RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 GJA10Q969M2 543 aa15.8■□□□□ 0.12
SDC1-201ENST00000254351 PARP4Q9UKK3 1724 aaKnown RBP15.8■□□□□ 0.12
SDC1-201ENST00000254351 PLCH1Q4KWH8 1693 aa15.8■□□□□ 0.12
SDC1-201ENST00000254351 CNTNAP5Q8WYK1 1306 aa15.8■□□□□ 0.12
SDC1-201ENST00000254351 TSPY2A6NKD2 308 aa15.8■□□□□ 0.12
SDC1-201ENST00000254351 HMGB1P1B2RPK0 211 aaPredicted RBP15.8■□□□□ 0.12
SDC1-201ENST00000254351 CTNND1O60716 968 aaKnown RBP15.8■□□□□ 0.12
SDC1-201ENST00000254351 ITGA4P13612 1032 aa15.8■□□□□ 0.12
SDC1-201ENST00000254351 LONP1P36776 959 aaKnown RBP15.8■□□□□ 0.12
SDC1-201ENST00000254351 CACNB1Q02641 598 aaPredicted RBP15.8■□□□□ 0.12
SDC1-201ENST00000254351 TAX1BP1Q86VP1 789 aa15.8■□□□□ 0.12
SDC1-201ENST00000254351 NLRP10Q86W26 655 aa15.8■□□□□ 0.12
SDC1-201ENST00000254351 KIAA0895Q8NCT3 520 aa15.8■□□□□ 0.12
SDC1-201ENST00000254351 NSMCE1Q8WV22 266 aa15.8■□□□□ 0.12
SDC1-201ENST00000254351 TAF4BQ92750 862 aa15.8■□□□□ 0.12
SDC1-201ENST00000254351 TRIM6Q9C030 488 aaPredicted RBP15.8■□□□□ 0.12
SDC1-201ENST00000254351 TMBIM4Q9HC24 238 aa15.8■□□□□ 0.12
SDC1-201ENST00000254351 RHOBTB3O94955 611 aa15.79■□□□□ 0.12
SDC1-201ENST00000254351 TXKP42681 527 aa15.79■□□□□ 0.12
SDC1-201ENST00000254351 SLCO1A2P46721 670 aa15.79■□□□□ 0.12
SDC1-201ENST00000254351 GKAP1Q5VSY0 366 aaPredicted RBP15.79■□□□□ 0.12
SDC1-201ENST00000254351 NELFCDQ8IXH7 590 aa15.79■□□□□ 0.12
SDC1-201ENST00000254351 SPDL1Q96EA4 605 aa15.79■□□□□ 0.12
SDC1-201ENST00000254351 TRIM9Q9C026 710 aa15.79■□□□□ 0.12
SDC1-201ENST00000254351 STK38LQ9Y2H1 464 aa15.79■□□□□ 0.12
SDC1-201ENST00000254351 ARID4AP29374 1257 aaPredicted RBP15.79■□□□□ 0.12
SDC1-201ENST00000254351 BIRC2Q13490 618 aa15.79■□□□□ 0.12
SDC1-201ENST00000254351 SPATS2Q86XZ4 545 aaKnown RBP15.79■□□□□ 0.12
SDC1-201ENST00000254351 TEX11Q8IYF3 940 aa15.79■□□□□ 0.12
SDC1-201ENST00000254351 PNMA2Q9UL42 364 aa15.79■□□□□ 0.12
SDC1-201ENST00000254351 A0A087X0T9 212 aa15.79■□□□□ 0.12
SDC1-201ENST00000254351 FAM228BP0C875 321 aa15.79■□□□□ 0.12
SDC1-201ENST00000254351 CDC37Q16543 378 aaPredicted RBP15.79■□□□□ 0.12
SDC1-201ENST00000254351 C6orf89Q6UWU4 347 aa15.79■□□□□ 0.12
SDC1-201ENST00000254351 PRCCQ92733 491 aaPredicted RBP15.79■□□□□ 0.12
SDC1-201ENST00000254351 ZHX3Q9H4I2 956 aa15.79■□□□□ 0.12
SDC1-201ENST00000254351 NOD2Q9HC29 1040 aa15.79■□□□□ 0.12
SDC1-201ENST00000254351 MLXIPLQ9NP71 852 aa15.79■□□□□ 0.12
SDC1-201ENST00000254351 TCP11L1Q9NUJ3 509 aa15.79■□□□□ 0.12
SDC1-201ENST00000254351 BICDL2A1A5D9 508 aa15.78■□□□□ 0.12
SDC1-201ENST00000254351 IL2RBP14784 551 aa15.78■□□□□ 0.12
SDC1-201ENST00000254351 DHX9Q08211 1270 aaKnown RBP15.78■□□□□ 0.12
SDC1-201ENST00000254351 KIF2BQ8N4N8 673 aa15.78■□□□□ 0.12
SDC1-201ENST00000254351 RETREG2Q8NC44 543 aa15.78■□□□□ 0.12
SDC1-201ENST00000254351 MGARPQ8TDB4 240 aa15.78■□□□□ 0.12
SDC1-201ENST00000254351 MICAL1Q8TDZ2 1067 aa15.78■□□□□ 0.12
SDC1-201ENST00000254351 CCDC47Q96A33 483 aaKnown RBP15.78■□□□□ 0.12
SDC1-201ENST00000254351 FAM167BQ9BTA0 163 aa15.78■□□□□ 0.12
SDC1-201ENST00000254351 KIF9Q9HAQ2 790 aa15.78■□□□□ 0.12
SDC1-201ENST00000254351 A0A1B0GUA9 196 aa15.78■□□□□ 0.12
SDC1-201ENST00000254351 TRAPPC3O43617 180 aa15.78■□□□□ 0.12
SDC1-201ENST00000254351 LLGL1Q15334 1064 aa15.78■□□□□ 0.12
SDC1-201ENST00000254351 FAM114A1Q8IWE2 563 aa15.78■□□□□ 0.12
SDC1-201ENST00000254351 C4orf32Q8N8J7 132 aa15.78■□□□□ 0.12
SDC1-201ENST00000254351 ZCRB1Q8TBF4 217 aaKnown RBP15.78■□□□□ 0.12
SDC1-201ENST00000254351 DHTKD1Q96HY7 919 aaPredicted RBP15.78■□□□□ 0.12
SDC1-201ENST00000254351 MTFR1LQ9H019 292 aa15.78■□□□□ 0.12
SDC1-201ENST00000254351 SPATA31A6Q5VVP1 1343 aa15.77■□□□□ 0.12
SDC1-201ENST00000254351 MYH6P13533 1939 aa15.77■□□□□ 0.12
SDC1-201ENST00000254351 VIMP08670 466 aaKnown RBP15.77■□□□□ 0.12
SDC1-201ENST00000254351 ELAC2Q9BQ52 826 aaKnown RBP15.77■□□□□ 0.12
SDC1-201ENST00000254351 LSM14BQ9BX40 385 aaKnown RBP15.77■□□□□ 0.12
SDC1-201ENST00000254351 TAF1DQ9H5J8 278 aaPredicted RBP15.77■□□□□ 0.12
SDC1-201ENST00000254351 SIK3Q9Y2K2 1263 aa15.77■□□□□ 0.12
SDC1-201ENST00000254351 ADAMTS7Q9UKP4 1686 aa15.77■□□□□ 0.12
SDC1-201ENST00000254351 PPP2R2AP63151 447 aa15.77■□□□□ 0.11
SDC1-201ENST00000254351 CCDC38Q502W7 563 aa15.77■□□□□ 0.11
SDC1-201ENST00000254351 YTHDF3Q7Z739 585 aaKnown RBP15.77■□□□□ 0.11
SDC1-201ENST00000254351 ZNF622Q969S3 477 aaKnown RBP eCLIP15.77■□□□□ 0.11
SDC1-201ENST00000254351 NRAPQ86VF7 1730 aa15.77■□□□□ 0.11
SDC1-201ENST00000254351 EME2A4GXA9 379 aaPredicted RBP15.77■□□□□ 0.11
SDC1-201ENST00000254351 TTI1O43156 1089 aa15.77■□□□□ 0.11
SDC1-201ENST00000254351 SART1O43290 800 aaKnown RBP15.77■□□□□ 0.11
SDC1-201ENST00000254351 BYSLQ13895 437 aaKnown RBP15.77■□□□□ 0.11
SDC1-201ENST00000254351 KCNV2Q8TDN2 545 aa15.77■□□□□ 0.11
SDC1-201ENST00000254351 PLCD4Q9BRC7 762 aa15.77■□□□□ 0.11
SDC1-201ENST00000254351 TRIM51Q9BSJ1 452 aa15.77■□□□□ 0.11
SDC1-201ENST00000254351 A1CFQ9NQ94 594 aaKnown RBP15.77■□□□□ 0.11
SDC1-201ENST00000254351 KBTBD4Q9NVX7 518 aa15.77■□□□□ 0.11
SDC1-201ENST00000254351 SLIT2O94813 1529 aa15.76■□□□□ 0.11
SDC1-201ENST00000254351 A6NNZ2 444 aa15.76■□□□□ 0.11
SDC1-201ENST00000254351 TRAF5O00463 557 aa15.76■□□□□ 0.11
SDC1-201ENST00000254351 C21orf2O43822 256 aa15.76■□□□□ 0.11
SDC1-201ENST00000254351 TLR2O60603 784 aa15.76■□□□□ 0.11
SDC1-201ENST00000254351 HSPA1LP34931 641 aa15.76■□□□□ 0.11
SDC1-201ENST00000254351 TNNC1P63316 161 aa15.76■□□□□ 0.11
SDC1-201ENST00000254351 SATB1Q01826 763 aa15.76■□□□□ 0.11
SDC1-201ENST00000254351 TUBB8Q3ZCM7 444 aa15.76■□□□□ 0.11
SDC1-201ENST00000254351 ARFGAP2Q8N6H7 521 aa15.76■□□□□ 0.11
SDC1-201ENST00000254351 ERGIC2Q96RQ1 377 aa15.76■□□□□ 0.11
SDC1-201ENST00000254351 THRAP3Q9Y2W1 955 aaKnown RBP15.76■□□□□ 0.11
SDC1-201ENST00000254351 A8MUI8 341 aa15.76■□□□□ 0.11
SDC1-201ENST00000254351 KRIT1O00522 736 aa15.76■□□□□ 0.11
SDC1-201ENST00000254351 ATP6V1G2O95670 118 aa15.76■□□□□ 0.11
SDC1-201ENST00000254351 ELF3P78545 371 aaPredicted RBP15.76■□□□□ 0.11
SDC1-201ENST00000254351 ADCY1Q08828 1119 aa15.76■□□□□ 0.11
SDC1-201ENST00000254351 RPS6KA1Q15418 735 aa15.76■□□□□ 0.11
SDC1-201ENST00000254351 SLC9C1Q4G0N8 1177 aa15.76■□□□□ 0.11
SDC1-201ENST00000254351 WLSQ5T9L3 541 aa15.76■□□□□ 0.11
SDC1-201ENST00000254351 STX8Q9UNK0 236 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms