RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 RBM15Q96T37 977 aaKnown RBP eCLIP6.12□□□□□ -1.43
VPS29-202ENST00000447578 ANKRD34BA5PLL1 514 aa6.11□□□□□ -1.43
VPS29-202ENST00000447578 SGSM2O43147 1006 aa6.11□□□□□ -1.43
VPS29-202ENST00000447578 ITGB3P05106 788 aa6.11□□□□□ -1.43
VPS29-202ENST00000447578 GTF2F1P35269 517 aaKnown RBP eCLIP6.11□□□□□ -1.43
VPS29-202ENST00000447578 MAGEA10P43363 369 aaPredicted RBP6.11□□□□□ -1.43
VPS29-202ENST00000447578 DPH6Q7L8W6 267 aa6.11□□□□□ -1.43
VPS29-202ENST00000447578 FAM169BQ8N8A8 192 aa6.11□□□□□ -1.43
VPS29-202ENST00000447578 OR6P1Q8NGX9 317 aa6.11□□□□□ -1.43
VPS29-202ENST00000447578 COPS5Q92905 334 aa6.11□□□□□ -1.43
VPS29-202ENST00000447578 C11orf84Q9BUA3 381 aaPredicted RBP6.11□□□□□ -1.43
VPS29-202ENST00000447578 CNOT11Q9UKZ1 510 aaKnown RBP6.11□□□□□ -1.43
VPS29-202ENST00000447578 INPP5FQ9Y2H2 1132 aa6.11□□□□□ -1.43
VPS29-202ENST00000447578 EMC9Q9Y3B6 208 aa6.11□□□□□ -1.43
VPS29-202ENST00000447578 ZCCHC6Q5VYS8 1495 aaKnown RBP6.1□□□□□ -1.43
VPS29-202ENST00000447578 TRBV23OR9-2A0A075B6M9 112 aa6.1□□□□□ -1.43
VPS29-202ENST00000447578 THBDP07204 575 aa6.1□□□□□ -1.43
VPS29-202ENST00000447578 DNAJA1P31689 397 aaKnown RBP6.1□□□□□ -1.43
VPS29-202ENST00000447578 RGL3Q3MIN7 710 aa6.1□□□□□ -1.43
VPS29-202ENST00000447578 CD300LDQ6UXZ3 194 aa6.1□□□□□ -1.43
VPS29-202ENST00000447578 VPS37DQ86XT2 251 aa6.1□□□□□ -1.43
VPS29-202ENST00000447578 CPLX3Q8WVH0 158 aa6.1□□□□□ -1.43
VPS29-202ENST00000447578 SPATA32Q96LK8 384 aa6.1□□□□□ -1.43
VPS29-202ENST00000447578 DNAJC2Q99543 621 aaKnown RBP6.1□□□□□ -1.43
VPS29-202ENST00000447578 WDR26Q9H7D7 661 aa6.1□□□□□ -1.43
VPS29-202ENST00000447578 SMPD4Q9NXE4 827 aa6.1□□□□□ -1.43
VPS29-202ENST00000447578 PALD1Q9ULE6 856 aa6.1□□□□□ -1.43
VPS29-202ENST00000447578 C22orf46C9J442 243 aa6.09□□□□□ -1.43
VPS29-202ENST00000447578 THBS2P35442 1172 aa6.09□□□□□ -1.43
VPS29-202ENST00000447578 CASP7P55210 303 aa6.09□□□□□ -1.43
VPS29-202ENST00000447578 ADAM17P78536 824 aa6.09□□□□□ -1.43
VPS29-202ENST00000447578 ARID5AQ03989 594 aa6.09□□□□□ -1.43
VPS29-202ENST00000447578 CYP4F3Q08477 520 aa6.09□□□□□ -1.43
VPS29-202ENST00000447578 ETV3LQ6ZN32 361 aa6.09□□□□□ -1.43
VPS29-202ENST00000447578 BVESQ8NE79 360 aa6.09□□□□□ -1.43
VPS29-202ENST00000447578 MMP19Q99542 508 aa6.09□□□□□ -1.43
VPS29-202ENST00000447578 FPR2P25090 351 aa6.08□□□□□ -1.44
VPS29-202ENST00000447578 TBC1D10BQ4KMP7 808 aaPredicted RBP6.08□□□□□ -1.44
VPS29-202ENST00000447578 MCTP2Q6DN12 878 aa6.08□□□□□ -1.44
VPS29-202ENST00000447578 DCP2Q8IU60 420 aaKnown RBP6.08□□□□□ -1.44
VPS29-202ENST00000447578 KYQ8NBH2 561 aa6.08□□□□□ -1.44
VPS29-202ENST00000447578 FRS2Q8WU20 508 aa6.08□□□□□ -1.44
VPS29-202ENST00000447578 PPP1R14AQ96A00 147 aa6.08□□□□□ -1.44
VPS29-202ENST00000447578 GMLQ99445 158 aa6.08□□□□□ -1.44
VPS29-202ENST00000447578 APBA2Q99767 749 aa6.08□□□□□ -1.44
VPS29-202ENST00000447578 AP5M1Q9H0R1 490 aa6.08□□□□□ -1.44
VPS29-202ENST00000447578 CADPSQ9ULU8 1353 aa6.07□□□□□ -1.44
VPS29-202ENST00000447578 ARNTLO00327 626 aa6.07□□□□□ -1.44
VPS29-202ENST00000447578 RPL13P26373 211 aaKnown RBP6.07□□□□□ -1.44
VPS29-202ENST00000447578 STAT5AP42229 794 aa6.07□□□□□ -1.44
VPS29-202ENST00000447578 GJA8P48165 433 aa6.07□□□□□ -1.44
VPS29-202ENST00000447578 GTF2IRD2BQ6EKJ0 949 aa6.07□□□□□ -1.44
VPS29-202ENST00000447578 MILR1Q7Z6M3 343 aa6.07□□□□□ -1.44
VPS29-202ENST00000447578 GTF2IRD2Q86UP8 949 aa6.07□□□□□ -1.44
VPS29-202ENST00000447578 LOXL4Q96JB6 756 aa6.07□□□□□ -1.44
VPS29-202ENST00000447578 C8orf49Q96NF6 230 aa6.07□□□□□ -1.44
VPS29-202ENST00000447578 INVSQ9Y283 1065 aa6.07□□□□□ -1.44
VPS29-202ENST00000447578 NOP56O00567 594 aaKnown RBP6.06□□□□□ -1.44
VPS29-202ENST00000447578 DDX3XO00571 662 aaKnown RBP eCLIP6.06□□□□□ -1.441e-8■■□□□ 11.8
VPS29-202ENST00000447578 PLATP00750 562 aa6.06□□□□□ -1.44
VPS29-202ENST00000447578 ITGA1P56199 1179 aa6.06□□□□□ -1.44
VPS29-202ENST00000447578 MIB1Q86YT6 1006 aa6.06□□□□□ -1.44
VPS29-202ENST00000447578 TRIM59Q8IWR1 403 aa6.06□□□□□ -1.44
VPS29-202ENST00000447578 ARMC5Q96C12 935 aa6.06□□□□□ -1.44
VPS29-202ENST00000447578 MRGPRX3Q96LB0 322 aa6.06□□□□□ -1.44
VPS29-202ENST00000447578 KRTAP3-1Q9BYR8 98 aa6.06□□□□□ -1.44
VPS29-202ENST00000447578 SRRDQ9UH36 339 aa6.06□□□□□ -1.44
VPS29-202ENST00000447578 TMEFF2Q9UIK5 374 aaPredicted RBP6.06□□□□□ -1.44
VPS29-202ENST00000447578 TBX1O43435 398 aa6.05□□□□□ -1.44
VPS29-202ENST00000447578 TNFRSF1AP19438 455 aa6.05□□□□□ -1.44
VPS29-202ENST00000447578 CDK11BP21127 795 aaKnown RBP6.05□□□□□ -1.44
VPS29-202ENST00000447578 GIMAP6Q6P9H5 292 aa6.05□□□□□ -1.44
VPS29-202ENST00000447578 POMZP3Q6PJE2 187 aa6.05□□□□□ -1.44
VPS29-202ENST00000447578 CEP68Q76N32 757 aa6.05□□□□□ -1.44
VPS29-202ENST00000447578 NOP9Q86U38 636 aaKnown RBP6.05□□□□□ -1.44
VPS29-202ENST00000447578 CCDC103Q8IW40 242 aa6.05□□□□□ -1.44
VPS29-202ENST00000447578 TXNDC5Q8NBS9 432 aaKnown RBP6.05□□□□□ -1.44
VPS29-202ENST00000447578 NPLOC4Q8TAT6 608 aa6.05□□□□□ -1.44
VPS29-202ENST00000447578 SEC14L1Q92503 715 aa6.05□□□□□ -1.44
VPS29-202ENST00000447578 ANAPC16Q96DE5 110 aa6.05□□□□□ -1.44
VPS29-202ENST00000447578 NKX2-4Q9H2Z4 354 aa6.05□□□□□ -1.44
VPS29-202ENST00000447578 CYP26B1Q9NR63 512 aa6.05□□□□□ -1.44
VPS29-202ENST00000447578 CDK11AQ9UQ88 783 aaPredicted RBP6.05□□□□□ -1.44
VPS29-202ENST00000447578 MROH6A6NGR9 719 aa6.04□□□□□ -1.44
VPS29-202ENST00000447578 BCL6P41182 706 aa6.04□□□□□ -1.44
VPS29-202ENST00000447578 ZXDAP98168 799 aa6.04□□□□□ -1.44
VPS29-202ENST00000447578 RBL2Q08999 1139 aa6.04□□□□□ -1.44
VPS29-202ENST00000447578 KIAA2012Q0VF49 1180 aa6.04□□□□□ -1.44
VPS29-202ENST00000447578 CR1LQ2VPA4 569 aa6.04□□□□□ -1.44
VPS29-202ENST00000447578 CCDC144BQ3MJ40 725 aa6.04□□□□□ -1.44
VPS29-202ENST00000447578 PRR31Q5SQ13 230 aa6.04□□□□□ -1.44
VPS29-202ENST00000447578 SOGA3Q5TF21 947 aa6.04□□□□□ -1.44
VPS29-202ENST00000447578 CPZQ66K79 652 aa6.04□□□□□ -1.44
VPS29-202ENST00000447578 LIMS2Q7Z4I7 341 aa6.04□□□□□ -1.44
VPS29-202ENST00000447578 NLRP10Q86W26 655 aa6.04□□□□□ -1.44
VPS29-202ENST00000447578 CRACR2BQ8N4Y2 399 aaPredicted RBP6.04□□□□□ -1.44
VPS29-202ENST00000447578 PMFBP1Q8TBY8 1022 aa6.04□□□□□ -1.44
VPS29-202ENST00000447578 BTN2A2Q8WVV5 523 aa6.04□□□□□ -1.44
VPS29-202ENST00000447578 SSBP3Q9BWW4 388 aaPredicted RBP6.04□□□□□ -1.44
VPS29-202ENST00000447578 FBXL7Q9UJT9 491 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms