RNA–Protein interactions for RNA: ENST00000449864.5

HDLBP-223, Transcript of high density lipoprotein binding protein, human

TSL 5

Gene HDLBP, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDLBP-223	ENST00000449864	BLOC1S2	Q6QNY1	142 aa		18.23	■□□□□ 0.51
HDLBP-223	ENST00000449864	SMARCC2	Q8TAQ2	1214 aa		18.23	■□□□□ 0.51
HDLBP-223	ENST00000449864	MTG1	Q9BT17	334 aa	Predicted RBP	18.23	■□□□□ 0.51
HDLBP-223	ENST00000449864	SEZ6L	Q9BYH1	1024 aa		18.23	■□□□□ 0.51
HDLBP-223	ENST00000449864	TBX21	Q9UL17	535 aa		18.23	■□□□□ 0.51
HDLBP-223	ENST00000449864	SNX14	Q9Y5W7	946 aa		18.23	■□□□□ 0.51
HDLBP-223	ENST00000449864	hCG_1642624	A0A1W2PR95	340 aa		18.22	■□□□□ 0.51
HDLBP-223	ENST00000449864		A6NJR5	290 aa		18.22	■□□□□ 0.51
HDLBP-223	ENST00000449864	GOLGA8A	A7E2F4	631 aa		18.22	■□□□□ 0.51
HDLBP-223	ENST00000449864	GOLGA8B	A8MQT2	603 aa		18.22	■□□□□ 0.51
HDLBP-223	ENST00000449864	SOX1	O00570	391 aa	Predicted RBP	18.22	■□□□□ 0.51
HDLBP-223	ENST00000449864	KPNA6	O60684	536 aa		18.22	■□□□□ 0.51
HDLBP-223	ENST00000449864	FPGS	Q05932	587 aa		18.22	■□□□□ 0.51
HDLBP-223	ENST00000449864	CCDC62	Q6P9F0	684 aa		18.22	■□□□□ 0.51
HDLBP-223	ENST00000449864	IL31RA	Q8NI17	732 aa		18.22	■□□□□ 0.51
HDLBP-223	ENST00000449864	KCNB2	Q92953	911 aa		18.22	■□□□□ 0.51
HDLBP-223	ENST00000449864	BRPF3	Q9ULD4	1205 aa		18.22	■□□□□ 0.51
HDLBP-223	ENST00000449864	CNTNAP5	Q8WYK1	1306 aa		18.22	■□□□□ 0.51
HDLBP-223	ENST00000449864	ITGB8	P26012	769 aa		18.21	■□□□□ 0.51
HDLBP-223	ENST00000449864	ARHGAP1	Q07960	439 aa		18.21	■□□□□ 0.51
HDLBP-223	ENST00000449864	LRIT3	Q3SXY7	679 aa		18.21	■□□□□ 0.51
HDLBP-223	ENST00000449864	HEATR3	Q7Z4Q2	680 aa		18.21	■□□□□ 0.51
HDLBP-223	ENST00000449864	SLC43A3	Q8NBI5	491 aa		18.21	■□□□□ 0.51
HDLBP-223	ENST00000449864	LRCH3	Q96II8	777 aa		18.21	■□□□□ 0.51
HDLBP-223	ENST00000449864	GRIN2D	O15399	1336 aa		18.21	■□□□□ 0.51
HDLBP-223	ENST00000449864	FRMPD4	Q14CM0	1322 aa		18.21	■□□□□ 0.51
HDLBP-223	ENST00000449864	TRIP12	Q14669	1992 aa	Predicted RBP	18.21	■□□□□ 0.5
HDLBP-223	ENST00000449864	SCN5A	Q14524	2016 aa		18.2	■□□□□ 0.5
HDLBP-223	ENST00000449864	TIMP1	P01033	207 aa		18.2	■□□□□ 0.5
HDLBP-223	ENST00000449864	CD4	P01730	458 aa		18.2	■□□□□ 0.5
HDLBP-223	ENST00000449864	CAST	P20810	708 aa	Known RBP	18.2	■□□□□ 0.5
HDLBP-223	ENST00000449864	CHMP4BP1	P59074	171 aa		18.2	■□□□□ 0.5
HDLBP-223	ENST00000449864	FAM47C	Q5HY64	1035 aa		18.2	■□□□□ 0.5
HDLBP-223	ENST00000449864	KCNV1	Q6PIU1	500 aa		18.2	■□□□□ 0.5
HDLBP-223	ENST00000449864		Q6ZUG5	572 aa		18.2	■□□□□ 0.5
HDLBP-223	ENST00000449864	VSIG10L	Q86VR7	867 aa		18.2	■□□□□ 0.5
HDLBP-223	ENST00000449864	AFG1L	Q8WV93	481 aa		18.2	■□□□□ 0.5
HDLBP-223	ENST00000449864	PPP1R12C	Q9BZL4	782 aa		18.2	■□□□□ 0.5
HDLBP-223	ENST00000449864	DDX41	Q9UJV9	622 aa	Known RBP	18.2	■□□□□ 0.5
HDLBP-223	ENST00000449864	PIK3CD	O00329	1044 aa		18.19	■□□□□ 0.5
HDLBP-223	ENST00000449864	B4GALT4	O60513	344 aa		18.19	■□□□□ 0.5
HDLBP-223	ENST00000449864	MMP3	P08254	477 aa		18.19	■□□□□ 0.5
HDLBP-223	ENST00000449864	RPS6KB1	P23443	525 aa		18.19	■□□□□ 0.5
HDLBP-223	ENST00000449864	PSMA5	P28066	241 aa		18.19	■□□□□ 0.5
HDLBP-223	ENST00000449864	RCAN1	P53805	252 aa		18.19	■□□□□ 0.5
HDLBP-223	ENST00000449864	GNPTAB	Q3T906	1256 aa		18.19	■□□□□ 0.5
HDLBP-223	ENST00000449864	USP17L6P	Q6QN14	398 aa		18.19	■□□□□ 0.5
HDLBP-223	ENST00000449864	DHX37	Q8IY37	1157 aa	Known RBP	18.19	■□□□□ 0.5
HDLBP-223	ENST00000449864	GBF1	Q92538	1859 aa		18.19	■□□□□ 0.5
HDLBP-223	ENST00000449864	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	18.19	■□□□□ 0.5
HDLBP-223	ENST00000449864	BRF1	Q92994	677 aa		18.19	■□□□□ 0.5
HDLBP-223	ENST00000449864	ZFP91	Q96JP5	570 aa	Predicted RBP	18.19	■□□□□ 0.5
HDLBP-223	ENST00000449864	TRPV6	Q9H1D0	765 aa		18.19	■□□□□ 0.5
HDLBP-223	ENST00000449864	PSTPIP2	Q9H939	334 aa		18.19	■□□□□ 0.5
HDLBP-223	ENST00000449864	KAT6A	Q92794	2004 aa		18.18	■□□□□ 0.5
HDLBP-223	ENST00000449864	EPB41L2	O43491	1005 aa	Known RBP	18.18	■□□□□ 0.5
HDLBP-223	ENST00000449864	RGS20	O76081	388 aa		18.18	■□□□□ 0.5
HDLBP-223	ENST00000449864	METAP2	P50579	478 aa	Known RBP eCLIP	18.18	■□□□□ 0.5	2e-9	■□□□□ 8.1
HDLBP-223	ENST00000449864	APOBR	Q0VD83	1088 aa		18.18	■□□□□ 0.5
HDLBP-223	ENST00000449864	SHH	Q15465	462 aa		18.18	■□□□□ 0.5
HDLBP-223	ENST00000449864	C9orf50	Q5SZB4	431 aa		18.18	■□□□□ 0.5
HDLBP-223	ENST00000449864	TMEM199	Q8N511	208 aa		18.18	■□□□□ 0.5
HDLBP-223	ENST00000449864	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	18.18	■□□□□ 0.5
HDLBP-223	ENST00000449864	HIPK3	Q9H422	1215 aa		18.18	■□□□□ 0.5
HDLBP-223	ENST00000449864	CCDC196	A0A1B0GTZ2	297 aa		18.17	■□□□□ 0.5
HDLBP-223	ENST00000449864	MEIS2	O14770	477 aa		18.17	■□□□□ 0.5
HDLBP-223	ENST00000449864	SORBS3	O60504	671 aa		18.17	■□□□□ 0.5
HDLBP-223	ENST00000449864	STAM2	O75886	525 aa		18.17	■□□□□ 0.5
HDLBP-223	ENST00000449864	GGPS1	O95749	300 aa		18.17	■□□□□ 0.5
HDLBP-223	ENST00000449864	CYP2C18	P33260	490 aa		18.17	■□□□□ 0.5
HDLBP-223	ENST00000449864	NAPA	P54920	295 aa		18.17	■□□□□ 0.5
HDLBP-223	ENST00000449864	LAMC2	Q13753	1193 aa		18.17	■□□□□ 0.5
HDLBP-223	ENST00000449864	DGKD	Q16760	1214 aa		18.17	■□□□□ 0.5
HDLBP-223	ENST00000449864	NBPF20	Q3BBV1	942 aa		18.17	■□□□□ 0.5
HDLBP-223	ENST00000449864	MFSD5	Q6N075	450 aa		18.17	■□□□□ 0.5
HDLBP-223	ENST00000449864	PPTC7	Q8NI37	304 aa		18.17	■□□□□ 0.5
HDLBP-223	ENST00000449864	EMID1	Q96A84	441 aa	Predicted RBP	18.17	■□□□□ 0.5
HDLBP-223	ENST00000449864	SPDYE3	A6NKU9	549 aa		18.16	■□□□□ 0.5
HDLBP-223	ENST00000449864	SUPT20HL2	P0C7V6	817 aa		18.16	■□□□□ 0.5
HDLBP-223	ENST00000449864	TGFB3	P10600	412 aa		18.16	■□□□□ 0.5
HDLBP-223	ENST00000449864	UBA1	P22314	1058 aa	Known RBP	18.16	■□□□□ 0.5
HDLBP-223	ENST00000449864	PPIG	Q13427	754 aa	Known RBP eCLIP	18.16	■□□□□ 0.5	4e-34	■□□□□ 8
HDLBP-223	ENST00000449864	UBE2S	Q16763	222 aa		18.16	■□□□□ 0.5
HDLBP-223	ENST00000449864	PCNX4	Q63HM2	1172 aa		18.16	■□□□□ 0.5
HDLBP-223	ENST00000449864	WWC2	Q6AWC2	1192 aa		18.16	■□□□□ 0.5
HDLBP-223	ENST00000449864	NFRKB	Q6P4R8	1299 aa		18.16	■□□□□ 0.5
HDLBP-223	ENST00000449864	PPP1R13L	Q8WUF5	828 aa		18.16	■□□□□ 0.5
HDLBP-223	ENST00000449864	RNPC3	Q96LT9	517 aa	Known RBP	18.16	■□□□□ 0.5
HDLBP-223	ENST00000449864	EHMT1	Q9H9B1	1298 aa		18.16	■□□□□ 0.5
HDLBP-223	ENST00000449864	TRMT13	Q9NUP7	481 aa	Known RBP	18.16	■□□□□ 0.5
HDLBP-223	ENST00000449864	NOD1	Q9Y239	953 aa		18.16	■□□□□ 0.5
HDLBP-223	ENST00000449864	hCG_1984214	I3L0E3	225 aa		18.15	■□□□□ 0.5
HDLBP-223	ENST00000449864	ZNF286B	P0CG31	522 aa		18.15	■□□□□ 0.5
HDLBP-223	ENST00000449864	CSF2RA	P15509	400 aa		18.15	■□□□□ 0.5
HDLBP-223	ENST00000449864	CDC27	P30260	824 aa		18.15	■□□□□ 0.5
HDLBP-223	ENST00000449864	EPHB4	P54760	987 aa		18.15	■□□□□ 0.5
HDLBP-223	ENST00000449864	MRPS9	P82933	396 aa	Known RBP	18.15	■□□□□ 0.5
HDLBP-223	ENST00000449864	PTPN11	Q06124	597 aa	Predicted RBP	18.15	■□□□□ 0.5
HDLBP-223	ENST00000449864	CELF3	Q5SZQ8	465 aa	Known RBP	18.15	■□□□□ 0.5
HDLBP-223	ENST00000449864	PPP1R18	Q6NYC8	613 aa		18.15	■□□□□ 0.5

Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms