RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 EMSYQ7Z589 1322 aa19.82■□□□□ 0.76
VPS29-204ENST00000548259 LINC01553A4QN01 128 aa19.82■□□□□ 0.76
VPS29-204ENST00000548259 ARIH2O95376 493 aa19.82■□□□□ 0.76
VPS29-204ENST00000548259 KCNA5P22460 613 aa19.82■□□□□ 0.76
VPS29-204ENST00000548259 PTK7Q13308 1070 aa19.82■□□□□ 0.76
VPS29-204ENST00000548259 FAM178BQ8IXR5 827 aa19.82■□□□□ 0.76
VPS29-204ENST00000548259 FBXO22Q8NEZ5 403 aa19.82■□□□□ 0.76
VPS29-204ENST00000548259 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP19.81■□□□□ 0.76
VPS29-204ENST00000548259 AMHP03971 560 aa19.81■□□□□ 0.76
VPS29-204ENST00000548259 ARHGAP1Q07960 439 aa19.81■□□□□ 0.76
VPS29-204ENST00000548259 LAMC2Q13753 1193 aa19.81■□□□□ 0.76
VPS29-204ENST00000548259 LY6KQ17RY6 165 aa19.81■□□□□ 0.76
VPS29-204ENST00000548259 C20orf194Q5TEA3 1177 aa19.81■□□□□ 0.76
VPS29-204ENST00000548259 EVI5LQ96CN4 794 aa19.81■□□□□ 0.76
VPS29-204ENST00000548259 C11orf16Q9NQ32 467 aa19.81■□□□□ 0.76
VPS29-204ENST00000548259 SCN5AQ14524 2016 aa19.81■□□□□ 0.76
VPS29-204ENST00000548259 ABCB11O95342 1321 aa19.8■□□□□ 0.76
VPS29-204ENST00000548259 TANC1Q9C0D5 1861 aa19.8■□□□□ 0.76
VPS29-204ENST00000548259 FOXP2O15409 715 aa19.8■□□□□ 0.76
VPS29-204ENST00000548259 NBNO60934 754 aa19.8■□□□□ 0.76
VPS29-204ENST00000548259 PSEN2P49810 448 aa19.8■□□□□ 0.76
VPS29-204ENST00000548259 VPS53Q5VIR6 699 aa19.8■□□□□ 0.76
VPS29-204ENST00000548259 PTCRAQ6ISU1 281 aaPredicted RBP19.8■□□□□ 0.76
VPS29-204ENST00000548259 FAM117BQ6P1L5 589 aa19.8■□□□□ 0.76
VPS29-204ENST00000548259 MFSD6Q6ZSS7 791 aa19.8■□□□□ 0.76
VPS29-204ENST00000548259 SPRED2Q7Z698 418 aa19.8■□□□□ 0.76
VPS29-204ENST00000548259 TMCO2Q7Z6W1 182 aaPredicted RBP19.8■□□□□ 0.76
VPS29-204ENST00000548259 KHSRPQ92945 711 aaKnown RBP eCLIP19.8■□□□□ 0.766e-11■□□□□ 11.2
VPS29-204ENST00000548259 EMID1Q96A84 441 aaPredicted RBP19.8■□□□□ 0.76
VPS29-204ENST00000548259 SAMD11Q96NU1 681 aa19.8■□□□□ 0.76
VPS29-204ENST00000548259 UIMC1Q96RL1 719 aa19.8■□□□□ 0.76
VPS29-204ENST00000548259 RMDN3Q96TC7 470 aa19.8■□□□□ 0.76
VPS29-204ENST00000548259 RNF41Q9H4P4 317 aaPredicted RBP19.8■□□□□ 0.76
VPS29-204ENST00000548259 HDAC6Q9UBN7 1215 aa19.8■□□□□ 0.76
VPS29-204ENST00000548259 EIF3JO75822 258 aaKnown RBP19.79■□□□□ 0.76
VPS29-204ENST00000548259 FGAP02671 866 aa19.79■□□□□ 0.76
VPS29-204ENST00000548259 SNHG28P0DPA3 235 aa19.79■□□□□ 0.76
VPS29-204ENST00000548259 NT5C2P49902 561 aa19.79■□□□□ 0.76
VPS29-204ENST00000548259 GPNMBQ14956 572 aa19.79■□□□□ 0.76
VPS29-204ENST00000548259 TIGD5Q53EQ6 642 aa19.79■□□□□ 0.76
VPS29-204ENST00000548259 CCDC178Q5BJE1 867 aa19.79■□□□□ 0.76
VPS29-204ENST00000548259 ARHGEF16Q5VV41 709 aa19.79■□□□□ 0.76
VPS29-204ENST00000548259 TICAM2Q86XR7 235 aa19.79■□□□□ 0.76
VPS29-204ENST00000548259 DHX37Q8IY37 1157 aaKnown RBP19.79■□□□□ 0.76
VPS29-204ENST00000548259 DHX38Q92620 1227 aaKnown RBP19.79■□□□□ 0.76
VPS29-204ENST00000548259 ESR2Q92731 530 aa19.79■□□□□ 0.76
VPS29-204ENST00000548259 KAT2BQ92831 832 aa19.79■□□□□ 0.76
VPS29-204ENST00000548259 ALG1Q9BT22 464 aa19.79■□□□□ 0.76
VPS29-204ENST00000548259 MRVI1Q9Y6F6 885 aa19.79■□□□□ 0.76
VPS29-204ENST00000548259 LGR5O75473 907 aa19.78■□□□□ 0.76
VPS29-204ENST00000548259 MFSD10Q14728 455 aa19.78■□□□□ 0.76
VPS29-204ENST00000548259 MCMDC2Q4G0Z9 681 aa19.78■□□□□ 0.76
VPS29-204ENST00000548259 PPTC7Q8NI37 304 aa19.78■□□□□ 0.76
VPS29-204ENST00000548259 SYTL5Q8TDW5 730 aaPredicted RBP19.78■□□□□ 0.76
VPS29-204ENST00000548259 MRPL38Q96DV4 380 aaKnown RBP19.78■□□□□ 0.76
VPS29-204ENST00000548259 CTAGE1Q96RT6 745 aa19.78■□□□□ 0.76
VPS29-204ENST00000548259 CD320Q9NPF0 282 aa19.78■□□□□ 0.76
VPS29-204ENST00000548259 MRPL11Q9Y3B7 192 aaKnown RBP19.78■□□□□ 0.76
VPS29-204ENST00000548259 LCTP09848 1927 aa19.78■□□□□ 0.76
VPS29-204ENST00000548259 ZMYM6O95789 1325 aa19.77■□□□□ 0.76
VPS29-204ENST00000548259 F2P00734 622 aa19.77■□□□□ 0.76
VPS29-204ENST00000548259 KIAA0753Q2KHM9 967 aa19.77■□□□□ 0.76
VPS29-204ENST00000548259 KCNV1Q6PIU1 500 aa19.77■□□□□ 0.76
VPS29-204ENST00000548259 GADD45GIP1Q8TAE8 222 aaPredicted RBP19.77■□□□□ 0.76
VPS29-204ENST00000548259 TAAR1Q96RJ0 339 aa19.77■□□□□ 0.76
VPS29-204ENST00000548259 DDX41Q9UJV9 622 aaKnown RBP19.77■□□□□ 0.76
VPS29-204ENST00000548259 MUC6Q6W4X9 2439 aa19.76■□□□□ 0.75
VPS29-204ENST00000548259 DHX16O60231 1041 aaKnown RBP19.76■□□□□ 0.75
VPS29-204ENST00000548259 PPFIA4O75335 1185 aa19.76■□□□□ 0.75
VPS29-204ENST00000548259 MFAP1P55081 439 aaKnown RBP19.76■□□□□ 0.75
VPS29-204ENST00000548259 CDC37Q16543 378 aaPredicted RBP19.76■□□□□ 0.75
VPS29-204ENST00000548259 ZNF618Q5T7W0 954 aa19.76■□□□□ 0.75
VPS29-204ENST00000548259 ALYREFQ86V81 257 aaKnown RBP19.76■□□□□ 0.75
VPS29-204ENST00000548259 IQCA1Q86XH1 822 aa19.76■□□□□ 0.75
VPS29-204ENST00000548259 DGKHQ86XP1 1220 aa19.76■□□□□ 0.75
VPS29-204ENST00000548259 MYOCDQ8IZQ8 938 aa19.76■□□□□ 0.75
VPS29-204ENST00000548259 OTUD7AQ8TE49 926 aaPredicted RBP19.76■□□□□ 0.75
VPS29-204ENST00000548259 UBA5Q9GZZ9 404 aa19.76■□□□□ 0.75
VPS29-204ENST00000548259 GRXCR2A6NFK2 248 aa19.75■□□□□ 0.75
VPS29-204ENST00000548259 GOLGA8HP0CJ92 632 aa19.75■□□□□ 0.75
VPS29-204ENST00000548259 HSPD1P10809 573 aaKnown RBP19.75■□□□□ 0.75
VPS29-204ENST00000548259 YME1L1Q96TA2 773 aa19.75■□□□□ 0.75
VPS29-204ENST00000548259 UPF3BQ9BZI7 483 aaKnown RBP19.75■□□□□ 0.75
VPS29-204ENST00000548259 KCNH6Q9H252 994 aa19.75■□□□□ 0.75
VPS29-204ENST00000548259 KAT14Q9H8E8 782 aa19.75■□□□□ 0.75
VPS29-204ENST00000548259 RSPH10B2B2RC85 870 aa19.74■□□□□ 0.75
VPS29-204ENST00000548259 HAS3O00219 553 aa19.74■□□□□ 0.75
VPS29-204ENST00000548259 DCXO43602 365 aa19.74■□□□□ 0.75
VPS29-204ENST00000548259 NCK2O43639 380 aa19.74■□□□□ 0.75
VPS29-204ENST00000548259 RSPH10BP0C881 870 aa19.74■□□□□ 0.75
VPS29-204ENST00000548259 ZNF286BP0CG31 522 aa19.74■□□□□ 0.75
VPS29-204ENST00000548259 IL9P15248 144 aa19.74■□□□□ 0.75
VPS29-204ENST00000548259 EIF2AK2P19525 551 aaKnown RBP19.74■□□□□ 0.75
VPS29-204ENST00000548259 THPOP40225 353 aa19.74■□□□□ 0.75
VPS29-204ENST00000548259 HAND2P61296 217 aa19.74■□□□□ 0.75
VPS29-204ENST00000548259 ASPRV1Q53RT3 343 aa19.74■□□□□ 0.75
VPS29-204ENST00000548259 FBXO11Q86XK2 927 aa19.74■□□□□ 0.75
VPS29-204ENST00000548259 PNMA1Q8ND90 353 aa19.74■□□□□ 0.75
VPS29-204ENST00000548259 BANK1Q8NDB2 785 aa19.74■□□□□ 0.75
VPS29-204ENST00000548259 TET1Q8NFU7 2136 aa19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms