RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 C17orf80Q9BSJ5 609 aa19.74■□□□□ 0.75
VPS29-204ENST00000548259 PRKAG3Q9UGI9 489 aa19.74■□□□□ 0.75
VPS29-204ENST00000548259 COL4A4P53420 1690 aaPredicted RBP19.73■□□□□ 0.75
VPS29-204ENST00000548259 NR3C2P08235 984 aa19.73■□□□□ 0.75
VPS29-204ENST00000548259 HTRA4P83105 476 aaPredicted RBP19.73■□□□□ 0.75
VPS29-204ENST00000548259 TRIM71Q2Q1W2 868 aaKnown RBP19.73■□□□□ 0.75
VPS29-204ENST00000548259 EPC2Q52LR7 807 aa19.73■□□□□ 0.75
VPS29-204ENST00000548259 EP400NLQ6ZTU2 488 aa19.73■□□□□ 0.75
VPS29-204ENST00000548259 ADGRF4Q8IZF3 695 aa19.73■□□□□ 0.75
VPS29-204ENST00000548259 DBF4BQ8NFT6 615 aa19.73■□□□□ 0.75
VPS29-204ENST00000548259 NEK9Q8TD19 979 aa19.73■□□□□ 0.75
VPS29-204ENST00000548259 SEPT8Q92599 483 aa19.73■□□□□ 0.75
VPS29-204ENST00000548259 BRWD1Q9NSI6 2320 aa19.73■□□□□ 0.75
VPS29-204ENST00000548259 CFBP00751 764 aa19.72■□□□□ 0.75
VPS29-204ENST00000548259 GPM6BQ13491 265 aa19.72■□□□□ 0.75
VPS29-204ENST00000548259 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19.72■□□□□ 0.751e-9■□□□□ 9.6
VPS29-204ENST00000548259 SERINC5Q86VE9 423 aa19.72■□□□□ 0.75
VPS29-204ENST00000548259 SP7Q8TDD2 431 aaPredicted RBP19.72■□□□□ 0.75
VPS29-204ENST00000548259 TBC1D5Q92609 795 aa19.72■□□□□ 0.75
VPS29-204ENST00000548259 PABPC5Q96DU9 382 aaKnown RBP19.72■□□□□ 0.75
VPS29-204ENST00000548259 FAM227BQ96M60 508 aa19.72■□□□□ 0.75
VPS29-204ENST00000548259 SPATA33Q96N06 139 aa19.72■□□□□ 0.75
VPS29-204ENST00000548259 PXMP2Q9NR77 195 aa19.72■□□□□ 0.75
VPS29-204ENST00000548259 MAP3K20Q9NYL2 800 aaKnown RBP19.72■□□□□ 0.75
VPS29-204ENST00000548259 COL20A1Q9P218 1284 aa19.72■□□□□ 0.75
VPS29-204ENST00000548259 C17orf102A2RUQ5 167 aa19.71■□□□□ 0.75
VPS29-204ENST00000548259 H3BNC9 293 aa19.71■□□□□ 0.75
VPS29-204ENST00000548259 H3BQ06 376 aaPredicted RBP19.71■□□□□ 0.75
VPS29-204ENST00000548259 ZNF213O14771 459 aa19.71■□□□□ 0.75
VPS29-204ENST00000548259 CAND2O75155 1236 aa19.71■□□□□ 0.75
VPS29-204ENST00000548259 TGFB3P10600 412 aa19.71■□□□□ 0.75
VPS29-204ENST00000548259 TCTN1Q2MV58 587 aa19.71■□□□□ 0.75
VPS29-204ENST00000548259 ANKRD45Q5TZF3 282 aa19.71■□□□□ 0.75
VPS29-204ENST00000548259 TRAF7Q6Q0C0 670 aa19.71■□□□□ 0.75
VPS29-204ENST00000548259 NSUN3Q9H649 340 aaKnown RBP19.71■□□□□ 0.75
VPS29-204ENST00000548259 CCDC171Q6TFL3 1326 aa19.71■□□□□ 0.75
VPS29-204ENST00000548259 A0A0D9SFI3 127 aa19.7■□□□□ 0.74
VPS29-204ENST00000548259 PARP1P09874 1014 aaKnown RBP19.7■□□□□ 0.74
VPS29-204ENST00000548259 GNAT1P11488 350 aa19.7■□□□□ 0.74
VPS29-204ENST00000548259 HOXD8P13378 290 aaPredicted RBP19.7■□□□□ 0.74
VPS29-204ENST00000548259 TRAF1Q13077 416 aa19.7■□□□□ 0.74
VPS29-204ENST00000548259 MBTPS1Q14703 1052 aa19.7■□□□□ 0.74
VPS29-204ENST00000548259 QRICH1Q2TAL8 776 aa19.7■□□□□ 0.74
VPS29-204ENST00000548259 PLEKHG4Q58EX7 1191 aa19.7■□□□□ 0.74
VPS29-204ENST00000548259 MYSM1Q5VVJ2 828 aa19.7■□□□□ 0.74
VPS29-204ENST00000548259 ATP6V0A1Q93050 837 aa19.7■□□□□ 0.74
VPS29-204ENST00000548259 POP1Q99575 1024 aaKnown RBP19.7■□□□□ 0.74
VPS29-204ENST00000548259 ZKSCAN3Q9BRR0 538 aa19.7■□□□□ 0.74
VPS29-204ENST00000548259 AMNQ9BXJ7 453 aa19.7■□□□□ 0.74
VPS29-204ENST00000548259 CPVLQ9H3G5 476 aa19.7■□□□□ 0.74
VPS29-204ENST00000548259 MLXIPQ9HAP2 919 aa19.7■□□□□ 0.74
VPS29-204ENST00000548259 GGPS1O95749 300 aa19.69■□□□□ 0.74
VPS29-204ENST00000548259 MYCLP12524 364 aaPredicted RBP19.69■□□□□ 0.74
VPS29-204ENST00000548259 MRE11P49959 708 aa19.69■□□□□ 0.74
VPS29-204ENST00000548259 ZNF200P98182 395 aaPredicted RBP19.69■□□□□ 0.74
VPS29-204ENST00000548259 CELF3Q5SZQ8 465 aaKnown RBP19.69■□□□□ 0.74
VPS29-204ENST00000548259 TMEM192Q8IY95 271 aa19.69■□□□□ 0.74
VPS29-204ENST00000548259 SAMD3Q8N6K7 520 aa19.69■□□□□ 0.74
VPS29-204ENST00000548259 APBB2Q92870 758 aa19.69■□□□□ 0.74
VPS29-204ENST00000548259 TOP1MTQ969P6 601 aa19.69■□□□□ 0.74
VPS29-204ENST00000548259 VAT1LQ9HCJ6 419 aa19.69■□□□□ 0.74
VPS29-204ENST00000548259 TRIP12Q14669 1992 aaPredicted RBP19.68■□□□□ 0.74
VPS29-204ENST00000548259 TRIM6-TRIM34B2RNG4 842 aa19.68■□□□□ 0.74
VPS29-204ENST00000548259 PDE1AP54750 535 aa19.68■□□□□ 0.74
VPS29-204ENST00000548259 TCEAL5Q5H9L2 206 aa19.68■□□□□ 0.74
VPS29-204ENST00000548259 DIEXFQ68CQ4 756 aaKnown RBP19.68■□□□□ 0.74
VPS29-204ENST00000548259 TBC1D10CQ8IV04 446 aa19.68■□□□□ 0.74
VPS29-204ENST00000548259 ADHFE1Q8IWW8 467 aa19.68■□□□□ 0.74
VPS29-204ENST00000548259 WNT8BQ93098 351 aa19.68■□□□□ 0.74
VPS29-204ENST00000548259 MFSD14AQ96MC6 490 aa19.68■□□□□ 0.74
VPS29-204ENST00000548259 IFIH1Q9BYX4 1025 aaKnown RBP19.68■□□□□ 0.74
VPS29-204ENST00000548259 RWDD3Q9Y3V2 267 aa19.68■□□□□ 0.74
VPS29-204ENST00000548259 PCDHB15Q9Y5E8 787 aa19.68■□□□□ 0.74
VPS29-204ENST00000548259 SALL3Q9BXA9 1300 aa19.68■□□□□ 0.74
VPS29-204ENST00000548259 POTEB3A0JP26 581 aa19.67■□□□□ 0.74
VPS29-204ENST00000548259 H3BRB1 525 aa19.67■□□□□ 0.74
VPS29-204ENST00000548259 NOP56O00567 594 aaKnown RBP19.67■□□□□ 0.74
VPS29-204ENST00000548259 UPP2O95045 317 aa19.67■□□□□ 0.74
VPS29-204ENST00000548259 HSD17B4P51659 736 aa19.67■□□□□ 0.74
VPS29-204ENST00000548259 NMIQ13287 307 aaPredicted RBP19.67■□□□□ 0.74
VPS29-204ENST00000548259 HSDL1Q3SXM5 330 aa19.67■□□□□ 0.74
VPS29-204ENST00000548259 POTEBQ6S5H4 581 aa19.67■□□□□ 0.74
VPS29-204ENST00000548259 ZNF589Q86UQ0 364 aaPredicted RBP19.67■□□□□ 0.74
VPS29-204ENST00000548259 ANKS1AQ92625 1134 aa19.67■□□□□ 0.74
VPS29-204ENST00000548259 ZSCAN10Q96SZ4 725 aaPredicted RBP19.67■□□□□ 0.74
VPS29-204ENST00000548259 PDCD2LQ9BRP1 358 aa19.67■□□□□ 0.74
VPS29-204ENST00000548259 TUT1Q9H6E5 874 aaKnown RBP19.67■□□□□ 0.74
VPS29-204ENST00000548259 CLDND1Q9NY35 253 aa19.67■□□□□ 0.74
VPS29-204ENST00000548259 KDM4AO75164 1064 aa19.66■□□□□ 0.74
VPS29-204ENST00000548259 CCND2P30279 289 aa19.66■□□□□ 0.74
VPS29-204ENST00000548259 NHLH1Q02575 133 aa19.66■□□□□ 0.74
VPS29-204ENST00000548259 ZP2Q05996 745 aa19.66■□□□□ 0.74
VPS29-204ENST00000548259 VSIG10LQ86VR7 867 aa19.66■□□□□ 0.74
VPS29-204ENST00000548259 FIBCD1Q8N539 461 aa19.66■□□□□ 0.74
VPS29-204ENST00000548259 IL17RAQ96F46 866 aa19.66■□□□□ 0.74
VPS29-204ENST00000548259 UBAC1Q9BSL1 405 aa19.66■□□□□ 0.74
VPS29-204ENST00000548259 C11orf84Q9BUA3 381 aaPredicted RBP19.66■□□□□ 0.74
VPS29-204ENST00000548259 USP26Q9BXU7 913 aa19.66■□□□□ 0.74
VPS29-204ENST00000548259 LMAN2LQ9H0V9 348 aa19.66■□□□□ 0.74
VPS29-204ENST00000548259 JMJD4Q9H9V9 463 aa19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms