RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 LAMC2Q13753 1193 aa12.23□□□□□ -0.45
UBR4-208ENST00000459947 PKN1Q16512 942 aa12.23□□□□□ -0.45
UBR4-208ENST00000459947 ME3Q16798 604 aa12.23□□□□□ -0.45
UBR4-208ENST00000459947 KIF2CQ99661 725 aa12.23□□□□□ -0.45
UBR4-208ENST00000459947 TCEAL9Q9UHQ7 104 aa12.23□□□□□ -0.45
UBR4-208ENST00000459947 MLLT1Q03111 559 aaPredicted RBP12.23□□□□□ -0.45
UBR4-208ENST00000459947 TAPT1Q6NXT6 567 aa12.23□□□□□ -0.45
UBR4-208ENST00000459947 PHKBQ93100 1093 aa12.23□□□□□ -0.45
UBR4-208ENST00000459947 EMID1Q96A84 441 aaPredicted RBP12.23□□□□□ -0.45
UBR4-208ENST00000459947 WDR11Q9BZH6 1224 aa12.23□□□□□ -0.45
UBR4-208ENST00000459947 COL20A1Q9P218 1284 aa12.23□□□□□ -0.45
UBR4-208ENST00000459947 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.23□□□□□ -0.45
UBR4-208ENST00000459947 MRVI1Q9Y6F6 885 aa12.23□□□□□ -0.45
UBR4-208ENST00000459947 POTEFA5A3E0 1075 aa12.23□□□□□ -0.45
UBR4-208ENST00000459947 MYCLP12524 364 aaPredicted RBP12.23□□□□□ -0.45
UBR4-208ENST00000459947 HOXA13P31271 388 aaPredicted RBP12.23□□□□□ -0.45
UBR4-208ENST00000459947 SREBF1P36956 1147 aa12.23□□□□□ -0.45
UBR4-208ENST00000459947 SETQ01105 290 aaPredicted RBP12.23□□□□□ -0.45
UBR4-208ENST00000459947 FBXO16Q8IX29 292 aaPredicted RBP12.23□□□□□ -0.45
UBR4-208ENST00000459947 SHISA4Q96DD7 197 aa12.23□□□□□ -0.45
UBR4-208ENST00000459947 CYP3A4P08684 503 aa12.22□□□□□ -0.45
UBR4-208ENST00000459947 TLK2Q86UE8 772 aa12.22□□□□□ -0.45
UBR4-208ENST00000459947 INPP4AQ96PE3 977 aaPredicted RBP12.22□□□□□ -0.45
UBR4-208ENST00000459947 SENP7Q9BQF6 1050 aa12.22□□□□□ -0.45
UBR4-208ENST00000459947 MROH7Q68CQ1 1323 aa12.22□□□□□ -0.45
UBR4-208ENST00000459947 TXNP10599 105 aaKnown RBP12.22□□□□□ -0.45
UBR4-208ENST00000459947 PDIA4P13667 645 aaKnown RBP12.22□□□□□ -0.45
UBR4-208ENST00000459947 CLK2P49760 499 aaKnown RBP12.22□□□□□ -0.45
UBR4-208ENST00000459947 MOXD1Q6UVY6 613 aa12.22□□□□□ -0.45
UBR4-208ENST00000459947 FAM184AQ8NB25 1140 aa12.22□□□□□ -0.45
UBR4-208ENST00000459947 NSUN7Q8NE18 718 aaKnown RBP12.22□□□□□ -0.45
UBR4-208ENST00000459947 OR6J1Q8NGC5 347 aa12.22□□□□□ -0.45
UBR4-208ENST00000459947 TBC1D5Q92609 795 aa12.22□□□□□ -0.45
UBR4-208ENST00000459947 ALG1Q9BT22 464 aa12.22□□□□□ -0.45
UBR4-208ENST00000459947 GNEQ9Y223 722 aaKnown RBP12.22□□□□□ -0.45
UBR4-208ENST00000459947 NR2E3Q9Y5X4 410 aa12.22□□□□□ -0.45
UBR4-208ENST00000459947 KIAA1217Q5T5P2 1943 aa12.22□□□□□ -0.45
UBR4-208ENST00000459947 TAL1P17542 331 aaPredicted RBP12.22□□□□□ -0.45
UBR4-208ENST00000459947 LRRC41Q15345 812 aa12.22□□□□□ -0.45
UBR4-208ENST00000459947 PRAMEF19Q5SWL8 479 aa12.22□□□□□ -0.45
UBR4-208ENST00000459947 BLIDQ8IZY5 108 aa12.22□□□□□ -0.45
UBR4-208ENST00000459947 KLHDC9Q8NEP7 349 aa12.22□□□□□ -0.45
UBR4-208ENST00000459947 BAZ2BQ9UIF8 2168 aaKnown RBP12.22□□□□□ -0.45
UBR4-208ENST00000459947 ASTN1O14525 1302 aa12.22□□□□□ -0.45
UBR4-208ENST00000459947 ELP1O95163 1332 aa12.22□□□□□ -0.45
UBR4-208ENST00000459947 ZNF76P36508 570 aa12.21□□□□□ -0.45
UBR4-208ENST00000459947 USP11P51784 963 aa12.21□□□□□ -0.45
UBR4-208ENST00000459947 SYNRGQ9UMZ2 1314 aa12.21□□□□□ -0.45
UBR4-208ENST00000459947 ADAMTS4O75173 837 aa12.21□□□□□ -0.45
UBR4-208ENST00000459947 EN2P19622 333 aaPredicted RBP12.21□□□□□ -0.45
UBR4-208ENST00000459947 C1orf53Q5VUE5 145 aa12.21□□□□□ -0.45
UBR4-208ENST00000459947 USP17L6PQ6QN14 398 aa12.21□□□□□ -0.45
UBR4-208ENST00000459947 UBE2Q1Q7Z7E8 422 aa12.21□□□□□ -0.45
UBR4-208ENST00000459947 KATNAL1Q9BW62 490 aa12.21□□□□□ -0.45
UBR4-208ENST00000459947 UBIAD1Q9Y5Z9 338 aa12.21□□□□□ -0.45
UBR4-208ENST00000459947 SMCHD1A6NHR9 2005 aa12.21□□□□□ -0.46
UBR4-208ENST00000459947 MYCP01106 439 aaPredicted RBP12.21□□□□□ -0.46
UBR4-208ENST00000459947 GCFC2P16383 781 aaKnown RBP12.21□□□□□ -0.46
UBR4-208ENST00000459947 PTPN11Q06124 597 aaPredicted RBP12.21□□□□□ -0.46
UBR4-208ENST00000459947 GLT1D1Q96MS3 346 aa12.21□□□□□ -0.46
UBR4-208ENST00000459947 MCM3APO60318 1980 aa12.21□□□□□ -0.46
UBR4-208ENST00000459947 hCG_1642624A0A1W2PR95 340 aa12.2□□□□□ -0.46
UBR4-208ENST00000459947 ADCYAP1R1P41586 468 aa12.2□□□□□ -0.46
UBR4-208ENST00000459947 FSCN1Q16658 493 aaKnown RBP12.2□□□□□ -0.46
UBR4-208ENST00000459947 TNPO1Q92973 898 aaKnown RBP12.2□□□□□ -0.46
UBR4-208ENST00000459947 JADE2Q9NQC1 790 aa12.2□□□□□ -0.46
UBR4-208ENST00000459947 CCDC194A0A1B0GVG4 234 aa12.2□□□□□ -0.46
UBR4-208ENST00000459947 CAPN15O75808 1086 aa12.2□□□□□ -0.46
UBR4-208ENST00000459947 SMPD1P17405 629 aa12.2□□□□□ -0.46
UBR4-208ENST00000459947 KRT2P35908 639 aa12.2□□□□□ -0.46
UBR4-208ENST00000459947 ORC2Q13416 577 aaPredicted RBP12.2□□□□□ -0.46
UBR4-208ENST00000459947 NONOQ15233 471 aaKnown RBP eCLIP12.2□□□□□ -0.46
UBR4-208ENST00000459947 CCDC62Q6P9F0 684 aa12.2□□□□□ -0.46
UBR4-208ENST00000459947 SEPT14Q6ZU15 432 aa12.2□□□□□ -0.46
UBR4-208ENST00000459947 SPATA31C2B4DYI2 1134 aa12.2□□□□□ -0.46
UBR4-208ENST00000459947 TLR3O15455 904 aaKnown RBP12.2□□□□□ -0.46
UBR4-208ENST00000459947 C6orf222P0C671 652 aaPredicted RBP12.2□□□□□ -0.46
UBR4-208ENST00000459947 COL6A1P12109 1028 aa12.2□□□□□ -0.46
UBR4-208ENST00000459947 UBE2SQ16763 222 aa12.2□□□□□ -0.46
UBR4-208ENST00000459947 DHX37Q8IY37 1157 aaKnown RBP12.2□□□□□ -0.46
UBR4-208ENST00000459947 MXRA8Q9BRK3 442 aa12.2□□□□□ -0.46
UBR4-208ENST00000459947 MTG1Q9BT17 334 aaPredicted RBP12.2□□□□□ -0.46
UBR4-208ENST00000459947 PHF20Q9BVI0 1012 aa12.2□□□□□ -0.46
UBR4-208ENST00000459947 VPS54Q9P1Q0 977 aa12.2□□□□□ -0.46
UBR4-208ENST00000459947 DDX41Q9UJV9 622 aaKnown RBP12.2□□□□□ -0.46
UBR4-208ENST00000459947 NFASCO94856 1347 aa12.2□□□□□ -0.46
UBR4-208ENST00000459947 A0A0U1RQG5 324 aaPredicted RBP12.19□□□□□ -0.46
UBR4-208ENST00000459947 CIITAP33076 1130 aa12.19□□□□□ -0.46
UBR4-208ENST00000459947 ARHGAP4P98171 946 aa12.19□□□□□ -0.46
UBR4-208ENST00000459947 CCDC83Q8IWF9 413 aa12.19□□□□□ -0.46
UBR4-208ENST00000459947 SNX21Q969T3 373 aa12.19□□□□□ -0.46
UBR4-208ENST00000459947 DYNC1LI2O43237 492 aaPredicted RBP12.19□□□□□ -0.46
UBR4-208ENST00000459947 PDCP20941 246 aa12.19□□□□□ -0.46
UBR4-208ENST00000459947 CEP55Q53EZ4 464 aa12.19□□□□□ -0.46
UBR4-208ENST00000459947 GNASQ5JWF2 1037 aa12.19□□□□□ -0.46
UBR4-208ENST00000459947 EEPD1Q7L9B9 569 aa12.19□□□□□ -0.46
UBR4-208ENST00000459947 NECAB1Q8N987 351 aa12.19□□□□□ -0.46
UBR4-208ENST00000459947 C8orf76Q96K31 380 aa12.19□□□□□ -0.46
UBR4-208ENST00000459947 SDF4Q9BRK5 362 aa12.19□□□□□ -0.46
UBR4-208ENST00000459947 TYW1BQ6NUM6 668 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms