RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 PPEF1O14829 653 aaPredicted RBP14.94□□□□□ -0.02
SHMT2-222ENST00000555774 EPHB6O15197 1021 aa14.94□□□□□ -0.02
SHMT2-222ENST00000555774 NKRFO15226 690 aaKnown RBP eCLIP14.94□□□□□ -0.02
SHMT2-222ENST00000555774 PPP1R11O60927 126 aaPredicted RBP14.94□□□□□ -0.02
SHMT2-222ENST00000555774 HLA-DOAP06340 250 aa14.94□□□□□ -0.02
SHMT2-222ENST00000555774 PLEKP08567 350 aaPredicted RBP14.94□□□□□ -0.02
SHMT2-222ENST00000555774 ASTE1Q2TB18 679 aaPredicted RBP14.94□□□□□ -0.02
SHMT2-222ENST00000555774 RRAGAQ7L523 313 aa14.94□□□□□ -0.02
SHMT2-222ENST00000555774 CCDC65Q8IXS2 484 aa14.94□□□□□ -0.02
SHMT2-222ENST00000555774 RNF10Q8N5U6 811 aaKnown RBP14.94□□□□□ -0.02
SHMT2-222ENST00000555774 COG1Q8WTW3 980 aa14.94□□□□□ -0.02
SHMT2-222ENST00000555774 CCDC17Q96LX7 622 aa14.94□□□□□ -0.02
SHMT2-222ENST00000555774 EHD4Q9H223 541 aa14.94□□□□□ -0.02
SHMT2-222ENST00000555774 LUC7LQ9NQ29 371 aaKnown RBP14.94□□□□□ -0.02
SHMT2-222ENST00000555774 PANK4Q9NVE7 773 aa14.94□□□□□ -0.02
SHMT2-222ENST00000555774 PCDHA12Q9UN75 941 aa14.94□□□□□ -0.02
SHMT2-222ENST00000555774 FAN1Q9Y2M0 1017 aa14.94□□□□□ -0.02
SHMT2-222ENST00000555774 DUSP10Q9Y6W6 482 aa14.94□□□□□ -0.02
SHMT2-222ENST00000555774 MARCH6O60337 910 aa14.93□□□□□ -0.02
SHMT2-222ENST00000555774 RPS6KA5O75582 802 aa14.93□□□□□ -0.02
SHMT2-222ENST00000555774 SHMT1P34896 483 aa14.93□□□□□ -0.02
SHMT2-222ENST00000555774 ACTN2P35609 894 aa14.93□□□□□ -0.02
SHMT2-222ENST00000555774 MAGEA1P43355 309 aa14.93□□□□□ -0.02
SHMT2-222ENST00000555774 ZSCAN26Q16670 478 aa14.93□□□□□ -0.02
SHMT2-222ENST00000555774 UBE2SQ16763 222 aa14.93□□□□□ -0.02
SHMT2-222ENST00000555774 MCTP2Q6DN12 878 aa14.93□□□□□ -0.02
SHMT2-222ENST00000555774 MOXD1Q6UVY6 613 aa14.93□□□□□ -0.02
SHMT2-222ENST00000555774 CCNI2Q6ZMN8 369 aaPredicted RBP14.93□□□□□ -0.02
SHMT2-222ENST00000555774 CACNA2D4Q7Z3S7 1137 aa14.93□□□□□ -0.02
SHMT2-222ENST00000555774 KRT26Q7Z3Y9 468 aa14.93□□□□□ -0.02
SHMT2-222ENST00000555774 CREG2Q8IUH2 290 aa14.93□□□□□ -0.02
SHMT2-222ENST00000555774 PSTPIP2Q9H939 334 aa14.93□□□□□ -0.02
SHMT2-222ENST00000555774 LRRC4BQ9NT99 713 aa14.93□□□□□ -0.02
SHMT2-222ENST00000555774 HPCAL4Q9UM19 191 aa14.93□□□□□ -0.02
SHMT2-222ENST00000555774 GREB1LQ9C091 1923 aaPredicted RBP14.93□□□□□ -0.02
SHMT2-222ENST00000555774 PDE2AO00408 941 aaPredicted RBP14.93□□□□□ -0.02
SHMT2-222ENST00000555774 USP11P51784 963 aa14.93□□□□□ -0.02
SHMT2-222ENST00000555774 PPP4R3CPQ6ZMV5 832 aa14.93□□□□□ -0.02
SHMT2-222ENST00000555774 ZC3H3Q8IXZ2 948 aaKnown RBP14.93□□□□□ -0.02
SHMT2-222ENST00000555774 DDX4Q9NQI0 724 aaKnown RBP14.93□□□□□ -0.02
SHMT2-222ENST00000555774 FAM184BQ9ULE4 1060 aa14.93□□□□□ -0.02
SHMT2-222ENST00000555774 CAPN6Q9Y6Q1 641 aa14.93□□□□□ -0.02
SHMT2-222ENST00000555774 CYP3A7-CYP3A51PA0A087WV96 503 aa14.92□□□□□ -0.02
SHMT2-222ENST00000555774 N4BP1O75113 896 aaKnown RBP14.92□□□□□ -0.02
SHMT2-222ENST00000555774 IVLP07476 585 aa14.92□□□□□ -0.02
SHMT2-222ENST00000555774 CYP3A7P24462 503 aa14.92□□□□□ -0.02
SHMT2-222ENST00000555774 TNNT3P45378 269 aaPredicted RBP14.92□□□□□ -0.02
SHMT2-222ENST00000555774 GYS2P54840 703 aa14.92□□□□□ -0.02
SHMT2-222ENST00000555774 EIF6P56537 245 aaKnown RBP14.92□□□□□ -0.02
SHMT2-222ENST00000555774 SLC9C1Q4G0N8 1177 aa14.92□□□□□ -0.02
SHMT2-222ENST00000555774 CCDC40Q4G0X9 1142 aa14.92□□□□□ -0.02
SHMT2-222ENST00000555774 HHIPL2Q6UWX4 724 aa14.92□□□□□ -0.02
SHMT2-222ENST00000555774 LEKR1Q6ZMV7 388 aa14.92□□□□□ -0.02
SHMT2-222ENST00000555774 MBOAT7Q96N66 472 aa14.92□□□□□ -0.02
SHMT2-222ENST00000555774 USP40Q9NVE5 1235 aa14.92□□□□□ -0.02
SHMT2-222ENST00000555774 RNF14Q9UBS8 474 aa14.92□□□□□ -0.02
SHMT2-222ENST00000555774 ATP6V0A2Q9Y487 856 aa14.92□□□□□ -0.02
SHMT2-222ENST00000555774 SPATA31A6Q5VVP1 1343 aa14.92□□□□□ -0.02
SHMT2-222ENST00000555774 ZNF185O15231 689 aa14.92□□□□□ -0.02
SHMT2-222ENST00000555774 KCNMA1Q12791 1236 aa14.92□□□□□ -0.02
SHMT2-222ENST00000555774 ECM1Q16610 540 aa14.92□□□□□ -0.02
SHMT2-222ENST00000555774 FAM182BQ5T319 152 aa14.92□□□□□ -0.02
SHMT2-222ENST00000555774 NOX5Q96PH1 765 aa14.92□□□□□ -0.02
SHMT2-222ENST00000555774 OSBPL9Q96SU4 736 aa14.92□□□□□ -0.02
SHMT2-222ENST00000555774 TANGO6Q9C0B7 1094 aa14.92□□□□□ -0.02
SHMT2-222ENST00000555774 MLXIPQ9HAP2 919 aa14.92□□□□□ -0.02
SHMT2-222ENST00000555774 KCNMB3Q9NPA1 279 aa14.92□□□□□ -0.02
SHMT2-222ENST00000555774 STK24Q9Y6E0 443 aa14.92□□□□□ -0.02
SHMT2-222ENST00000555774 PITPNM2Q9BZ72 1349 aa14.91□□□□□ -0.02
SHMT2-222ENST00000555774 TRAF5O00463 557 aa14.91□□□□□ -0.02
SHMT2-222ENST00000555774 MOCS3O95396 460 aa14.91□□□□□ -0.02
SHMT2-222ENST00000555774 SERPING1P05155 500 aa14.91□□□□□ -0.02
SHMT2-222ENST00000555774 AP3B2Q13367 1082 aa14.91□□□□□ -0.02
SHMT2-222ENST00000555774 LRRC41Q15345 812 aa14.91□□□□□ -0.02
SHMT2-222ENST00000555774 SLC27A3Q5K4L6 730 aa14.91□□□□□ -0.02
SHMT2-222ENST00000555774 HGSNATQ68CP4 663 aa14.91□□□□□ -0.02
SHMT2-222ENST00000555774 SLFN12Q8IYM2 578 aa14.91□□□□□ -0.02
SHMT2-222ENST00000555774 GOLGA6L1Q8N7Z2 621 aa14.91□□□□□ -0.02
SHMT2-222ENST00000555774 DCAF4Q8WV16 495 aa14.91□□□□□ -0.02
SHMT2-222ENST00000555774 PCDHA2Q9Y5H9 948 aa14.91□□□□□ -0.02
SHMT2-222ENST00000555774 FRMD3A2A2Y4 597 aa14.91□□□□□ -0.02
SHMT2-222ENST00000555774 USP17L10C9JJH3 530 aa14.91□□□□□ -0.02
SHMT2-222ENST00000555774 POLRMTO00411 1230 aaKnown RBP14.91□□□□□ -0.02
SHMT2-222ENST00000555774 PLA2G4BP0C869 781 aa14.91□□□□□ -0.02
SHMT2-222ENST00000555774 C2orf54Q08AI8 447 aa14.91□□□□□ -0.02
SHMT2-222ENST00000555774 EDRF1Q3B7T1 1238 aa14.91□□□□□ -0.02
SHMT2-222ENST00000555774 SFMBT2Q5VUG0 894 aa14.91□□□□□ -0.02
SHMT2-222ENST00000555774 TTBK2Q6IQ55 1244 aa14.91□□□□□ -0.02
SHMT2-222ENST00000555774 TRIM59Q8IWR1 403 aa14.91□□□□□ -0.02
SHMT2-222ENST00000555774 CRACR2AQ9BSW2 395 aa14.91□□□□□ -0.02
SHMT2-222ENST00000555774 RNF216Q9NWF9 866 aaPredicted RBP14.91□□□□□ -0.02
SHMT2-222ENST00000555774 ZC3H4Q9UPT8 1303 aaKnown RBP14.9□□□□□ -0.02
SHMT2-222ENST00000555774 A0A0U1RQG5 324 aaPredicted RBP14.9□□□□□ -0.02
SHMT2-222ENST00000555774 SYF2O95926 243 aaKnown RBP14.9□□□□□ -0.02
SHMT2-222ENST00000555774 HMGB2P26583 209 aaKnown RBP14.9□□□□□ -0.02
SHMT2-222ENST00000555774 TNFRSF8P28908 595 aa14.9□□□□□ -0.02
SHMT2-222ENST00000555774 DDR1Q08345 913 aa14.9□□□□□ -0.02
SHMT2-222ENST00000555774 HAUS3Q68CZ6 603 aa14.9□□□□□ -0.02
SHMT2-222ENST00000555774 CERS5Q8N5B7 392 aa14.9□□□□□ -0.02
SHMT2-222ENST00000555774 SPATA4Q8NEY3 305 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms