208	ENST00000578178	SREBF1	P36956	1147 aa		12.5	□□□□□ -0.41
PPP4R1-208	ENST00000578178	SMAD3	P84022	425 aa	Known RBP	12.5	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms