RNA–Protein interactions for RNA: ENST00000638016.1

PNKP-230, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 109 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-230ENST00000638016 MFSD5Q6N075 450 aa20.5■□□□□ 0.87
PNKP-230ENST00000638016 C16orf59Q7L2K0 433 aa20.5■□□□□ 0.87
PNKP-230ENST00000638016 RRP36Q96EU6 259 aaKnown RBP20.5■□□□□ 0.87
PNKP-230ENST00000638016 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.5■□□□□ 0.87
PNKP-230ENST00000638016 MTG1Q9BT17 334 aaPredicted RBP20.5■□□□□ 0.87
PNKP-230ENST00000638016 ALDH8A1Q9H2A2 487 aaPredicted RBP20.5■□□□□ 0.87
PNKP-230ENST00000638016 DDX41Q9UJV9 622 aaKnown RBP20.5■□□□□ 0.87
PNKP-230ENST00000638016 DOCK5Q9H7D0 1870 aa20.5■□□□□ 0.87
PNKP-230ENST00000638016 COL6A3P12111 3177 aa20.49■□□□□ 0.87
PNKP-230ENST00000638016 EIF3JO75822 258 aaKnown RBP20.49■□□□□ 0.87
PNKP-230ENST00000638016 GH1P01241 217 aa20.49■□□□□ 0.87
PNKP-230ENST00000638016 CYP2C9P11712 490 aa20.49■□□□□ 0.87
PNKP-230ENST00000638016 CCL23P55773 120 aa20.49■□□□□ 0.87
PNKP-230ENST00000638016 FAM47CQ5HY64 1035 aa20.49■□□□□ 0.87
PNKP-230ENST00000638016 USP17L6PQ6QN14 398 aa20.49■□□□□ 0.87
PNKP-230ENST00000638016 TMTC3Q6ZXV5 915 aa20.49■□□□□ 0.87
PNKP-230ENST00000638016 TMTC2Q8N394 836 aa20.49■□□□□ 0.87
PNKP-230ENST00000638016 RNPC3Q96LT9 517 aaKnown RBP20.49■□□□□ 0.87
PNKP-230ENST00000638016 FAM161BQ96MY7 647 aa20.49■□□□□ 0.87
PNKP-230ENST00000638016 WNT8AQ9H1J5 351 aa20.49■□□□□ 0.87
PNKP-230ENST00000638016 HIPK3Q9H422 1215 aa20.49■□□□□ 0.87
PNKP-230ENST00000638016 MRVI1Q9Y6F6 885 aa20.49■□□□□ 0.87
PNKP-230ENST00000638016 CDH23Q9H251 3354 aa20.48■□□□□ 0.87
PNKP-230ENST00000638016 NEFLP07196 543 aa20.48■□□□□ 0.87
PNKP-230ENST00000638016 APOA5Q6Q788 366 aa20.48■□□□□ 0.87
PNKP-230ENST00000638016 VSIG10LQ86VR7 867 aa20.48■□□□□ 0.87
PNKP-230ENST00000638016 SGMS1Q86VZ5 419 aa20.48■□□□□ 0.87
PNKP-230ENST00000638016 FANCBQ8NB91 859 aa20.48■□□□□ 0.87
PNKP-230ENST00000638016 NOC4LQ9BVI4 516 aaKnown RBP20.48■□□□□ 0.87
PNKP-230ENST00000638016 BCAS3Q9H6U6 928 aa20.48■□□□□ 0.87
PNKP-230ENST00000638016 MAP3K20Q9NYL2 800 aaKnown RBP20.48■□□□□ 0.87
PNKP-230ENST00000638016 SCN5AQ14524 2016 aa20.48■□□□□ 0.87
PNKP-230ENST00000638016 MRPS9P82933 396 aaKnown RBP20.47■□□□□ 0.87
PNKP-230ENST00000638016 SP2Q02086 613 aa20.47■□□□□ 0.87
PNKP-230ENST00000638016 TSGA10IPQ3SY00 556 aa20.47■□□□□ 0.87
PNKP-230ENST00000638016 FAM109BQ6ICB4 259 aaPredicted RBP20.47■□□□□ 0.87
PNKP-230ENST00000638016 DHX32Q7L7V1 743 aaKnown RBP20.47■□□□□ 0.87
PNKP-230ENST00000638016 KAT2BQ92831 832 aa20.47■□□□□ 0.87
PNKP-230ENST00000638016 SCLYQ96I15 445 aa20.47■□□□□ 0.87
PNKP-230ENST00000638016 SEC63Q9UGP8 760 aaKnown RBP20.47■□□□□ 0.87
PNKP-230ENST00000638016 CNTNAP5Q8WYK1 1306 aa20.47■□□□□ 0.87
PNKP-230ENST00000638016 MEIS2O14770 477 aa20.46■□□□□ 0.87
PNKP-230ENST00000638016 ZNF286BP0CG31 522 aa20.46■□□□□ 0.87
PNKP-230ENST00000638016 CALM1P0DP23 149 aa20.46■□□□□ 0.87
PNKP-230ENST00000638016 CALM2P0DP24 149 aa20.46■□□□□ 0.87
PNKP-230ENST00000638016 CALM3P0DP25 149 aa20.46■□□□□ 0.87
PNKP-230ENST00000638016 SMARCA1P28370 1054 aa20.46■□□□□ 0.87
PNKP-230ENST00000638016 CCND2P30279 289 aa20.46■□□□□ 0.87
PNKP-230ENST00000638016 GNAQP50148 359 aa20.46■□□□□ 0.87
PNKP-230ENST00000638016 BRDTQ58F21 947 aaPredicted RBP20.46■□□□□ 0.87
PNKP-230ENST00000638016 TMEM240Q5SV17 173 aa20.46■□□□□ 0.87
PNKP-230ENST00000638016 GPR153Q6NV75 609 aa20.46■□□□□ 0.87
PNKP-230ENST00000638016 LZTS2Q9BRK4 669 aa20.46■□□□□ 0.87
PNKP-230ENST00000638016 MTMR10Q9NXD2 777 aa20.46■□□□□ 0.87
PNKP-230ENST00000638016 RTEL1Q9NZ71 1219 aa20.46■□□□□ 0.87
PNKP-230ENST00000638016 SNX14Q9Y5W7 946 aa20.46■□□□□ 0.87
PNKP-230ENST00000638016 FRMPD4Q14CM0 1322 aa20.46■□□□□ 0.87
PNKP-230ENST00000638016 UBA1P22314 1058 aaKnown RBP20.45■□□□□ 0.86
PNKP-230ENST00000638016 HSPA4P34932 840 aa20.45■□□□□ 0.86
PNKP-230ENST00000638016 TRAF1Q13077 416 aa20.45■□□□□ 0.86
PNKP-230ENST00000638016 SEMA3FQ13275 785 aa20.45■□□□□ 0.86
PNKP-230ENST00000638016 PPIGQ13427 754 aaKnown RBP eCLIP20.45■□□□□ 0.869e-9■■■■■ 34
PNKP-230ENST00000638016 UBE2SQ16763 222 aa20.45■□□□□ 0.86
PNKP-230ENST00000638016 ZNF365Q70YC5 407 aa20.45■□□□□ 0.86
PNKP-230ENST00000638016 TMEM199Q8N511 208 aa20.45■□□□□ 0.86
PNKP-230ENST00000638016 SAMD3Q8N6K7 520 aa20.45■□□□□ 0.86
PNKP-230ENST00000638016 KCNB2Q92953 911 aa20.45■□□□□ 0.86
PNKP-230ENST00000638016 VWCEQ96DN2 955 aa20.45■□□□□ 0.86
PNKP-230ENST00000638016 TELO2Q9Y4R8 837 aa20.45■□□□□ 0.86
PNKP-230ENST00000638016 KLF18A0A0U1RQI7 1052 aa20.44■□□□□ 0.86
PNKP-230ENST00000638016 GGPS1O95749 300 aa20.44■□□□□ 0.86
PNKP-230ENST00000638016 CDC27P30260 824 aa20.44■□□□□ 0.86
PNKP-230ENST00000638016 HSDL1Q3SXM5 330 aa20.44■□□□□ 0.86
PNKP-230ENST00000638016 TYW1BQ6NUM6 668 aa20.44■□□□□ 0.86
PNKP-230ENST00000638016 DHX37Q8IY37 1157 aaKnown RBP20.44■□□□□ 0.86
PNKP-230ENST00000638016 SMARCC2Q8TAQ2 1214 aa20.44■□□□□ 0.86
PNKP-230ENST00000638016 JAKMIP1Q96N16 626 aaKnown RBP20.44■□□□□ 0.86
PNKP-230ENST00000638016 FAM217BQ9NTX9 383 aaPredicted RBP20.44■□□□□ 0.86
PNKP-230ENST00000638016 TRIP12Q14669 1992 aaPredicted RBP20.44■□□□□ 0.86
PNKP-230ENST00000638016 GRXCR1A8MXD5 290 aa20.43■□□□□ 0.86
PNKP-230ENST00000638016 ZBTB43O43298 467 aa20.43■□□□□ 0.86
PNKP-230ENST00000638016 KPNA6O60684 536 aa20.43■□□□□ 0.86
PNKP-230ENST00000638016 FUT2Q10981 343 aa20.43■□□□□ 0.86
PNKP-230ENST00000638016 KRT32Q14532 448 aa20.43■□□□□ 0.86
PNKP-230ENST00000638016 RTN1Q16799 776 aa20.43■□□□□ 0.86
PNKP-230ENST00000638016 MYSM1Q5VVJ2 828 aa20.43■□□□□ 0.86
PNKP-230ENST00000638016 WWC2Q6AWC2 1192 aa20.43■□□□□ 0.86
PNKP-230ENST00000638016 NFRKBQ6P4R8 1299 aa20.43■□□□□ 0.86
PNKP-230ENST00000638016 HEATR3Q7Z4Q2 680 aa20.43■□□□□ 0.86
PNKP-230ENST00000638016 EMID1Q96A84 441 aaPredicted RBP20.43■□□□□ 0.86
PNKP-230ENST00000638016 GUCD1Q96NT3 240 aa20.43■□□□□ 0.86
PNKP-230ENST00000638016 CTAGE1Q96RT6 745 aa20.43■□□□□ 0.86
PNKP-230ENST00000638016 NAP1L2Q9ULW6 460 aaPredicted RBP20.43■□□□□ 0.86
PNKP-230ENST00000638016 TANC1Q9C0D5 1861 aa20.42■□□□□ 0.86
PNKP-230ENST00000638016 GOLGA8AA7E2F4 631 aa20.42■□□□□ 0.86
PNKP-230ENST00000638016 GOLGA8BA8MQT2 603 aa20.42■□□□□ 0.86
PNKP-230ENST00000638016 APOBRQ0VD83 1088 aa20.42■□□□□ 0.86
PNKP-230ENST00000638016 CELF3Q5SZQ8 465 aaKnown RBP20.42■□□□□ 0.86
PNKP-230ENST00000638016 GDF6Q6KF10 455 aaPredicted RBP20.42■□□□□ 0.86
PNKP-230ENST00000638016 SYNE3Q6ZMZ3 975 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms