RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 CCDC178Q5BJE1 867 aa9.9□□□□□ -0.82
USP28-215ENST00000545608 ADGRF4Q8IZF3 695 aa9.9□□□□□ -0.82
USP28-215ENST00000545608 ENAHQ8N8S7 591 aaPredicted RBP9.9□□□□□ -0.82
USP28-215ENST00000545608 USP38Q8NB14 1042 aa9.9□□□□□ -0.82
USP28-215ENST00000545608 RGS22Q8NE09 1264 aa9.9□□□□□ -0.82
USP28-215ENST00000545608 SYTL5Q8TDW5 730 aaPredicted RBP9.9□□□□□ -0.82
USP28-215ENST00000545608 SCFD2Q8WU76 684 aa9.9□□□□□ -0.82
USP28-215ENST00000545608 MTG1Q9BT17 334 aaPredicted RBP9.9□□□□□ -0.82
USP28-215ENST00000545608 KAT14Q9H8E8 782 aa9.9□□□□□ -0.82
USP28-215ENST00000545608 VAT1LQ9HCJ6 419 aa9.9□□□□□ -0.82
USP28-215ENST00000545608 COL20A1Q9P218 1284 aa9.9□□□□□ -0.82
USP28-215ENST00000545608 COL6A3P12111 3177 aa9.9□□□□□ -0.82
USP28-215ENST00000545608 DNAH12Q6ZR08 3092 aa9.9□□□□□ -0.83
USP28-215ENST00000545608 LRRC37A2A6NM11 1700 aa9.9□□□□□ -0.83
USP28-215ENST00000545608 TNKSO95271 1327 aa9.89□□□□□ -0.83
USP28-215ENST00000545608 A6NJR5 290 aa9.89□□□□□ -0.83
USP28-215ENST00000545608 HIP1O00291 1037 aa9.89□□□□□ -0.83
USP28-215ENST00000545608 NKRFO15226 690 aaKnown RBP eCLIP9.89□□□□□ -0.83
USP28-215ENST00000545608 SUPT20HL2P0C7V6 817 aa9.89□□□□□ -0.83
USP28-215ENST00000545608 NT5C2P49902 561 aa9.89□□□□□ -0.83
USP28-215ENST00000545608 IMMTQ16891 758 aaKnown RBP9.89□□□□□ -0.83
USP28-215ENST00000545608 QRICH1Q2TAL8 776 aa9.89□□□□□ -0.83
USP28-215ENST00000545608 ASPRV1Q53RT3 343 aa9.89□□□□□ -0.83
USP28-215ENST00000545608 FAM47CQ5HY64 1035 aa9.89□□□□□ -0.83
USP28-215ENST00000545608 CCDC62Q6P9F0 684 aa9.89□□□□□ -0.83
USP28-215ENST00000545608 RPUSD2Q8IZ73 545 aaKnown RBP9.89□□□□□ -0.83
USP28-215ENST00000545608 MPHOSPH6Q99547 160 aaKnown RBP9.89□□□□□ -0.83
USP28-215ENST00000545608 NKX2-4Q9H2Z4 354 aa9.89□□□□□ -0.83
USP28-215ENST00000545608 PRDM12Q9H4Q4 367 aa9.89□□□□□ -0.83
USP28-215ENST00000545608 JMJD4Q9H9V9 463 aa9.89□□□□□ -0.83
USP28-215ENST00000545608 CTNNA3Q9UI47 895 aa9.89□□□□□ -0.83
USP28-215ENST00000545608 MSRAQ9UJ68 235 aa9.89□□□□□ -0.83
USP28-215ENST00000545608 YBX2Q9Y2T7 364 aaKnown RBP9.89□□□□□ -0.83
USP28-215ENST00000545608 ABCB11O95342 1321 aa9.88□□□□□ -0.83
USP28-215ENST00000545608 CUL9Q8IWT3 2517 aa9.88□□□□□ -0.83
USP28-215ENST00000545608 B4DLN1 442 aa9.88□□□□□ -0.83
USP28-215ENST00000545608 PARP1P09874 1014 aaKnown RBP9.88□□□□□ -0.83
USP28-215ENST00000545608 C7P10643 843 aa9.88□□□□□ -0.83
USP28-215ENST00000545608 MRPL12P52815 198 aaKnown RBP9.88□□□□□ -0.83
USP28-215ENST00000545608 RABGGTBP53611 331 aa9.88□□□□□ -0.83
USP28-215ENST00000545608 ADGRE1Q14246 886 aa9.88□□□□□ -0.83
USP28-215ENST00000545608 TTLL4Q14679 1199 aa9.88□□□□□ -0.83
USP28-215ENST00000545608 RAB30Q15771 203 aa9.88□□□□□ -0.83
USP28-215ENST00000545608 LY6KQ17RY6 165 aa9.88□□□□□ -0.83
USP28-215ENST00000545608 BRDTQ58F21 947 aaPredicted RBP9.88□□□□□ -0.83
USP28-215ENST00000545608 SEPT14Q6ZU15 432 aa9.88□□□□□ -0.83
USP28-215ENST00000545608 CYB5R4Q7L1T6 521 aa9.88□□□□□ -0.83
USP28-215ENST00000545608 FBXO11Q86XK2 927 aa9.88□□□□□ -0.83
USP28-215ENST00000545608 STAG2Q8N3U4 1231 aa9.88□□□□□ -0.83
USP28-215ENST00000545608 KRT23Q9C075 422 aa9.88□□□□□ -0.83
USP28-215ENST00000545608 MTIF3Q9H2K0 278 aaKnown RBP9.88□□□□□ -0.83
USP28-215ENST00000545608 PRDM6Q9NQX0 595 aa9.88□□□□□ -0.83
USP28-215ENST00000545608 ZBBXA8MT70 800 aa9.87□□□□□ -0.83
USP28-215ENST00000545608 DHX16O60231 1041 aaKnown RBP9.87□□□□□ -0.83
USP28-215ENST00000545608 KPNA6O60684 536 aa9.87□□□□□ -0.83
USP28-215ENST00000545608 GSPT1P15170 499 aaKnown RBP9.87□□□□□ -0.83
USP28-215ENST00000545608 MYOGP15173 224 aa9.87□□□□□ -0.83
USP28-215ENST00000545608 SEC23AQ15436 765 aa9.87□□□□□ -0.83
USP28-215ENST00000545608 NFRKBQ6P4R8 1299 aa9.87□□□□□ -0.83
USP28-215ENST00000545608 DEFB128Q7Z7B8 93 aa9.87□□□□□ -0.83
USP28-215ENST00000545608 MCF2L2Q86YR7 1114 aa9.87□□□□□ -0.83
USP28-215ENST00000545608 NSUN6Q8TEA1 469 aaKnown RBP9.87□□□□□ -0.83
USP28-215ENST00000545608 AFG1LQ8WV93 481 aa9.87□□□□□ -0.83
USP28-215ENST00000545608 PPM1EQ8WY54 764 aa9.87□□□□□ -0.83
USP28-215ENST00000545608 RMDN3Q96TC7 470 aa9.87□□□□□ -0.83
USP28-215ENST00000545608 GAS2L1Q99501 681 aaPredicted RBP9.87□□□□□ -0.83
USP28-215ENST00000545608 UBAC1Q9BSL1 405 aa9.87□□□□□ -0.83
USP28-215ENST00000545608 MAF1Q9H063 256 aa9.87□□□□□ -0.83
USP28-215ENST00000545608 CNNM2Q9H8M5 875 aa9.87□□□□□ -0.83
USP28-215ENST00000545608 MRPL11Q9Y3B7 192 aaKnown RBP9.87□□□□□ -0.83
USP28-215ENST00000545608 SUPT16HQ9Y5B9 1047 aaKnown RBP9.87□□□□□ -0.83
USP28-215ENST00000545608 SLC4A7Q9Y6M7 1214 aa9.87□□□□□ -0.83
USP28-215ENST00000545608 RAD50Q92878 1312 aa9.86□□□□□ -0.83
USP28-215ENST00000545608 OPLAHO14841 1288 aa9.86□□□□□ -0.83
USP28-215ENST00000545608 PPP1R11O60927 126 aaPredicted RBP9.86□□□□□ -0.83
USP28-215ENST00000545608 CFBP00751 764 aa9.86□□□□□ -0.83
USP28-215ENST00000545608 GH1P01241 217 aa9.86□□□□□ -0.83
USP28-215ENST00000545608 MMP3P08254 477 aa9.86□□□□□ -0.83
USP28-215ENST00000545608 IQCF3P0C7M6 154 aa9.86□□□□□ -0.83
USP28-215ENST00000545608 EIF2AK2P19525 551 aaKnown RBP9.86□□□□□ -0.83
USP28-215ENST00000545608 CHMP4BP1P59074 171 aa9.86□□□□□ -0.83
USP28-215ENST00000545608 PTH1RQ03431 593 aa9.86□□□□□ -0.83
USP28-215ENST00000545608 PTPN11Q06124 597 aaPredicted RBP9.86□□□□□ -0.83
USP28-215ENST00000545608 ARHGAP1Q07960 439 aa9.86□□□□□ -0.83
USP28-215ENST00000545608 STXBP2Q15833 593 aa9.86□□□□□ -0.83
USP28-215ENST00000545608 SLC35G1Q2M3R5 365 aa9.86□□□□□ -0.83
USP28-215ENST00000545608 IFIT1BQ5T764 474 aaKnown RBP9.86□□□□□ -0.83
USP28-215ENST00000545608 TTC22Q5TAA0 569 aa9.86□□□□□ -0.83
USP28-215ENST00000545608 ARHGEF16Q5VV41 709 aa9.86□□□□□ -0.83
USP28-215ENST00000545608 CHST3Q7LGC8 479 aa9.86□□□□□ -0.83
USP28-215ENST00000545608 KAT2BQ92831 832 aa9.86□□□□□ -0.83
USP28-215ENST00000545608 MTMR8Q96EF0 704 aa9.86□□□□□ -0.83
USP28-215ENST00000545608 IWS1Q96ST2 819 aa9.86□□□□□ -0.83
USP28-215ENST00000545608 SLC28A3Q9HAS3 691 aa9.86□□□□□ -0.83
USP28-215ENST00000545608 MAD2L2Q9UI95 211 aa9.86□□□□□ -0.83
USP28-215ENST00000545608 DDX41Q9UJV9 622 aaKnown RBP9.86□□□□□ -0.83
USP28-215ENST00000545608 PALM3A6NDB9 673 aaPredicted RBP9.85□□□□□ -0.83
USP28-215ENST00000545608 KLRF2D3W0D1 207 aa9.85□□□□□ -0.83
USP28-215ENST00000545608 RBAK-RBAKDNI3L0D1 243 aa9.85□□□□□ -0.83
USP28-215ENST00000545608 EIF3JO75822 258 aaKnown RBP9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms