RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 EDNRBP24530 442 aa17.06■□□□□ 0.32
NUP54-213ENST00000513352 CACNB2Q08289 660 aaPredicted RBP17.06■□□□□ 0.32
NUP54-213ENST00000513352 INF2Q27J81 1249 aa17.06■□□□□ 0.32
NUP54-213ENST00000513352 FOXD4L5Q5VV16 416 aaPredicted RBP17.06■□□□□ 0.32
NUP54-213ENST00000513352 PCNX4Q63HM2 1172 aa17.06■□□□□ 0.32
NUP54-213ENST00000513352 FOXD4L4Q8WXT5 416 aaPredicted RBP17.06■□□□□ 0.32
NUP54-213ENST00000513352 FOXP1Q9H334 677 aaPredicted RBP17.06■□□□□ 0.32
NUP54-213ENST00000513352 RTEL1Q9NZ71 1219 aa17.06■□□□□ 0.32
NUP54-213ENST00000513352 FAM205CA6NFA0 338 aa17.05■□□□□ 0.32
NUP54-213ENST00000513352 KIF28PB7ZC32 967 aa17.05■□□□□ 0.32
NUP54-213ENST00000513352 STX6O43752 255 aa17.05■□□□□ 0.32
NUP54-213ENST00000513352 ACVR2BQ13705 512 aa17.05■□□□□ 0.32
NUP54-213ENST00000513352 SEPT14Q6ZU15 432 aa17.05■□□□□ 0.32
NUP54-213ENST00000513352 FERMT3Q86UX7 667 aa17.05■□□□□ 0.32
NUP54-213ENST00000513352 MORC4Q8TE76 937 aa17.05■□□□□ 0.32
NUP54-213ENST00000513352 ABHD16BQ9H3Z7 469 aa17.05■□□□□ 0.32
NUP54-213ENST00000513352 VTA1Q9NP79 307 aa17.05■□□□□ 0.32
NUP54-213ENST00000513352 KIAA1217Q5T5P2 1943 aa17.05■□□□□ 0.32
NUP54-213ENST00000513352 EIF3JO75822 258 aaKnown RBP17.04■□□□□ 0.32
NUP54-213ENST00000513352 ATP2B1P20020 1258 aa17.04■□□□□ 0.32
NUP54-213ENST00000513352 LETM2Q2VYF4 491 aa17.04■□□□□ 0.32
NUP54-213ENST00000513352 EARS2Q5JPH6 523 aaKnown RBP17.04■□□□□ 0.32
NUP54-213ENST00000513352 XRRA1Q6P2D8 792 aa17.04■□□□□ 0.32
NUP54-213ENST00000513352 VSIG10LQ86VR7 867 aa17.04■□□□□ 0.32
NUP54-213ENST00000513352 NOSTRINQ8IVI9 506 aa17.04■□□□□ 0.32
NUP54-213ENST00000513352 TNFRSF25Q93038 417 aa17.04■□□□□ 0.32
NUP54-213ENST00000513352 STAM2O75886 525 aa17.03■□□□□ 0.32
NUP54-213ENST00000513352 CYBAP13498 195 aa17.03■□□□□ 0.32
NUP54-213ENST00000513352 CCND3P30281 292 aaPredicted RBP17.03■□□□□ 0.32
NUP54-213ENST00000513352 MRPS9P82933 396 aaKnown RBP17.03■□□□□ 0.32
NUP54-213ENST00000513352 GNPTABQ3T906 1256 aa17.03■□□□□ 0.32
NUP54-213ENST00000513352 NEK8Q86SG6 692 aa17.03■□□□□ 0.32
NUP54-213ENST00000513352 NLRX1Q86UT6 975 aa17.03■□□□□ 0.32
NUP54-213ENST00000513352 PDGFCQ9NRA1 345 aa17.03■□□□□ 0.32
NUP54-213ENST00000513352 NOL7Q9UMY1 257 aaKnown RBP17.03■□□□□ 0.32
NUP54-213ENST00000513352 U2AF2P26368 475 aaKnown RBP eCLIP17.02■□□□□ 0.325e-7■□□□□ 8.9
NUP54-213ENST00000513352 ADCYAP1R1P41586 468 aa17.02■□□□□ 0.32
NUP54-213ENST00000513352 CCDC144BQ3MJ40 725 aa17.02■□□□□ 0.32
NUP54-213ENST00000513352 TRPV1Q8NER1 839 aa17.02■□□□□ 0.32
NUP54-213ENST00000513352 MXRA8Q9BRK3 442 aa17.02■□□□□ 0.32
NUP54-213ENST00000513352 HMX1Q9NP08 348 aaPredicted RBP17.02■□□□□ 0.32
NUP54-213ENST00000513352 NRBP1Q9UHY1 535 aa17.02■□□□□ 0.32
NUP54-213ENST00000513352 FAM184BQ9ULE4 1060 aa17.02■□□□□ 0.32
NUP54-213ENST00000513352 MTMR6Q9Y217 621 aa17.02■□□□□ 0.32
NUP54-213ENST00000513352 MRVI1Q9Y6F6 885 aa17.02■□□□□ 0.32
NUP54-213ENST00000513352 CCNT1O60563 726 aaKnown RBP17.01■□□□□ 0.31
NUP54-213ENST00000513352 TDP2O95551 362 aa17.01■□□□□ 0.31
NUP54-213ENST00000513352 IGHA2P01877 340 aa17.01■□□□□ 0.31
NUP54-213ENST00000513352 CYP3A4P08684 503 aa17.01■□□□□ 0.31
NUP54-213ENST00000513352 ZNF865P0CJ78 1059 aaPredicted RBP17.01■□□□□ 0.31
NUP54-213ENST00000513352 USP11P51784 963 aa17.01■□□□□ 0.31
NUP54-213ENST00000513352 MTMR1Q13613 665 aa17.01■□□□□ 0.31
NUP54-213ENST00000513352 PRR16Q569H4 304 aa17.01■□□□□ 0.31
NUP54-213ENST00000513352 COL13A1Q5TAT6 717 aaPredicted RBP17.01■□□□□ 0.31
NUP54-213ENST00000513352 ANO1Q5XXA6 986 aa17.01■□□□□ 0.31
NUP54-213ENST00000513352 PLA2G4DQ86XP0 818 aa17.01■□□□□ 0.31
NUP54-213ENST00000513352 SCFD2Q8WU76 684 aa17.01■□□□□ 0.31
NUP54-213ENST00000513352 NAP1L4Q99733 375 aaKnown RBP17.01■□□□□ 0.31
NUP54-213ENST00000513352 WDR11Q9BZH6 1224 aa17.01■□□□□ 0.31
NUP54-213ENST00000513352 KATNBL1Q9H079 304 aa17.01■□□□□ 0.31
NUP54-213ENST00000513352 UNC93B1Q9H1C4 597 aa17.01■□□□□ 0.31
NUP54-213ENST00000513352 PKD2L1Q9P0L9 805 aa17.01■□□□□ 0.31
NUP54-213ENST00000513352 UBIAD1Q9Y5Z9 338 aa17.01■□□□□ 0.31
NUP54-213ENST00000513352 HTTP42858 3142 aa17■□□□□ 0.31
NUP54-213ENST00000513352 FIBPO43427 364 aa17■□□□□ 0.31
NUP54-213ENST00000513352 SORBS3O60504 671 aa17■□□□□ 0.31
NUP54-213ENST00000513352 TXNP10599 105 aaKnown RBP17■□□□□ 0.31
NUP54-213ENST00000513352 CCL5P13501 91 aa17■□□□□ 0.31
NUP54-213ENST00000513352 AKR1A1P14550 325 aa17■□□□□ 0.31
NUP54-213ENST00000513352 ITGB5P18084 799 aa17■□□□□ 0.31
NUP54-213ENST00000513352 TNFAIP2Q03169 654 aa17■□□□□ 0.31
NUP54-213ENST00000513352 TTLL4Q14679 1199 aa17■□□□□ 0.31
NUP54-213ENST00000513352 MTFR1Q15390 333 aa17■□□□□ 0.31
NUP54-213ENST00000513352 CEP55Q53EZ4 464 aa17■□□□□ 0.31
NUP54-213ENST00000513352 MAP3K21Q5TCX8 1036 aa17■□□□□ 0.31
NUP54-213ENST00000513352 TAPT1Q6NXT6 567 aa17■□□□□ 0.31
NUP54-213ENST00000513352 BRAPQ7Z569 592 aa17■□□□□ 0.31
NUP54-213ENST00000513352 CYP2W1Q8TAV3 490 aa17■□□□□ 0.31
NUP54-213ENST00000513352 LENG1Q96BZ8 264 aaPredicted RBP17■□□□□ 0.31
NUP54-213ENST00000513352 GPRASP2Q96D09 838 aa17■□□□□ 0.31
NUP54-213ENST00000513352 INPP4AQ96PE3 977 aaPredicted RBP17■□□□□ 0.31
NUP54-213ENST00000513352 UIMC1Q96RL1 719 aa17■□□□□ 0.31
NUP54-213ENST00000513352 XRN2Q9H0D6 950 aaKnown RBP eCLIP17■□□□□ 0.31
NUP54-213ENST00000513352 RNF208Q9H0X6 261 aa17■□□□□ 0.31
NUP54-213ENST00000513352 JADE2Q9NQC1 790 aa17■□□□□ 0.31
NUP54-213ENST00000513352 DDX25Q9UHL0 483 aaKnown RBP17■□□□□ 0.31
NUP54-213ENST00000513352 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.99■□□□□ 0.31
NUP54-213ENST00000513352 FAM86B1E9PN63 330 aa16.99■□□□□ 0.31
NUP54-213ENST00000513352 SEPT4O43236 478 aa16.99■□□□□ 0.31
NUP54-213ENST00000513352 MARCH6O60337 910 aa16.99■□□□□ 0.31
NUP54-213ENST00000513352 RGS20O76081 388 aa16.99■□□□□ 0.31
NUP54-213ENST00000513352 FAM86B2P0C5J1 330 aa16.99■□□□□ 0.31
NUP54-213ENST00000513352 ZSCAN22P10073 491 aaPredicted RBP16.99■□□□□ 0.31
NUP54-213ENST00000513352 PDIA4P13667 645 aaKnown RBP16.99■□□□□ 0.31
NUP54-213ENST00000513352 GCFC2P16383 781 aaKnown RBP16.99■□□□□ 0.31
NUP54-213ENST00000513352 SETQ01105 290 aaPredicted RBP16.99■□□□□ 0.31
NUP54-213ENST00000513352 RESTQ13127 1097 aa16.99■□□□□ 0.31
NUP54-213ENST00000513352 PKP1Q13835 747 aa16.99■□□□□ 0.31
NUP54-213ENST00000513352 LY6KQ17RY6 165 aa16.99■□□□□ 0.31
NUP54-213ENST00000513352 TTC38Q5R3I4 469 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms