RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	DUSP10	Q9Y6W6	482 aa		13.93	□□□□□ -0.18
RNF4-222	ENST00000541204	POTEM	A6NI47	508 aa		13.93	□□□□□ -0.18
RNF4-222	ENST00000541204	ZMYND10	O75800	440 aa		13.93	□□□□□ -0.18
RNF4-222	ENST00000541204	TNNT3	P45378	269 aa	Predicted RBP	13.93	□□□□□ -0.18
RNF4-222	ENST00000541204	CALCRL	Q16602	461 aa		13.93	□□□□□ -0.18
RNF4-222	ENST00000541204	MEA1	Q16626	185 aa		13.93	□□□□□ -0.18
RNF4-222	ENST00000541204	PAPD7	Q5XG87	772 aa	Known RBP	13.93	□□□□□ -0.18
RNF4-222	ENST00000541204	GDAP1L1	Q96MZ0	367 aa		13.93	□□□□□ -0.18
RNF4-222	ENST00000541204	TTYH3	Q9C0H2	523 aa		13.93	□□□□□ -0.18
RNF4-222	ENST00000541204	CCSER1	Q9C0I3	900 aa		13.93	□□□□□ -0.18
RNF4-222	ENST00000541204	TDRD3	Q9H7E2	651 aa	Known RBP	13.93	□□□□□ -0.18
RNF4-222	ENST00000541204	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	13.93	□□□□□ -0.18
RNF4-222	ENST00000541204	LAD1	O00515	517 aa		13.92	□□□□□ -0.18
RNF4-222	ENST00000541204	ZNF185	O15231	689 aa		13.92	□□□□□ -0.18
RNF4-222	ENST00000541204	KRT86	O43790	486 aa		13.92	□□□□□ -0.18
RNF4-222	ENST00000541204	EEF2	P13639	858 aa	Known RBP	13.92	□□□□□ -0.18
RNF4-222	ENST00000541204	ASIC1	P78348	528 aa		13.92	□□□□□ -0.18
RNF4-222	ENST00000541204	TBC1D8B	Q0IIM8	1120 aa		13.92	□□□□□ -0.18
RNF4-222	ENST00000541204	DACT2	Q5SW24	774 aa		13.92	□□□□□ -0.18
RNF4-222	ENST00000541204	SH3BP5L	Q7L8J4	393 aa		13.92	□□□□□ -0.18
RNF4-222	ENST00000541204	PCMTD1	Q96MG8	357 aa	Predicted RBP	13.92	□□□□□ -0.18
RNF4-222	ENST00000541204	FAM198A	Q9UFP1	575 aa		13.92	□□□□□ -0.18
RNF4-222	ENST00000541204	LRRC37A	A6NMS7	1700 aa		13.92	□□□□□ -0.18
RNF4-222	ENST00000541204	NKRF	O15226	690 aa	Known RBP eCLIP	13.92	□□□□□ -0.18
RNF4-222	ENST00000541204	SNHG28	P0DPA3	235 aa		13.92	□□□□□ -0.18
RNF4-222	ENST00000541204	PRPH	P41219	470 aa		13.92	□□□□□ -0.18
RNF4-222	ENST00000541204	CYP27A1	Q02318	531 aa		13.92	□□□□□ -0.18
RNF4-222	ENST00000541204	SEPT2	Q15019	361 aa		13.92	□□□□□ -0.18
RNF4-222	ENST00000541204	CERKL	Q49MI3	558 aa	Predicted RBP	13.92	□□□□□ -0.18
RNF4-222	ENST00000541204	ANKRD40	Q6AI12	368 aa		13.92	□□□□□ -0.18
RNF4-222	ENST00000541204	FLAD1	Q8NFF5	587 aa		13.92	□□□□□ -0.18
RNF4-222	ENST00000541204	ZDHHC15	Q96MV8	337 aa		13.92	□□□□□ -0.18
RNF4-222	ENST00000541204	MMTAG2	Q9BU76	263 aa	Known RBP	13.92	□□□□□ -0.18
RNF4-222	ENST00000541204	PDGFD	Q9GZP0	370 aa	Predicted RBP	13.92	□□□□□ -0.18
RNF4-222	ENST00000541204	ACBD3	Q9H3P7	528 aa		13.92	□□□□□ -0.18
RNF4-222	ENST00000541204	FAM204A	Q9H8W3	233 aa		13.92	□□□□□ -0.18
RNF4-222	ENST00000541204	PNMA6F	A0A0J9YX94	578 aa		13.91	□□□□□ -0.18
RNF4-222	ENST00000541204	MACROD2	A1Z1Q3	448 aa		13.91	□□□□□ -0.18
RNF4-222	ENST00000541204	USP17L15	C9J2P7	530 aa		13.91	□□□□□ -0.18
RNF4-222	ENST00000541204	USP17L13	C9JLJ4	530 aa		13.91	□□□□□ -0.18
RNF4-222	ENST00000541204	USP17L11	C9JVI0	530 aa		13.91	□□□□□ -0.18
RNF4-222	ENST00000541204	USP17L18	D6R9N7	530 aa		13.91	□□□□□ -0.18
RNF4-222	ENST00000541204	USP17L22	D6RA61	530 aa		13.91	□□□□□ -0.18
RNF4-222	ENST00000541204	USP17L17	D6RBQ6	530 aa		13.91	□□□□□ -0.18
RNF4-222	ENST00000541204	USP17L19	D6RCP7	530 aa		13.91	□□□□□ -0.18
RNF4-222	ENST00000541204	USP17L20	D6RJB6	530 aa		13.91	□□□□□ -0.18
RNF4-222	ENST00000541204	FCER1A	P12319	257 aa		13.91	□□□□□ -0.18
RNF4-222	ENST00000541204	TAL1	P17542	331 aa	Predicted RBP	13.91	□□□□□ -0.18
RNF4-222	ENST00000541204	CYLC1	P35663	651 aa	Predicted RBP	13.91	□□□□□ -0.18
RNF4-222	ENST00000541204	SLC1A4	P43007	532 aa		13.91	□□□□□ -0.18
RNF4-222	ENST00000541204	PDE4D	Q08499	809 aa		13.91	□□□□□ -0.18
RNF4-222	ENST00000541204	USP17L24	Q0WX57	530 aa		13.91	□□□□□ -0.18
RNF4-222	ENST00000541204	FOXR1	Q6PIV2	292 aa		13.91	□□□□□ -0.18
RNF4-222	ENST00000541204	USP17L6P	Q6QN14	398 aa		13.91	□□□□□ -0.18
RNF4-222	ENST00000541204	BBX	Q8WY36	941 aa	Predicted RBP	13.91	□□□□□ -0.18
RNF4-222	ENST00000541204	CNOT6L	Q96LI5	555 aa	Known RBP	13.91	□□□□□ -0.18
RNF4-222	ENST00000541204	ZNHIT6	Q9NWK9	470 aa	Known RBP	13.91	□□□□□ -0.18
RNF4-222	ENST00000541204	LRWD1	Q9UFC0	647 aa		13.91	□□□□□ -0.18
RNF4-222	ENST00000541204	PLIN4	Q96Q06	1357 aa		13.91	□□□□□ -0.18
RNF4-222	ENST00000541204	TRIM66	O15016	1216 aa		13.91	□□□□□ -0.18
RNF4-222	ENST00000541204	C21orf2	O43822	256 aa		13.91	□□□□□ -0.18
RNF4-222	ENST00000541204	EDIL3	O43854	480 aa		13.91	□□□□□ -0.18
RNF4-222	ENST00000541204	MARCH6	O60337	910 aa		13.91	□□□□□ -0.18
RNF4-222	ENST00000541204	SYF2	O95926	243 aa	Known RBP	13.91	□□□□□ -0.18
RNF4-222	ENST00000541204	MYL1	P05976	194 aa		13.91	□□□□□ -0.18
RNF4-222	ENST00000541204	SMARCA1	P28370	1054 aa		13.91	□□□□□ -0.18
RNF4-222	ENST00000541204	STK4	Q13043	487 aa		13.91	□□□□□ -0.18
RNF4-222	ENST00000541204	ZNF772	Q68DY9	489 aa	Predicted RBP	13.91	□□□□□ -0.18
RNF4-222	ENST00000541204	GSPT2	Q8IYD1	628 aa	Known RBP	13.91	□□□□□ -0.18
RNF4-222	ENST00000541204	P2RX5	Q93086	422 aa		13.91	□□□□□ -0.18
RNF4-222	ENST00000541204	DHTKD1	Q96HY7	919 aa	Predicted RBP	13.91	□□□□□ -0.18
RNF4-222	ENST00000541204	MED4	Q9NPJ6	270 aa		13.91	□□□□□ -0.18
RNF4-222	ENST00000541204	MYO1C	O00159	1063 aa		13.9	□□□□□ -0.18
RNF4-222	ENST00000541204	RNF40	O75150	1001 aa		13.9	□□□□□ -0.18
RNF4-222	ENST00000541204	COL11A2	P13942	1736 aa	Predicted RBP	13.9	□□□□□ -0.18
RNF4-222	ENST00000541204	MTIF2	P46199	727 aa	Known RBP	13.9	□□□□□ -0.18
RNF4-222	ENST00000541204	EN1	Q05925	392 aa	Predicted RBP	13.9	□□□□□ -0.18
RNF4-222	ENST00000541204	IK	Q13123	557 aa	Predicted RBP	13.9	□□□□□ -0.18
RNF4-222	ENST00000541204	STRIP1	Q5VSL9	837 aa		13.9	□□□□□ -0.18
RNF4-222	ENST00000541204	DYM	Q7RTS9	669 aa		13.9	□□□□□ -0.18
RNF4-222	ENST00000541204	EHBP1	Q8NDI1	1231 aa		13.9	□□□□□ -0.18
RNF4-222	ENST00000541204	CAGE1	Q8TC20	777 aa		13.9	□□□□□ -0.18
RNF4-222	ENST00000541204	NUDT12	Q9BQG2	462 aa		13.9	□□□□□ -0.18
RNF4-222	ENST00000541204	JADE2	Q9NQC1	790 aa		13.9	□□□□□ -0.18
RNF4-222	ENST00000541204	PDE2A	O00408	941 aa	Predicted RBP	13.9	□□□□□ -0.18
RNF4-222	ENST00000541204	IPO7	O95373	1038 aa	Known RBP	13.9	□□□□□ -0.18
RNF4-222	ENST00000541204	IDE	P14735	1019 aa		13.9	□□□□□ -0.18
RNF4-222	ENST00000541204	ZBED6	P86452	979 aa		13.9	□□□□□ -0.18
RNF4-222	ENST00000541204	EZH2	Q15910	746 aa	Known RBP	13.9	□□□□□ -0.18
RNF4-222	ENST00000541204	C10orf67	Q8IYJ2	551 aa		13.9	□□□□□ -0.18
RNF4-222	ENST00000541204	NOC3L	Q8WTT2	800 aa	Known RBP	13.9	□□□□□ -0.18
RNF4-222	ENST00000541204	RIN2	Q8WYP3	895 aa	Predicted RBP	13.9	□□□□□ -0.18
RNF4-222	ENST00000541204	HINFP	Q9BQA5	517 aa		13.9	□□□□□ -0.18
RNF4-222	ENST00000541204	NOC4L	Q9BVI4	516 aa	Known RBP	13.9	□□□□□ -0.18
RNF4-222	ENST00000541204	NUP58	Q9BVL2	599 aa		13.9	□□□□□ -0.18
RNF4-222	ENST00000541204	TRIM9	Q9C026	710 aa		13.9	□□□□□ -0.18
RNF4-222	ENST00000541204	PSTPIP2	Q9H939	334 aa		13.9	□□□□□ -0.18
RNF4-222	ENST00000541204	EIF3CL	B5ME19	914 aa	Known RBP	13.89	□□□□□ -0.19
RNF4-222	ENST00000541204	ZBTB5	O15062	677 aa		13.89	□□□□□ -0.19
RNF4-222	ENST00000541204	MYBL2	P10244	700 aa		13.89	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms