RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 ARVCFO00192 962 aa18.67■□□□□ 0.58
TRIM28-206ENST00000595974 EIF5BO60841 1220 aaKnown RBP18.67■□□□□ 0.58
TRIM28-206ENST00000595974 MYCLP12524 364 aaPredicted RBP18.67■□□□□ 0.58
TRIM28-206ENST00000595974 CDK7P50613 346 aa18.67■□□□□ 0.58
TRIM28-206ENST00000595974 RUFY3Q7L099 469 aa18.67■□□□□ 0.58
TRIM28-206ENST00000595974 HEATR3Q7Z4Q2 680 aa18.67■□□□□ 0.58
TRIM28-206ENST00000595974 VSIG10LQ86VR7 867 aa18.67■□□□□ 0.58
TRIM28-206ENST00000595974 ZNF713Q8N859 430 aaPredicted RBP18.67■□□□□ 0.58
TRIM28-206ENST00000595974 IL31RAQ8NI17 732 aa18.67■□□□□ 0.58
TRIM28-206ENST00000595974 SMARCC2Q8TAQ2 1214 aa18.67■□□□□ 0.58
TRIM28-206ENST00000595974 COPS5Q92905 334 aa18.67■□□□□ 0.58
TRIM28-206ENST00000595974 ZSWIM6Q9HCJ5 1215 aa18.67■□□□□ 0.58
TRIM28-206ENST00000595974 FAM217BQ9NTX9 383 aaPredicted RBP18.67■□□□□ 0.58
TRIM28-206ENST00000595974 A6NJR5 290 aa18.66■□□□□ 0.58
TRIM28-206ENST00000595974 MEIS2O14770 477 aa18.66■□□□□ 0.58
TRIM28-206ENST00000595974 GH1P01241 217 aa18.66■□□□□ 0.58
TRIM28-206ENST00000595974 CDC27P30260 824 aa18.66■□□□□ 0.58
TRIM28-206ENST00000595974 PPP1R18Q6NYC8 613 aa18.66■□□□□ 0.58
TRIM28-206ENST00000595974 KCNV1Q6PIU1 500 aa18.66■□□□□ 0.58
TRIM28-206ENST00000595974 TEX2Q8IWB9 1127 aa18.66■□□□□ 0.58
TRIM28-206ENST00000595974 PSTPIP2Q9H939 334 aa18.66■□□□□ 0.58
TRIM28-206ENST00000595974 CYP46A1Q9Y6A2 500 aa18.66■□□□□ 0.58
TRIM28-206ENST00000595974 MRVI1Q9Y6F6 885 aa18.66■□□□□ 0.58
TRIM28-206ENST00000595974 LAMA3Q16787 3333 aa18.66■□□□□ 0.58
TRIM28-206ENST00000595974 KIAA0355O15063 1070 aa18.65■□□□□ 0.58
TRIM28-206ENST00000595974 KPNA6O60684 536 aa18.65■□□□□ 0.58
TRIM28-206ENST00000595974 STAM2O75886 525 aa18.65■□□□□ 0.58
TRIM28-206ENST00000595974 PURAQ00577 322 aaKnown RBP18.65■□□□□ 0.58
TRIM28-206ENST00000595974 MDM2Q00987 491 aaPredicted RBP18.65■□□□□ 0.58
TRIM28-206ENST00000595974 FAAP100Q0VG06 881 aa18.65■□□□□ 0.58
TRIM28-206ENST00000595974 ITGA7Q13683 1181 aa18.65■□□□□ 0.58
TRIM28-206ENST00000595974 LY6KQ17RY6 165 aa18.65■□□□□ 0.58
TRIM28-206ENST00000595974 WWC2Q6AWC2 1192 aa18.65■□□□□ 0.58
TRIM28-206ENST00000595974 USP17L6PQ6QN14 398 aa18.65■□□□□ 0.58
TRIM28-206ENST00000595974 SH3RF1Q7Z6J0 888 aa18.65■□□□□ 0.58
TRIM28-206ENST00000595974 SLC43A3Q8NBI5 491 aa18.65■□□□□ 0.58
TRIM28-206ENST00000595974 GPKOWQ92917 476 aaPredicted RBP eCLIP18.65■□□□□ 0.58
TRIM28-206ENST00000595974 EMID1Q96A84 441 aaPredicted RBP18.65■□□□□ 0.58
TRIM28-206ENST00000595974 UBE2OQ9C0C9 1292 aaKnown RBP18.65■□□□□ 0.58
TRIM28-206ENST00000595974 DDX41Q9UJV9 622 aaKnown RBP18.65■□□□□ 0.58
TRIM28-206ENST00000595974 DOCK5Q9H7D0 1870 aa18.65■□□□□ 0.58
TRIM28-206ENST00000595974 TRIM43BA6NCK2 446 aa18.64■□□□□ 0.57
TRIM28-206ENST00000595974 TLR3O15455 904 aaKnown RBP18.64■□□□□ 0.57
TRIM28-206ENST00000595974 RGS20O76081 388 aa18.64■□□□□ 0.57
TRIM28-206ENST00000595974 EVCP57679 992 aa18.64■□□□□ 0.57
TRIM28-206ENST00000595974 ARHGAP1Q07960 439 aa18.64■□□□□ 0.57
TRIM28-206ENST00000595974 GNPTABQ3T906 1256 aa18.64■□□□□ 0.57
TRIM28-206ENST00000595974 XRRA1Q6P2D8 792 aa18.64■□□□□ 0.57
TRIM28-206ENST00000595974 FAM126BQ8IXS8 530 aa18.64■□□□□ 0.57
TRIM28-206ENST00000595974 TRIM43Q96BQ3 446 aaPredicted RBP18.64■□□□□ 0.57
TRIM28-206ENST00000595974 MTG1Q9BT17 334 aaPredicted RBP18.64■□□□□ 0.57
TRIM28-206ENST00000595974 TMEM39AQ9NV64 488 aa18.64■□□□□ 0.57
TRIM28-206ENST00000595974 MYL3P08590 195 aa18.63■□□□□ 0.57
TRIM28-206ENST00000595974 TGFB3P10600 412 aa18.63■□□□□ 0.57
TRIM28-206ENST00000595974 ADD1P35611 737 aaKnown RBP18.63■□□□□ 0.57
TRIM28-206ENST00000595974 FXR1P51114 621 aaKnown RBP eCLIP18.63■□□□□ 0.573e-6■■■□□ 16.1
TRIM28-206ENST00000595974 NAPAP54920 295 aa18.63■□□□□ 0.57
TRIM28-206ENST00000595974 TOB2Q14106 344 aaPredicted RBP18.63■□□□□ 0.57
TRIM28-206ENST00000595974 PCNX4Q63HM2 1172 aa18.63■□□□□ 0.57
TRIM28-206ENST00000595974 INPP4AQ96PE3 977 aaPredicted RBP18.63■□□□□ 0.57
TRIM28-206ENST00000595974 TBX21Q9UL17 535 aa18.63■□□□□ 0.57
TRIM28-206ENST00000595974 V9GY48 417 aaPredicted RBP18.63■□□□□ 0.57
TRIM28-206ENST00000595974 MMP3P08254 477 aa18.62■□□□□ 0.57
TRIM28-206ENST00000595974 RAG1P15918 1043 aa18.62■□□□□ 0.57
TRIM28-206ENST00000595974 ANAPC15P60006 121 aa18.62■□□□□ 0.57
TRIM28-206ENST00000595974 PSMC6P62333 389 aa18.62■□□□□ 0.57
TRIM28-206ENST00000595974 MRPS9P82933 396 aaKnown RBP18.62■□□□□ 0.57
TRIM28-206ENST00000595974 LAMC2Q13753 1193 aa18.62■□□□□ 0.57
TRIM28-206ENST00000595974 TDHQ8IZJ6 230 aa18.62■□□□□ 0.57
TRIM28-206ENST00000595974 AFG1LQ8WV93 481 aa18.62■□□□□ 0.57
TRIM28-206ENST00000595974 UPF3BQ9BZI7 483 aaKnown RBP18.62■□□□□ 0.57
TRIM28-206ENST00000595974 BARHL2Q9NY43 387 aa18.62■□□□□ 0.57
TRIM28-206ENST00000595974 PCDH10Q9P2E7 1040 aa18.62■□□□□ 0.57
TRIM28-206ENST00000595974 GRIN2DO15399 1336 aa18.62■□□□□ 0.57
TRIM28-206ENST00000595974 SPDYE3A6NKU9 549 aa18.61■□□□□ 0.57
TRIM28-206ENST00000595974 STXBP3O00186 592 aa18.61■□□□□ 0.57
TRIM28-206ENST00000595974 CD4P01730 458 aa18.61■□□□□ 0.57
TRIM28-206ENST00000595974 PDIA3P30101 505 aaKnown RBP18.61■□□□□ 0.57
TRIM28-206ENST00000595974 ICAM3P32942 547 aa18.61■□□□□ 0.57
TRIM28-206ENST00000595974 UBE2SQ16763 222 aa18.61■□□□□ 0.57
TRIM28-206ENST00000595974 PFKFB3Q16875 520 aaPredicted RBP18.61■□□□□ 0.57
TRIM28-206ENST00000595974 TYW1BQ6NUM6 668 aa18.61■□□□□ 0.57
TRIM28-206ENST00000595974 DHX37Q8IY37 1157 aaKnown RBP18.61■□□□□ 0.57
TRIM28-206ENST00000595974 PPTC7Q8NI37 304 aa18.61■□□□□ 0.57
TRIM28-206ENST00000595974 BADQ92934 168 aa18.61■□□□□ 0.57
TRIM28-206ENST00000595974 GLT8D2Q9H1C3 349 aa18.61■□□□□ 0.57
TRIM28-206ENST00000595974 EHMT1Q9H9B1 1298 aa18.61■□□□□ 0.57
TRIM28-206ENST00000595974 RIC8AQ9NPQ8 531 aa18.61■□□□□ 0.57
TRIM28-206ENST00000595974 FIBPO43427 364 aa18.6■□□□□ 0.57
TRIM28-206ENST00000595974 SCG2P13521 617 aa18.6■□□□□ 0.57
TRIM28-206ENST00000595974 UBA1P22314 1058 aaKnown RBP18.6■□□□□ 0.57
TRIM28-206ENST00000595974 ADCY7P51828 1080 aa18.6■□□□□ 0.57
TRIM28-206ENST00000595974 DGKDQ16760 1214 aa18.6■□□□□ 0.57
TRIM28-206ENST00000595974 RNF26Q9BY78 433 aaPredicted RBP18.6■□□□□ 0.57
TRIM28-206ENST00000595974 PDRG1Q9NUG6 133 aa18.6■□□□□ 0.57
TRIM28-206ENST00000595974 PRPF3O43395 683 aaKnown RBP18.59■□□□□ 0.57
TRIM28-206ENST00000595974 GGPS1O95749 300 aa18.59■□□□□ 0.57
TRIM28-206ENST00000595974 IFNAR1P17181 557 aa18.59■□□□□ 0.57
TRIM28-206ENST00000595974 ITGB8P26012 769 aa18.59■□□□□ 0.57
TRIM28-206ENST00000595974 AKAP17AQ02040 695 aaKnown RBP18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms