RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 IDEP14735 1019 aa9.25□□□□□ -0.93
CSMD1-213ENST00000523488 CNGA1P29973 690 aa9.25□□□□□ -0.93
CSMD1-213ENST00000523488 CLCN2P51788 898 aa9.25□□□□□ -0.93
CSMD1-213ENST00000523488 C2orf54Q08AI8 447 aa9.25□□□□□ -0.93
CSMD1-213ENST00000523488 EZH2Q15910 746 aaKnown RBP9.25□□□□□ -0.93
CSMD1-213ENST00000523488 PARP6Q2NL67 630 aa9.25□□□□□ -0.93
CSMD1-213ENST00000523488 OR52E8Q6IFG1 317 aa9.25□□□□□ -0.93
CSMD1-213ENST00000523488 APOA5Q6Q788 366 aa9.25□□□□□ -0.93
CSMD1-213ENST00000523488 SPDYE1Q8NFV5 336 aaPredicted RBP9.25□□□□□ -0.93
CSMD1-213ENST00000523488 PARD3BQ8TEW8 1205 aa9.25□□□□□ -0.93
CSMD1-213ENST00000523488 SPAG5Q96R06 1193 aa9.25□□□□□ -0.93
CSMD1-213ENST00000523488 PAG1Q9NWQ8 432 aa9.25□□□□□ -0.93
CSMD1-213ENST00000523488 CNOT8Q9UFF9 292 aaKnown RBP9.25□□□□□ -0.93
CSMD1-213ENST00000523488 CCT6AP40227 531 aaKnown RBP9.25□□□□□ -0.93
CSMD1-213ENST00000523488 HIBCHQ6NVY1 386 aaPredicted RBP9.25□□□□□ -0.93
CSMD1-213ENST00000523488 TTI2Q6NXR4 508 aa9.25□□□□□ -0.93
CSMD1-213ENST00000523488 PBKQ96KB5 322 aa9.25□□□□□ -0.93
CSMD1-213ENST00000523488 ZNHIT6Q9NWK9 470 aaKnown RBP9.25□□□□□ -0.93
CSMD1-213ENST00000523488 SLC4A7Q9Y6M7 1214 aa9.25□□□□□ -0.93
CSMD1-213ENST00000523488 DOT1LQ8TEK3 1739 aa9.24□□□□□ -0.93
CSMD1-213ENST00000523488 TCRBV5S4A2TA0A5A2 114 aa9.24□□□□□ -0.93
CSMD1-213ENST00000523488 GOLGA8BA8MQT2 603 aa9.24□□□□□ -0.93
CSMD1-213ENST00000523488 O00370 1275 aa9.24□□□□□ -0.93
CSMD1-213ENST00000523488 ACADSP16219 412 aa9.24□□□□□ -0.93
CSMD1-213ENST00000523488 ATP2C1P98194 919 aaPredicted RBP9.24□□□□□ -0.93
CSMD1-213ENST00000523488 PAK2Q13177 524 aa9.24□□□□□ -0.93
CSMD1-213ENST00000523488 SETDB1Q15047 1291 aa9.24□□□□□ -0.93
CSMD1-213ENST00000523488 ACTRT1Q8TDG2 376 aa9.24□□□□□ -0.93
CSMD1-213ENST00000523488 DDX43Q9NXZ2 648 aaKnown RBP9.24□□□□□ -0.93
CSMD1-213ENST00000523488 B4DLN1 442 aa9.24□□□□□ -0.93
CSMD1-213ENST00000523488 ZSCAN9O15535 394 aaPredicted RBP9.24□□□□□ -0.93
CSMD1-213ENST00000523488 GLI1P08151 1106 aa9.24□□□□□ -0.93
CSMD1-213ENST00000523488 FGRP09769 529 aa9.24□□□□□ -0.93
CSMD1-213ENST00000523488 PAFAH1B1P43034 410 aa9.24□□□□□ -0.93
CSMD1-213ENST00000523488 PIP4K2AP48426 406 aaPredicted RBP9.24□□□□□ -0.93
CSMD1-213ENST00000523488 MRPS25P82663 173 aaKnown RBP9.24□□□□□ -0.93
CSMD1-213ENST00000523488 CREB5Q02930 508 aa9.24□□□□□ -0.93
CSMD1-213ENST00000523488 PPP2R5BQ15173 497 aa9.24□□□□□ -0.93
CSMD1-213ENST00000523488 MEI1Q5TIA1 1274 aa9.24□□□□□ -0.93
CSMD1-213ENST00000523488 CPLX4Q7Z7G2 160 aa9.24□□□□□ -0.93
CSMD1-213ENST00000523488 SLFN11Q7Z7L1 901 aa9.24□□□□□ -0.93
CSMD1-213ENST00000523488 NSMCE1Q8WV22 266 aa9.24□□□□□ -0.93
CSMD1-213ENST00000523488 CASKIN2Q8WXE0 1202 aa9.24□□□□□ -0.93
CSMD1-213ENST00000523488 RAPGEF5Q92565 580 aa9.24□□□□□ -0.93
CSMD1-213ENST00000523488 PHF20Q9BVI0 1012 aa9.24□□□□□ -0.93
CSMD1-213ENST00000523488 ANGEL1Q9UNK9 670 aaKnown RBP9.24□□□□□ -0.93
CSMD1-213ENST00000523488 GTPBP6O43824 516 aaPredicted RBP9.23□□□□□ -0.93
CSMD1-213ENST00000523488 FAM153BP0C7A2 387 aa9.23□□□□□ -0.93
CSMD1-213ENST00000523488 TCEAL1Q15170 157 aa9.23□□□□□ -0.93
CSMD1-213ENST00000523488 PROSER3Q2NL68 480 aa9.23□□□□□ -0.93
CSMD1-213ENST00000523488 FAM153CQ494X1 144 aa9.23□□□□□ -0.93
CSMD1-213ENST00000523488 HGSNATQ68CP4 663 aa9.23□□□□□ -0.93
CSMD1-213ENST00000523488 IFT20Q8IY31 132 aa9.23□□□□□ -0.93
CSMD1-213ENST00000523488 CACNA2D3Q8IZS8 1091 aa9.23□□□□□ -0.93
CSMD1-213ENST00000523488 OLIG1Q8TAK6 271 aa9.23□□□□□ -0.93
CSMD1-213ENST00000523488 OSBP2Q969R2 916 aa9.23□□□□□ -0.93
CSMD1-213ENST00000523488 PPP1R14BQ96C90 147 aa9.23□□□□□ -0.93
CSMD1-213ENST00000523488 GJB4Q9NTQ9 266 aa9.23□□□□□ -0.93
CSMD1-213ENST00000523488 FAM153AQ9UHL3 310 aa9.23□□□□□ -0.93
CSMD1-213ENST00000523488 KLF18A0A0U1RQI7 1052 aa9.23□□□□□ -0.93
CSMD1-213ENST00000523488 M0R2N6 131 aa9.23□□□□□ -0.93
CSMD1-213ENST00000523488 CHGBP05060 677 aa9.23□□□□□ -0.93
CSMD1-213ENST00000523488 CLTAP09496 248 aa9.23□□□□□ -0.93
CSMD1-213ENST00000523488 NCALDP61601 193 aa9.23□□□□□ -0.93
CSMD1-213ENST00000523488 RRP12Q5JTH9 1297 aaKnown RBP9.23□□□□□ -0.93
CSMD1-213ENST00000523488 ABTB2Q8N961 1025 aa9.23□□□□□ -0.93
CSMD1-213ENST00000523488 PLA2G12BQ9BX93 195 aa9.23□□□□□ -0.93
CSMD1-213ENST00000523488 STXBP5LQ9Y2K9 1186 aa9.23□□□□□ -0.93
CSMD1-213ENST00000523488 NUP98P52948 1817 aa9.23□□□□□ -0.93
CSMD1-213ENST00000523488 TNRQ92752 1358 aa9.23□□□□□ -0.93
CSMD1-213ENST00000523488 NRAPQ86VF7 1730 aa9.23□□□□□ -0.93
CSMD1-213ENST00000523488 RNF8O76064 485 aa9.23□□□□□ -0.93
CSMD1-213ENST00000523488 RHOBTB3O94955 611 aa9.23□□□□□ -0.93
CSMD1-213ENST00000523488 ANP32DO95626 131 aa9.23□□□□□ -0.93
CSMD1-213ENST00000523488 PPP2R2AP63151 447 aa9.23□□□□□ -0.93
CSMD1-213ENST00000523488 NUGGCQ68CJ6 796 aa9.23□□□□□ -0.93
CSMD1-213ENST00000523488 ANKLE1Q8NAG6 615 aa9.23□□□□□ -0.93
CSMD1-213ENST00000523488 IFT81Q8WYA0 676 aa9.23□□□□□ -0.93
CSMD1-213ENST00000523488 IP6K1Q92551 441 aa9.23□□□□□ -0.93
CSMD1-213ENST00000523488 BAP1Q92560 729 aa9.23□□□□□ -0.93
CSMD1-213ENST00000523488 CCDC43Q96MW1 224 aaKnown RBP9.23□□□□□ -0.93
CSMD1-213ENST00000523488 HAPLN3Q96S86 360 aa9.23□□□□□ -0.93
CSMD1-213ENST00000523488 VPS16Q9H269 839 aa9.23□□□□□ -0.93
CSMD1-213ENST00000523488 GREB1LQ9C091 1923 aaPredicted RBP9.22□□□□□ -0.93
CSMD1-213ENST00000523488 KCNJ18B7U540 433 aa9.22□□□□□ -0.93
CSMD1-213ENST00000523488 ZNF185O15231 689 aa9.22□□□□□ -0.93
CSMD1-213ENST00000523488 POLR2DO15514 142 aaKnown RBP9.22□□□□□ -0.93
CSMD1-213ENST00000523488 RNMTO43148 476 aaKnown RBP9.22□□□□□ -0.93
CSMD1-213ENST00000523488 A1BGP04217 495 aa9.22□□□□□ -0.93
CSMD1-213ENST00000523488 DNM2P50570 870 aa9.22□□□□□ -0.93
CSMD1-213ENST00000523488 SLC7A5Q01650 507 aa9.22□□□□□ -0.93
CSMD1-213ENST00000523488 KCNJ12Q14500 433 aa9.22□□□□□ -0.93
CSMD1-213ENST00000523488 IMMTQ16891 758 aaKnown RBP9.22□□□□□ -0.93
CSMD1-213ENST00000523488 ESCO1Q5FWF5 840 aa9.22□□□□□ -0.93
CSMD1-213ENST00000523488 MFSD5Q6N075 450 aa9.22□□□□□ -0.93
CSMD1-213ENST00000523488 NCOA7Q8NI08 942 aa9.22□□□□□ -0.93
CSMD1-213ENST00000523488 TBC1D16Q8TBP0 767 aa9.22□□□□□ -0.93
CSMD1-213ENST00000523488 HVCN1Q96D96 273 aa9.22□□□□□ -0.93
CSMD1-213ENST00000523488 PCMTD1Q96MG8 357 aaPredicted RBP9.22□□□□□ -0.93
CSMD1-213ENST00000523488 DUSP9Q99956 384 aaKnown RBP9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms