RNA–Protein interactions for RNA: ENST00000409588.1

NIF3L1-205, Transcript of NGG1 interacting factor 3 like 1, humanhuman

TSL 1 (best) BASIC

Gene NIF3L1, Length 1,269 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-205ENST00000409588 MAP3K13O43283 966 aa16.82■□□□□ 0.28
NIF3L1-205ENST00000409588 CDC45O75419 566 aa16.82■□□□□ 0.28
NIF3L1-205ENST00000409588 HMGB1P09429 215 aaKnown RBP16.82■□□□□ 0.28
NIF3L1-205ENST00000409588 LAMC2Q13753 1193 aa16.82■□□□□ 0.28
NIF3L1-205ENST00000409588 SYNE3Q6ZMZ3 975 aa16.82■□□□□ 0.28
NIF3L1-205ENST00000409588 VSIG10LQ86VR7 867 aa16.82■□□□□ 0.28
NIF3L1-205ENST00000409588 HOMER1Q86YM7 354 aa16.82■□□□□ 0.28
NIF3L1-205ENST00000409588 TEX2Q8IWB9 1127 aa16.82■□□□□ 0.28
NIF3L1-205ENST00000409588 COL20A1Q9P218 1284 aa16.82■□□□□ 0.28
NIF3L1-205ENST00000409588 TAF6LQ9Y6J9 622 aa16.82■□□□□ 0.28
NIF3L1-205ENST00000409588 LCTP09848 1927 aa16.82■□□□□ 0.28
NIF3L1-205ENST00000409588 LTBP2Q14767 1821 aa16.82■□□□□ 0.28
NIF3L1-205ENST00000409588 OPLAHO14841 1288 aa16.81■□□□□ 0.28
NIF3L1-205ENST00000409588 CYTH3O43739 400 aa16.81■□□□□ 0.28
NIF3L1-205ENST00000409588 PPP1R11O60927 126 aaPredicted RBP16.81■□□□□ 0.28
NIF3L1-205ENST00000409588 CASTP20810 708 aaKnown RBP16.81■□□□□ 0.28
NIF3L1-205ENST00000409588 C9orf50Q5SZB4 431 aa16.81■□□□□ 0.28
NIF3L1-205ENST00000409588 TMEM63BQ5T3F8 832 aa16.81■□□□□ 0.28
NIF3L1-205ENST00000409588 SEPT14Q6ZU15 432 aa16.81■□□□□ 0.28
NIF3L1-205ENST00000409588 SGMS1Q86VZ5 419 aa16.81■□□□□ 0.28
NIF3L1-205ENST00000409588 RPUSD2Q8IZ73 545 aaKnown RBP16.81■□□□□ 0.28
NIF3L1-205ENST00000409588 PDCD2LQ9BRP1 358 aa16.81■□□□□ 0.28
NIF3L1-205ENST00000409588 ALDH8A1Q9H2A2 487 aaPredicted RBP16.81■□□□□ 0.28
NIF3L1-205ENST00000409588 SENP2Q9HC62 589 aa16.81■□□□□ 0.28
NIF3L1-205ENST00000409588 BMP2KQ9NSY1 1161 aaPredicted RBP16.81■□□□□ 0.28
NIF3L1-205ENST00000409588 SEC63Q9UGP8 760 aaKnown RBP16.81■□□□□ 0.28
NIF3L1-205ENST00000409588 DDX41Q9UJV9 622 aaKnown RBP16.81■□□□□ 0.28
NIF3L1-205ENST00000409588 SLC12A7Q9Y666 1083 aa16.81■□□□□ 0.28
NIF3L1-205ENST00000409588 TMEM265A0A087WTH1 108 aa16.8■□□□□ 0.28
NIF3L1-205ENST00000409588 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.8■□□□□ 0.28
NIF3L1-205ENST00000409588 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.8■□□□□ 0.28
NIF3L1-205ENST00000409588 SH2B2O14492 632 aaPredicted RBP16.8■□□□□ 0.28
NIF3L1-205ENST00000409588 MYL3P08590 195 aa16.8■□□□□ 0.28
NIF3L1-205ENST00000409588 EIF2AK2P19525 551 aaKnown RBP16.8■□□□□ 0.28
NIF3L1-205ENST00000409588 DGKDQ16760 1214 aa16.8■□□□□ 0.28
NIF3L1-205ENST00000409588 XRRA1Q6P2D8 792 aa16.8■□□□□ 0.28
NIF3L1-205ENST00000409588 PSRC1Q6PGN9 363 aaPredicted RBP16.8■□□□□ 0.28
NIF3L1-205ENST00000409588 POTEGQ6S5H5 508 aa16.8■□□□□ 0.28
NIF3L1-205ENST00000409588 RNPC3Q96LT9 517 aaKnown RBP16.8■□□□□ 0.28
NIF3L1-205ENST00000409588 NEK1Q96PY6 1258 aa16.8■□□□□ 0.28
NIF3L1-205ENST00000409588 MTIF3Q9H2K0 278 aaKnown RBP16.8■□□□□ 0.28
NIF3L1-205ENST00000409588 HIPK3Q9H422 1215 aa16.8■□□□□ 0.28
NIF3L1-205ENST00000409588 MTMR10Q9NXD2 777 aa16.8■□□□□ 0.28
NIF3L1-205ENST00000409588 MRVI1Q9Y6F6 885 aa16.8■□□□□ 0.28
NIF3L1-205ENST00000409588 LRRC37A2A6NM11 1700 aa16.79■□□□□ 0.28
NIF3L1-205ENST00000409588 PIK3CDO00329 1044 aa16.79■□□□□ 0.28
NIF3L1-205ENST00000409588 PPFIA4O75335 1185 aa16.79■□□□□ 0.28
NIF3L1-205ENST00000409588 CCND2P30279 289 aa16.79■□□□□ 0.28
NIF3L1-205ENST00000409588 PGM5Q15124 567 aa16.79■□□□□ 0.28
NIF3L1-205ENST00000409588 LY6KQ17RY6 165 aa16.79■□□□□ 0.28
NIF3L1-205ENST00000409588 DHX32Q7L7V1 743 aaKnown RBP16.79■□□□□ 0.28
NIF3L1-205ENST00000409588 FANCBQ8NB91 859 aa16.79■□□□□ 0.28
NIF3L1-205ENST00000409588 CUL5Q93034 780 aa16.79■□□□□ 0.28
NIF3L1-205ENST00000409588 STXBP5LQ9Y2K9 1186 aa16.79■□□□□ 0.28
NIF3L1-205ENST00000409588 MYH6P13533 1939 aa16.78■□□□□ 0.28
NIF3L1-205ENST00000409588 B4GALT4O60513 344 aa16.78■□□□□ 0.28
NIF3L1-205ENST00000409588 ARIH2O95376 493 aa16.78■□□□□ 0.28
NIF3L1-205ENST00000409588 PFKMP08237 780 aa16.78■□□□□ 0.28
NIF3L1-205ENST00000409588 PSMC6P62333 389 aa16.78■□□□□ 0.28
NIF3L1-205ENST00000409588 ARHGAP1Q07960 439 aa16.78■□□□□ 0.28
NIF3L1-205ENST00000409588 SLC35G1Q2M3R5 365 aa16.78■□□□□ 0.28
NIF3L1-205ENST00000409588 NBPF20Q3BBV1 942 aa16.78■□□□□ 0.28
NIF3L1-205ENST00000409588 GNPTABQ3T906 1256 aa16.78■□□□□ 0.28
NIF3L1-205ENST00000409588 ZNF697Q5TEC3 545 aa16.78■□□□□ 0.28
NIF3L1-205ENST00000409588 MAMSTRQ6ZN01 415 aa16.78■□□□□ 0.28
NIF3L1-205ENST00000409588 SESTD1Q86VW0 696 aa16.78■□□□□ 0.28
NIF3L1-205ENST00000409588 DHX37Q8IY37 1157 aaKnown RBP16.78■□□□□ 0.28
NIF3L1-205ENST00000409588 PPTC7Q8NI37 304 aa16.78■□□□□ 0.28
NIF3L1-205ENST00000409588 KATNAL1Q9BW62 490 aa16.78■□□□□ 0.28
NIF3L1-205ENST00000409588 TRPV6Q9H1D0 765 aa16.78■□□□□ 0.28
NIF3L1-205ENST00000409588 IL23AQ9NPF7 189 aa16.78■□□□□ 0.28
NIF3L1-205ENST00000409588 EPB41L2O43491 1005 aaKnown RBP16.77■□□□□ 0.28
NIF3L1-205ENST00000409588 FGBP02675 491 aa16.77■□□□□ 0.28
NIF3L1-205ENST00000409588 MYCLP12524 364 aaPredicted RBP16.77■□□□□ 0.28
NIF3L1-205ENST00000409588 CSF2RAP15509 400 aa16.77■□□□□ 0.28
NIF3L1-205ENST00000409588 HOXA13P31271 388 aaPredicted RBP16.77■□□□□ 0.28
NIF3L1-205ENST00000409588 RCAN1P53805 252 aa16.77■□□□□ 0.28
NIF3L1-205ENST00000409588 EPHB4P54760 987 aa16.77■□□□□ 0.28
NIF3L1-205ENST00000409588 EXOSC10Q01780 885 aaKnown RBP16.77■□□□□ 0.28
NIF3L1-205ENST00000409588 TMEM240Q5SV17 173 aa16.77■□□□□ 0.28
NIF3L1-205ENST00000409588 AFG1LQ8WV93 481 aa16.77■□□□□ 0.28
NIF3L1-205ENST00000409588 COPS5Q92905 334 aa16.77■□□□□ 0.28
NIF3L1-205ENST00000409588 NOC4LQ9BVI4 516 aaKnown RBP16.77■□□□□ 0.28
NIF3L1-205ENST00000409588 RBM28Q9NW13 759 aaKnown RBP16.77■□□□□ 0.28
NIF3L1-205ENST00000409588 LAMA2P24043 3122 aaKnown RBP16.76■□□□□ 0.27
NIF3L1-205ENST00000409588 PARNO95453 639 aaKnown RBP16.76■□□□□ 0.27
NIF3L1-205ENST00000409588 NEFLP07196 543 aa16.76■□□□□ 0.27
NIF3L1-205ENST00000409588 MMP3P08254 477 aa16.76■□□□□ 0.27
NIF3L1-205ENST00000409588 PTGS1P23219 599 aa16.76■□□□□ 0.27
NIF3L1-205ENST00000409588 CYP2C18P33260 490 aa16.76■□□□□ 0.27
NIF3L1-205ENST00000409588 RFC2P35250 354 aa16.76■□□□□ 0.27
NIF3L1-205ENST00000409588 BFSP2Q13515 415 aa16.76■□□□□ 0.27
NIF3L1-205ENST00000409588 RASIP1Q5U651 963 aa16.76■□□□□ 0.27
NIF3L1-205ENST00000409588 MYSM1Q5VVJ2 828 aa16.76■□□□□ 0.27
NIF3L1-205ENST00000409588 C16orf59Q7L2K0 433 aa16.76■□□□□ 0.27
NIF3L1-205ENST00000409588 FCHSD1Q86WN1 690 aa16.76■□□□□ 0.27
NIF3L1-205ENST00000409588 RETREG2Q8NC44 543 aa16.76■□□□□ 0.27
NIF3L1-205ENST00000409588 SMARCC2Q8TAQ2 1214 aa16.76■□□□□ 0.27
NIF3L1-205ENST00000409588 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.76■□□□□ 0.271e-7■□□□□ 9.6
NIF3L1-205ENST00000409588 PPP1R12CQ9BZL4 782 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 154.9 ms