RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 RASAL3Q86YV0 1011 aa30.28■■■□□ 2.44
MSX1-201ENST00000382723 SMC1BQ8NDV3 1235 aa30.28■■■□□ 2.44
MSX1-201ENST00000382723 RASSF8Q8NHQ8 419 aa30.28■■■□□ 2.44
MSX1-201ENST00000382723 ETNPPLQ8TBG4 499 aa30.28■■■□□ 2.44
MSX1-201ENST00000382723 PCDHA12Q9UN75 941 aa30.28■■■□□ 2.44
MSX1-201ENST00000382723 IGLV3-22A0A075B6J6 115 aa30.28■■■□□ 2.44
MSX1-201ENST00000382723 KARSQ15046 597 aaKnown RBP30.28■■■□□ 2.44
MSX1-201ENST00000382723 ZRSR1Q15695 479 aaKnown RBP30.28■■■□□ 2.44
MSX1-201ENST00000382723 ARHGEF16Q5VV41 709 aa30.28■■■□□ 2.44
MSX1-201ENST00000382723 ANKRD23Q86SG2 305 aa30.28■■■□□ 2.44
MSX1-201ENST00000382723 SMCR8Q8TEV9 937 aaPredicted RBP30.28■■■□□ 2.44
MSX1-201ENST00000382723 LRWD1Q9UFC0 647 aa30.28■■■□□ 2.44
MSX1-201ENST00000382723 RABGAP1Q9Y3P9 1069 aa30.28■■■□□ 2.44
MSX1-201ENST00000382723 RBBP6Q7Z6E9 1792 aaKnown RBP30.27■■■□□ 2.44
MSX1-201ENST00000382723 GOLGA6L3A6NEY3 463 aa30.27■■■□□ 2.44
MSX1-201ENST00000382723 POTEMA6NI47 508 aa30.27■■■□□ 2.44
MSX1-201ENST00000382723 CEP55Q53EZ4 464 aa30.27■■■□□ 2.44
MSX1-201ENST00000382723 PLA2G4DQ86XP0 818 aa30.27■■■□□ 2.44
MSX1-201ENST00000382723 SLFN12Q8IYM2 578 aa30.27■■■□□ 2.44
MSX1-201ENST00000382723 ANKRD35Q8N283 1001 aa30.27■■■□□ 2.44
MSX1-201ENST00000382723 FAM43AQ8N2R8 423 aa30.27■■■□□ 2.44
MSX1-201ENST00000382723 RAB34Q9BZG1 259 aa30.27■■■□□ 2.44
MSX1-201ENST00000382723 TSPY26PQ9H489 355 aa30.27■■■□□ 2.44
MSX1-201ENST00000382723 PXMP2Q9NR77 195 aa30.27■■■□□ 2.44
MSX1-201ENST00000382723 MSH4O15457 936 aa30.26■■■□□ 2.44
MSX1-201ENST00000382723 ACTN4O43707 911 aaKnown RBP30.26■■■□□ 2.44
MSX1-201ENST00000382723 Q3C1V9 767 aa30.26■■■□□ 2.44
MSX1-201ENST00000382723 FBXO40Q9UH90 709 aa30.26■■■□□ 2.44
MSX1-201ENST00000382723 SLC45A1Q9Y2W3 748 aa30.26■■■□□ 2.44
MSX1-201ENST00000382723 PGM5Q15124 567 aa30.26■■■□□ 2.43
MSX1-201ENST00000382723 CABP7Q86V35 215 aa30.26■■■□□ 2.43
MSX1-201ENST00000382723 PTPN18Q99952 460 aa30.26■■■□□ 2.43
MSX1-201ENST00000382723 MYCLP12524 364 aaPredicted RBP30.25■■■□□ 2.43
MSX1-201ENST00000382723 ERCC3P19447 782 aa30.25■■■□□ 2.43
MSX1-201ENST00000382723 PDIA5Q14554 519 aa30.25■■■□□ 2.43
MSX1-201ENST00000382723 PCNX4Q63HM2 1172 aa30.25■■■□□ 2.43
MSX1-201ENST00000382723 RGMBQ6NW40 437 aa30.25■■■□□ 2.43
MSX1-201ENST00000382723 PLIN2Q99541 437 aa30.25■■■□□ 2.43
MSX1-201ENST00000382723 CCSER1Q9C0I3 900 aa30.25■■■□□ 2.43
MSX1-201ENST00000382723 FRMPD4Q14CM0 1322 aa30.25■■■□□ 2.43
MSX1-201ENST00000382723 TBX3O15119 743 aa30.24■■■□□ 2.43
MSX1-201ENST00000382723 FOXN1O15353 648 aa30.24■■■□□ 2.43
MSX1-201ENST00000382723 SASS6Q6UVJ0 657 aa30.24■■■□□ 2.43
MSX1-201ENST00000382723 CEP57L1Q8IYX8 460 aa30.24■■■□□ 2.43
MSX1-201ENST00000382723 PDCD2LQ9BRP1 358 aa30.24■■■□□ 2.43
MSX1-201ENST00000382723 FUCA2Q9BTY2 467 aa30.24■■■□□ 2.43
MSX1-201ENST00000382723 R3HDMLQ9H3Y0 253 aa30.24■■■□□ 2.43
MSX1-201ENST00000382723 PNOCQ13519 176 aa30.24■■■□□ 2.43
MSX1-201ENST00000382723 GRAMD1CQ8IYS0 662 aa30.24■■■□□ 2.43
MSX1-201ENST00000382723 IQUBQ8NA54 791 aa30.24■■■□□ 2.43
MSX1-201ENST00000382723 FAM20AQ96MK3 541 aa30.24■■■□□ 2.43
MSX1-201ENST00000382723 MXRA8Q9BRK3 442 aa30.24■■■□□ 2.43
MSX1-201ENST00000382723 SLC25A27O95847 323 aa30.23■■■□□ 2.43
MSX1-201ENST00000382723 SLFN14P0C7P3 912 aa30.23■■■□□ 2.43
MSX1-201ENST00000382723 CCDC192P0DO97 292 aa30.23■■■□□ 2.43
MSX1-201ENST00000382723 E2F4Q16254 413 aa30.23■■■□□ 2.43
MSX1-201ENST00000382723 DISC1Q9NRI5 854 aa30.23■■■□□ 2.43
MSX1-201ENST00000382723 CCDC39Q9UFE4 941 aa30.23■■■□□ 2.43
MSX1-201ENST00000382723 MEIS1O00470 390 aa30.22■■■□□ 2.43
MSX1-201ENST00000382723 ITGB5P18084 799 aa30.22■■■□□ 2.43
MSX1-201ENST00000382723 ERVK-9P63128 1117 aa30.22■■■□□ 2.43
MSX1-201ENST00000382723 ERVK-24P63145 666 aa30.22■■■□□ 2.43
MSX1-201ENST00000382723 MRPS9P82933 396 aaKnown RBP30.22■■■□□ 2.43
MSX1-201ENST00000382723 TYRO3Q06418 890 aa30.22■■■□□ 2.43
MSX1-201ENST00000382723 RRAGBQ5VZM2 374 aa30.22■■■□□ 2.43
MSX1-201ENST00000382723 PYM1Q9BRP8 204 aaKnown RBP30.22■■■□□ 2.43
MSX1-201ENST00000382723 MMTAG2Q9BU76 263 aaKnown RBP30.22■■■□□ 2.43
MSX1-201ENST00000382723 KIAA1468Q9P260 1216 aa30.22■■■□□ 2.43
MSX1-201ENST00000382723 ABT1Q9ULW3 272 aaKnown RBP30.22■■■□□ 2.43
MSX1-201ENST00000382723 FSD2A1L4K1 749 aa30.22■■■□□ 2.43
MSX1-201ENST00000382723 ARP10275 920 aa30.22■■■□□ 2.43
MSX1-201ENST00000382723 STAT6P42226 847 aa30.22■■■□□ 2.43
MSX1-201ENST00000382723 NSUN6Q8TEA1 469 aaKnown RBP30.22■■■□□ 2.43
MSX1-201ENST00000382723 GTF3C2Q8WUA4 911 aaPredicted RBP30.22■■■□□ 2.43
MSX1-201ENST00000382723 HOOK1Q9UJC3 728 aaKnown RBP30.22■■■□□ 2.43
MSX1-201ENST00000382723 TLL2Q9Y6L7 1015 aa30.22■■■□□ 2.43
MSX1-201ENST00000382723 SETQ01105 290 aaPredicted RBP30.21■■■□□ 2.43
MSX1-201ENST00000382723 KANK3Q6NY19 840 aa30.21■■■□□ 2.43
MSX1-201ENST00000382723 WDR11Q9BZH6 1224 aa30.21■■■□□ 2.43
MSX1-201ENST00000382723 MAF1Q9H063 256 aa30.21■■■□□ 2.43
MSX1-201ENST00000382723 USP25Q9UHP3 1055 aa30.21■■■□□ 2.43
MSX1-201ENST00000382723 PFASO15067 1338 aa30.2■■■□□ 2.43
MSX1-201ENST00000382723 AFMP43652 599 aa30.2■■■□□ 2.43
MSX1-201ENST00000382723 WDR78Q5VTH9 848 aa30.2■■■□□ 2.43
MSX1-201ENST00000382723 ANKRD13CQ8N6S4 541 aa30.2■■■□□ 2.43
MSX1-201ENST00000382723 A0A087WWV3 80 aa30.2■■■□□ 2.42
MSX1-201ENST00000382723 MDM2Q00987 491 aaPredicted RBP30.2■■■□□ 2.42
MSX1-201ENST00000382723 CNTN2Q02246 1040 aa30.2■■■□□ 2.42
MSX1-201ENST00000382723 POSTNQ15063 836 aa30.2■■■□□ 2.42
MSX1-201ENST00000382723 KRT79Q5XKE5 535 aa30.2■■■□□ 2.42
MSX1-201ENST00000382723 SNX29Q8TEQ0 813 aa30.2■■■□□ 2.42
MSX1-201ENST00000382723 ZNF577Q9BSK1 485 aa30.2■■■□□ 2.42
MSX1-201ENST00000382723 UBIAD1Q9Y5Z9 338 aa30.2■■■□□ 2.42
MSX1-201ENST00000382723 NR3C2P08235 984 aa30.19■■■□□ 2.42
MSX1-201ENST00000382723 PRR29P0C7W0 189 aa30.19■■■□□ 2.42
MSX1-201ENST00000382723 PLCG1P19174 1290 aa30.19■■■□□ 2.42
MSX1-201ENST00000382723 CCND2P30279 289 aa30.19■■■□□ 2.42
MSX1-201ENST00000382723 COPB2P35606 906 aa30.19■■■□□ 2.42
MSX1-201ENST00000382723 GPRC5AQ8NFJ5 357 aa30.19■■■□□ 2.42
MSX1-201ENST00000382723 CALML4Q96GE6 196 aa30.19■■■□□ 2.42
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms