RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 CCDC155Q8N6L0 562 aa12.4□□□□□ -0.43
CUX1-212ENST00000547394 RAD54LQ92698 747 aa12.4□□□□□ -0.43
CUX1-212ENST00000547394 ZBTB9Q96C00 473 aa12.4□□□□□ -0.43
CUX1-212ENST00000547394 LIMA1Q9UHB6 759 aaKnown RBP12.4□□□□□ -0.43
CUX1-212ENST00000547394 hCG_1984214I3L0E3 225 aa12.39□□□□□ -0.43
CUX1-212ENST00000547394 URI1O94763 535 aaPredicted RBP12.39□□□□□ -0.43
CUX1-212ENST00000547394 GTF2F1P35269 517 aaKnown RBP eCLIP12.39□□□□□ -0.432e-8■■■□□ 18.7
CUX1-212ENST00000547394 FKBP1AP62942 108 aaKnown RBP12.39□□□□□ -0.43
CUX1-212ENST00000547394 ERVK-24P63145 666 aa12.39□□□□□ -0.43
CUX1-212ENST00000547394 RTKN2Q8IZC4 609 aa12.39□□□□□ -0.43
CUX1-212ENST00000547394 ZNF713Q8N859 430 aaPredicted RBP12.39□□□□□ -0.43
CUX1-212ENST00000547394 P2RX5Q93086 422 aa12.39□□□□□ -0.43
CUX1-212ENST00000547394 PKNOX2Q96KN3 472 aa12.39□□□□□ -0.43
CUX1-212ENST00000547394 CNOT6LQ96LI5 555 aaKnown RBP12.39□□□□□ -0.43
CUX1-212ENST00000547394 PCMTD1Q96MG8 357 aaPredicted RBP12.39□□□□□ -0.43
CUX1-212ENST00000547394 C7orf25Q9BPX7 421 aa12.39□□□□□ -0.43
CUX1-212ENST00000547394 EPC1Q9H2F5 836 aa12.39□□□□□ -0.43
CUX1-212ENST00000547394 HOMER2Q9NSB8 354 aa12.39□□□□□ -0.43
CUX1-212ENST00000547394 BCS1LQ9Y276 419 aa12.39□□□□□ -0.43
CUX1-212ENST00000547394 GJA3Q9Y6H8 435 aa12.39□□□□□ -0.43
CUX1-212ENST00000547394 TTC26A0AVF1 554 aa12.39□□□□□ -0.43
CUX1-212ENST00000547394 PSDA5PKW4 1024 aaPredicted RBP12.39□□□□□ -0.43
CUX1-212ENST00000547394 SPDYE3A6NKU9 549 aa12.39□□□□□ -0.43
CUX1-212ENST00000547394 ZBTB39O15060 712 aa12.39□□□□□ -0.43
CUX1-212ENST00000547394 MYO1BO43795 1136 aa12.39□□□□□ -0.43
CUX1-212ENST00000547394 KRT9P35527 623 aa12.39□□□□□ -0.43
CUX1-212ENST00000547394 RASSF7Q02833 373 aa12.39□□□□□ -0.43
CUX1-212ENST00000547394 STIM1Q13586 685 aa12.39□□□□□ -0.43
CUX1-212ENST00000547394 KCNB1Q14721 858 aa12.39□□□□□ -0.43
CUX1-212ENST00000547394 ZNRF3Q9ULT6 936 aa12.39□□□□□ -0.43
CUX1-212ENST00000547394 PAXBP1Q9Y5B6 917 aa12.39□□□□□ -0.43
CUX1-212ENST00000547394 MTIF2P46199 727 aaKnown RBP12.38□□□□□ -0.43
CUX1-212ENST00000547394 STAT2P52630 851 aa12.38□□□□□ -0.43
CUX1-212ENST00000547394 PABPC4Q13310 644 aaKnown RBP eCLIP12.38□□□□□ -0.432e-20■■■■■ 62.1
CUX1-212ENST00000547394 ELF2Q15723 593 aa12.38□□□□□ -0.43
CUX1-212ENST00000547394 SPDYE2Q495Y8 402 aa12.38□□□□□ -0.43
CUX1-212ENST00000547394 TBC1D10BQ4KMP7 808 aaPredicted RBP12.38□□□□□ -0.43
CUX1-212ENST00000547394 PPP4R3AQ6IN85 833 aa12.38□□□□□ -0.43
CUX1-212ENST00000547394 CTAGE1Q96RT6 745 aa12.38□□□□□ -0.43
CUX1-212ENST00000547394 TUBGCP2Q9BSJ2 902 aa12.38□□□□□ -0.43
CUX1-212ENST00000547394 AGPAT5Q9NUQ2 364 aa12.38□□□□□ -0.43
CUX1-212ENST00000547394 RGL1Q9NZL6 768 aa12.38□□□□□ -0.43
CUX1-212ENST00000547394 TRIM10Q9UDY6 481 aa12.38□□□□□ -0.43
CUX1-212ENST00000547394 HDAC9Q9UKV0 1011 aa12.38□□□□□ -0.43
CUX1-212ENST00000547394 H7C1D1 291 aa12.38□□□□□ -0.43
CUX1-212ENST00000547394 ZNF76P36508 570 aa12.38□□□□□ -0.43
CUX1-212ENST00000547394 ETF1P62495 437 aaKnown RBP12.38□□□□□ -0.43
CUX1-212ENST00000547394 FAM151AQ8WW52 585 aa12.38□□□□□ -0.43
CUX1-212ENST00000547394 SLF1Q9BQI6 1058 aa12.38□□□□□ -0.43
CUX1-212ENST00000547394 IKZF4Q9H2S9 585 aa12.38□□□□□ -0.43
CUX1-212ENST00000547394 ZSWIM4Q9H7M6 989 aa12.38□□□□□ -0.43
CUX1-212ENST00000547394 MAGEC2Q9UBF1 373 aaPredicted RBP12.38□□□□□ -0.43
CUX1-212ENST00000547394 C10orf71Q711Q0 1435 aa12.38□□□□□ -0.43
CUX1-212ENST00000547394 ATRNL1Q5VV63 1379 aa12.37□□□□□ -0.43
CUX1-212ENST00000547394 STX10O60499 249 aa12.37□□□□□ -0.43
CUX1-212ENST00000547394 RASA3Q14644 834 aa12.37□□□□□ -0.43
CUX1-212ENST00000547394 PPP1R18Q6NYC8 613 aa12.37□□□□□ -0.43
CUX1-212ENST00000547394 CPXCR1Q8N123 301 aa12.37□□□□□ -0.43
CUX1-212ENST00000547394 GMCL1P1Q8NEA9 526 aa12.37□□□□□ -0.43
CUX1-212ENST00000547394 ANKRD20A12PQ8NF67 263 aa12.37□□□□□ -0.43
CUX1-212ENST00000547394 GMCL1Q96IK5 515 aa12.37□□□□□ -0.43
CUX1-212ENST00000547394 FEZ1Q99689 392 aa12.37□□□□□ -0.43
CUX1-212ENST00000547394 RAB34Q9BZG1 259 aa12.37□□□□□ -0.43
CUX1-212ENST00000547394 SPDYE4A6NLX3 237 aa12.37□□□□□ -0.43
CUX1-212ENST00000547394 SFI1A8K8P3 1242 aa12.37□□□□□ -0.43
CUX1-212ENST00000547394 CTIFO43310 598 aaKnown RBP12.37□□□□□ -0.43
CUX1-212ENST00000547394 CCNE1P24864 410 aa12.37□□□□□ -0.43
CUX1-212ENST00000547394 AMPD3Q01432 767 aa12.37□□□□□ -0.43
CUX1-212ENST00000547394 APBA1Q02410 837 aa12.37□□□□□ -0.43
CUX1-212ENST00000547394 SYCP1Q15431 976 aa12.37□□□□□ -0.43
CUX1-212ENST00000547394 DLK2Q6UY11 383 aa12.37□□□□□ -0.43
CUX1-212ENST00000547394 GPBP1Q86WP2 473 aa12.37□□□□□ -0.43
CUX1-212ENST00000547394 MB21D1Q8N884 522 aa12.37□□□□□ -0.43
CUX1-212ENST00000547394 LENG9Q96B70 501 aa12.37□□□□□ -0.43
CUX1-212ENST00000547394 AGBL1Q96MI9 1066 aa12.37□□□□□ -0.43
CUX1-212ENST00000547394 PSMD1Q99460 953 aa12.37□□□□□ -0.43
CUX1-212ENST00000547394 ZNF341Q9BYN7 854 aa12.37□□□□□ -0.43
CUX1-212ENST00000547394 ABHD10Q9NUJ1 306 aa12.37□□□□□ -0.43
CUX1-212ENST00000547394 GREB1LQ9C091 1923 aaPredicted RBP12.37□□□□□ -0.43
CUX1-212ENST00000547394 DDX39AO00148 427 aaKnown RBP12.36□□□□□ -0.43
CUX1-212ENST00000547394 ERCC6LQ2NKX8 1250 aa12.36□□□□□ -0.43
CUX1-212ENST00000547394 CATSPER3Q86XQ3 398 aa12.36□□□□□ -0.43
CUX1-212ENST00000547394 PIGOQ8TEQ8 1089 aa12.36□□□□□ -0.43
CUX1-212ENST00000547394 ARHGEF10LQ9HCE6 1279 aa12.36□□□□□ -0.43
CUX1-212ENST00000547394 PIM2Q9P1W9 311 aa12.36□□□□□ -0.43
CUX1-212ENST00000547394 CENPFP49454 3210 aa12.36□□□□□ -0.43
CUX1-212ENST00000547394 FAM170AA1A519 330 aa12.36□□□□□ -0.43
CUX1-212ENST00000547394 LRRC10BA6NIK2 292 aa12.36□□□□□ -0.43
CUX1-212ENST00000547394 EML1O00423 815 aa12.36□□□□□ -0.43
CUX1-212ENST00000547394 EPHB6O15197 1021 aa12.36□□□□□ -0.43
CUX1-212ENST00000547394 MSH4O15457 936 aa12.36□□□□□ -0.43
CUX1-212ENST00000547394 KRT18P05783 430 aaKnown RBP12.36□□□□□ -0.43
CUX1-212ENST00000547394 PLA2G4BP0C869 781 aa12.36□□□□□ -0.43
CUX1-212ENST00000547394 POLD1P28340 1107 aa12.36□□□□□ -0.43
CUX1-212ENST00000547394 INPP5BP32019 993 aa12.36□□□□□ -0.43
CUX1-212ENST00000547394 TBC1D8BQ0IIM8 1120 aa12.36□□□□□ -0.43
CUX1-212ENST00000547394 COASYQ13057 564 aa12.36□□□□□ -0.43
CUX1-212ENST00000547394 R3HDM1Q15032 1099 aaKnown RBP12.36□□□□□ -0.43
CUX1-212ENST00000547394 TMEM119Q4V9L6 283 aa12.36□□□□□ -0.43
CUX1-212ENST00000547394 CCDC47Q96A33 483 aaKnown RBP12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms