RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 ZIM3Q96PE6 472 aa19.42■□□□□ 0.7
SYNE3-202ENST00000553340 SMCO2A6NFE2 343 aa19.41■□□□□ 0.7
SYNE3-202ENST00000553340 KLRF2D3W0D1 207 aa19.41■□□□□ 0.7
SYNE3-202ENST00000553340 ITPK1Q13572 414 aa19.41■□□□□ 0.7
SYNE3-202ENST00000553340 PDXDC1Q6P996 788 aa19.41■□□□□ 0.7
SYNE3-202ENST00000553340 SUGP1Q8IWZ8 645 aaKnown RBP19.41■□□□□ 0.7
SYNE3-202ENST00000553340 STK17AQ9UEE5 414 aa19.41■□□□□ 0.7
SYNE3-202ENST00000553340 DOT1LQ8TEK3 1739 aa19.41■□□□□ 0.7
SYNE3-202ENST00000553340 BUB1O43683 1085 aa19.41■□□□□ 0.7
SYNE3-202ENST00000553340 GOLGA8HP0CJ92 632 aa19.41■□□□□ 0.7
SYNE3-202ENST00000553340 APBA1Q02410 837 aa19.41■□□□□ 0.7
SYNE3-202ENST00000553340 POTEDQ86YR6 584 aa19.41■□□□□ 0.7
SYNE3-202ENST00000553340 TMEM47Q9BQJ4 181 aa19.41■□□□□ 0.7
SYNE3-202ENST00000553340 SPZ1Q9BXG8 430 aa19.41■□□□□ 0.7
SYNE3-202ENST00000553340 MYMKA6NI61 221 aa19.4■□□□□ 0.7
SYNE3-202ENST00000553340 SLC1A4P43007 532 aa19.4■□□□□ 0.7
SYNE3-202ENST00000553340 ORC2Q13416 577 aaPredicted RBP19.4■□□□□ 0.7
SYNE3-202ENST00000553340 CLEC4GQ6UXB4 293 aa19.4■□□□□ 0.7
SYNE3-202ENST00000553340 GPIHBP1Q8IV16 184 aa19.4■□□□□ 0.7
SYNE3-202ENST00000553340 NDUFAB1O14561 156 aa19.4■□□□□ 0.7
SYNE3-202ENST00000553340 GUCY2CP25092 1073 aa19.4■□□□□ 0.7
SYNE3-202ENST00000553340 TDRD12Q587J7 1177 aaKnown RBP19.4■□□□□ 0.7
SYNE3-202ENST00000553340 CFAP58Q5T655 872 aa19.4■□□□□ 0.7
SYNE3-202ENST00000553340 SOGA3Q5TF21 947 aa19.4■□□□□ 0.7
SYNE3-202ENST00000553340 SPTY2D1Q68D10 685 aaPredicted RBP19.4■□□□□ 0.7
SYNE3-202ENST00000553340 B4GALNT4Q76KP1 1039 aa19.4■□□□□ 0.7
SYNE3-202ENST00000553340 GDF3Q9NR23 364 aa19.4■□□□□ 0.7
SYNE3-202ENST00000553340 BLOC1S4Q9NUP1 217 aa19.4■□□□□ 0.7
SYNE3-202ENST00000553340 CLSTN1O94985 981 aa19.39■□□□□ 0.7
SYNE3-202ENST00000553340 INPP5BP32019 993 aa19.39■□□□□ 0.7
SYNE3-202ENST00000553340 TXKP42681 527 aa19.39■□□□□ 0.7
SYNE3-202ENST00000553340 PAK2Q13177 524 aa19.39■□□□□ 0.7
SYNE3-202ENST00000553340 GRB10Q13322 594 aa19.39■□□□□ 0.7
SYNE3-202ENST00000553340 ARHGAP27Q6ZUM4 889 aa19.39■□□□□ 0.7
SYNE3-202ENST00000553340 DYMQ7RTS9 669 aa19.39■□□□□ 0.7
SYNE3-202ENST00000553340 TBCKQ8TEA7 893 aa19.39■□□□□ 0.7
SYNE3-202ENST00000553340 LARP4BQ92615 738 aaKnown RBP19.39■□□□□ 0.7
SYNE3-202ENST00000553340 MS4A14Q96JA4 679 aa19.39■□□□□ 0.7
SYNE3-202ENST00000553340 CDK5RAP3Q96JB5 506 aa19.39■□□□□ 0.7
SYNE3-202ENST00000553340 TANGO6Q9C0B7 1094 aa19.39■□□□□ 0.7
SYNE3-202ENST00000553340 LUC7LQ9NQ29 371 aaKnown RBP19.39■□□□□ 0.7
SYNE3-202ENST00000553340 CCDC88AQ3V6T2 1871 aa19.39■□□□□ 0.7
SYNE3-202ENST00000553340 ATP2B2Q01814 1243 aa19.39■□□□□ 0.69
SYNE3-202ENST00000553340 PDCLQ13371 301 aa19.39■□□□□ 0.69
SYNE3-202ENST00000553340 SLC9C1Q4G0N8 1177 aa19.39■□□□□ 0.69
SYNE3-202ENST00000553340 TSG101Q99816 390 aa19.39■□□□□ 0.69
SYNE3-202ENST00000553340 NUCKS1Q9H1E3 243 aaKnown RBP19.39■□□□□ 0.69
SYNE3-202ENST00000553340 ROBO3Q96MS0 1386 aa19.39■□□□□ 0.69
SYNE3-202ENST00000553340 MYH14Q7Z406 1995 aaKnown RBP19.39■□□□□ 0.69
SYNE3-202ENST00000553340 RBAK-RBAKDNI3L0D1 243 aa19.38■□□□□ 0.69
SYNE3-202ENST00000553340 HEXIM1O94992 359 aaKnown RBP19.38■□□□□ 0.69
SYNE3-202ENST00000553340 KRT14P02533 472 aa19.38■□□□□ 0.69
SYNE3-202ENST00000553340 GLI1P08151 1106 aa19.38■□□□□ 0.69
SYNE3-202ENST00000553340 HOXA7P31268 230 aaPredicted RBP19.38■□□□□ 0.69
SYNE3-202ENST00000553340 RPS8P62241 208 aaKnown RBP19.38■□□□□ 0.69
SYNE3-202ENST00000553340 HGSNATQ68CP4 663 aa19.38■□□□□ 0.69
SYNE3-202ENST00000553340 LRRC55Q6ZSA7 311 aa19.38■□□□□ 0.69
SYNE3-202ENST00000553340 IQCKQ8N0W5 287 aa19.38■□□□□ 0.69
SYNE3-202ENST00000553340 CCDC43Q96MW1 224 aaKnown RBP19.38■□□□□ 0.69
SYNE3-202ENST00000553340 EPB41L5Q9HCM4 733 aa19.38■□□□□ 0.69
SYNE3-202ENST00000553340 NFU1Q9UMS0 254 aa19.38■□□□□ 0.69
SYNE3-202ENST00000553340 JAG2Q9Y219 1238 aa19.38■□□□□ 0.69
SYNE3-202ENST00000553340 SAMM50Q9Y512 469 aa19.38■□□□□ 0.69
SYNE3-202ENST00000553340 MAST2Q6P0Q8 1798 aa19.38■□□□□ 0.69
SYNE3-202ENST00000553340 CARSP49589 748 aaKnown RBP19.38■□□□□ 0.69
SYNE3-202ENST00000553340 KCTD16Q68DU8 428 aa19.38■□□□□ 0.69
SYNE3-202ENST00000553340 ANKRD2Q9GZV1 360 aa19.38■□□□□ 0.69
SYNE3-202ENST00000553340 CPVLQ9H3G5 476 aa19.38■□□□□ 0.69
SYNE3-202ENST00000553340 SH2D3CQ8N5H7 860 aa19.38■□□□□ 0.69
SYNE3-202ENST00000553340 IFT81Q8WYA0 676 aa19.38■□□□□ 0.69
SYNE3-202ENST00000553340 YY1AP1Q9H869 796 aa19.38■□□□□ 0.69
SYNE3-202ENST00000553340 RIC8AQ9NPQ8 531 aa19.38■□□□□ 0.69
SYNE3-202ENST00000553340 SEC63Q9UGP8 760 aaKnown RBP19.38■□□□□ 0.69
SYNE3-202ENST00000553340 ATP1A2P50993 1020 aa19.37■□□□□ 0.69
SYNE3-202ENST00000553340 GUCY2DQ02846 1103 aa19.37■□□□□ 0.69
SYNE3-202ENST00000553340 TMEM266Q2M3C6 531 aa19.37■□□□□ 0.69
SYNE3-202ENST00000553340 KDM7AQ6ZMT4 941 aa19.37■□□□□ 0.69
SYNE3-202ENST00000553340 SPATS2Q86XZ4 545 aaKnown RBP19.37■□□□□ 0.69
SYNE3-202ENST00000553340 PNMA5Q96PV4 448 aa19.37■□□□□ 0.69
SYNE3-202ENST00000553340 CEP72Q9P209 647 aa19.37■□□□□ 0.69
SYNE3-202ENST00000553340 GRID2IPA4D2P6 1211 aa19.37■□□□□ 0.69
SYNE3-202ENST00000553340 SERPING1P05155 500 aa19.37■□□□□ 0.69
SYNE3-202ENST00000553340 ERCC3P19447 782 aa19.37■□□□□ 0.69
SYNE3-202ENST00000553340 PSMD2Q13200 908 aa19.37■□□□□ 0.69
SYNE3-202ENST00000553340 CALCRLQ16602 461 aa19.37■□□□□ 0.69
SYNE3-202ENST00000553340 SFMBT2Q5VUG0 894 aa19.37■□□□□ 0.69
SYNE3-202ENST00000553340 REXO1Q8N1G1 1221 aaKnown RBP19.37■□□□□ 0.69
SYNE3-202ENST00000553340 MREGQ8N565 214 aa19.37■□□□□ 0.69
SYNE3-202ENST00000553340 SYN2Q92777 582 aaPredicted RBP19.37■□□□□ 0.69
SYNE3-202ENST00000553340 KAT2BQ92831 832 aa19.37■□□□□ 0.69
SYNE3-202ENST00000553340 ACSBG1Q96GR2 724 aa19.37■□□□□ 0.69
SYNE3-202ENST00000553340 LRRC27Q9C0I9 530 aa19.37■□□□□ 0.69
SYNE3-202ENST00000553340 NLRC4Q9NPP4 1024 aa19.37■□□□□ 0.69
SYNE3-202ENST00000553340 ATXN2Q99700 1313 aaKnown RBP19.36■□□□□ 0.69
SYNE3-202ENST00000553340 PALMO75781 387 aa19.36■□□□□ 0.69
SYNE3-202ENST00000553340 FXR2P51116 673 aaKnown RBP eCLIP19.36■□□□□ 0.69
SYNE3-202ENST00000553340 KCNMA1Q12791 1236 aa19.36■□□□□ 0.69
SYNE3-202ENST00000553340 FOXR2Q6PJQ5 311 aa19.36■□□□□ 0.69
SYNE3-202ENST00000553340 PROM2Q8N271 834 aa19.36■□□□□ 0.69
SYNE3-202ENST00000553340 SLC44A5Q8NCS7 719 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms