RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 COLEC11Q9BWP8 271 aa10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 ZW10O43264 779 aa10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 NDUFS2O75306 463 aa10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 RNASE9P60153 205 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 CDC42EP1Q00587 391 aa10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 CNNM4Q6P4Q7 775 aa10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 C1orf112Q9NSG2 853 aa10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 DACT1Q9NYF0 836 aa10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 GYS1P13807 737 aa10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 BPIFB4P59827 614 aa10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 C6orf163Q5TEZ5 329 aa10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 GPBP1Q86WP2 473 aa10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 ANKRD44Q8N8A2 993 aa10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 NECAB1Q8N987 351 aa10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 OR6B3Q8NGW1 331 aa10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 DDX50Q9BQ39 737 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 CWC15Q9P013 229 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 ABCB11O95342 1321 aa10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 DNAJB2P25686 324 aa10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 ABCD1P33897 745 aa10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 CXCL9Q07325 125 aa10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 TADA2BQ86TJ2 420 aa10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 MROH7Q68CQ1 1323 aa10.12□□□□□ -0.79
LIMCH1-202ENST00000381753 ATP2C2O75185 946 aa10.11□□□□□ -0.79
LIMCH1-202ENST00000381753 FAM151AQ8WW52 585 aa10.11□□□□□ -0.79
LIMCH1-202ENST00000381753 TFIP11Q9UBB9 837 aaKnown RBP10.11□□□□□ -0.79
LIMCH1-202ENST00000381753 CPSF1Q10570 1443 aaKnown RBP10.11□□□□□ -0.79
LIMCH1-202ENST00000381753 ATP2A2P16615 1042 aaKnown RBP10.11□□□□□ -0.79
LIMCH1-202ENST00000381753 TTC38Q5R3I4 469 aa10.11□□□□□ -0.79
LIMCH1-202ENST00000381753 EHD2Q9NZN4 543 aa10.11□□□□□ -0.79
LIMCH1-202ENST00000381753 SUGT1Q9Y2Z0 365 aa10.11□□□□□ -0.79
LIMCH1-202ENST00000381753 PAXBP1Q9Y5B6 917 aa10.11□□□□□ -0.79
LIMCH1-202ENST00000381753 PFASO15067 1338 aa10.11□□□□□ -0.79
LIMCH1-202ENST00000381753 STAM2O75886 525 aa10.11□□□□□ -0.79
LIMCH1-202ENST00000381753 ACBD5Q5T8D3 534 aaPredicted RBP10.11□□□□□ -0.79
LIMCH1-202ENST00000381753 ARMC6Q6NXE6 501 aa10.11□□□□□ -0.79
LIMCH1-202ENST00000381753 NELFCDQ8IXH7 590 aa10.11□□□□□ -0.79
LIMCH1-202ENST00000381753 SEPT5Q99719 369 aaPredicted RBP10.11□□□□□ -0.79
LIMCH1-202ENST00000381753 OSBPL5Q9H0X9 879 aaPredicted RBP10.11□□□□□ -0.79
LIMCH1-202ENST00000381753 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.11□□□□□ -0.79
LIMCH1-202ENST00000381753 SYNCRIPO60506 623 aaKnown RBP10.11□□□□□ -0.79
LIMCH1-202ENST00000381753 KPNA6O60684 536 aa10.11□□□□□ -0.79
LIMCH1-202ENST00000381753 GTF2F1P35269 517 aaKnown RBP eCLIP10.11□□□□□ -0.79
LIMCH1-202ENST00000381753 JAK3P52333 1124 aa10.11□□□□□ -0.79
LIMCH1-202ENST00000381753 PDE1AP54750 535 aa10.11□□□□□ -0.79
LIMCH1-202ENST00000381753 PKN2Q16513 984 aaKnown RBP10.11□□□□□ -0.79
LIMCH1-202ENST00000381753 TTBK2Q6IQ55 1244 aa10.11□□□□□ -0.79
LIMCH1-202ENST00000381753 PPP4R4Q6NUP7 873 aa10.11□□□□□ -0.79
LIMCH1-202ENST00000381753 PPP1R9BQ96SB3 815 aa10.11□□□□□ -0.79
LIMCH1-202ENST00000381753 PPANQ9NQ55 473 aaKnown RBP10.11□□□□□ -0.79
LIMCH1-202ENST00000381753 PRR23AA6NEV1 266 aa10.1□□□□□ -0.79
LIMCH1-202ENST00000381753 RALAP11233 206 aa10.1□□□□□ -0.79
LIMCH1-202ENST00000381753 FKBP1BP68106 108 aa10.1□□□□□ -0.79
LIMCH1-202ENST00000381753 PPP2R2DQ66LE6 453 aa10.1□□□□□ -0.79
LIMCH1-202ENST00000381753 TEX2Q8IWB9 1127 aa10.1□□□□□ -0.79
LIMCH1-202ENST00000381753 LPAR1Q92633 364 aa10.1□□□□□ -0.79
LIMCH1-202ENST00000381753 WDR46O15213 610 aaKnown RBP10.1□□□□□ -0.79
LIMCH1-202ENST00000381753 ADORA1P30542 326 aa10.1□□□□□ -0.79
LIMCH1-202ENST00000381753 LRMPQ12912 555 aa10.1□□□□□ -0.79
LIMCH1-202ENST00000381753 EFCAB13Q8IY85 973 aa10.1□□□□□ -0.79
LIMCH1-202ENST00000381753 GPKOWQ92917 476 aaPredicted RBP eCLIP10.1□□□□□ -0.79
LIMCH1-202ENST00000381753 TARBP1Q13395 1621 aaKnown RBP10.1□□□□□ -0.79
LIMCH1-202ENST00000381753 PHLPP2Q6ZVD8 1323 aa10.1□□□□□ -0.79
LIMCH1-202ENST00000381753 PRR36Q9H6K5 1346 aa10.1□□□□□ -0.79
LIMCH1-202ENST00000381753 PCP11498 1178 aaKnown RBP10.1□□□□□ -0.79
LIMCH1-202ENST00000381753 SKIP12755 728 aa10.1□□□□□ -0.79
LIMCH1-202ENST00000381753 MDM2Q00987 491 aaPredicted RBP10.1□□□□□ -0.79
LIMCH1-202ENST00000381753 CABP7Q86V35 215 aa10.1□□□□□ -0.79
LIMCH1-202ENST00000381753 ZNF668Q96K58 619 aaPredicted RBP10.1□□□□□ -0.79
LIMCH1-202ENST00000381753 PLCD4Q9BRC7 762 aa10.1□□□□□ -0.79
LIMCH1-202ENST00000381753 MXD3Q9BW11 206 aa10.1□□□□□ -0.79
LIMCH1-202ENST00000381753 ZSCAN16Q9H4T2 348 aaPredicted RBP10.1□□□□□ -0.79
LIMCH1-202ENST00000381753 CYP2C9P11712 490 aa10.1□□□□□ -0.79
LIMCH1-202ENST00000381753 ITGA4P13612 1032 aa10.1□□□□□ -0.79
LIMCH1-202ENST00000381753 FAM193AP78312 1265 aa10.1□□□□□ -0.79
LIMCH1-202ENST00000381753 PPIGQ13427 754 aaKnown RBP eCLIP10.1□□□□□ -0.79
LIMCH1-202ENST00000381753 LMBR1Q8WVP7 490 aa10.1□□□□□ -0.79
LIMCH1-202ENST00000381753 CCDC127Q96BQ5 260 aa10.1□□□□□ -0.79
LIMCH1-202ENST00000381753 SCUBE2Q9NQ36 999 aa10.1□□□□□ -0.79
LIMCH1-202ENST00000381753 SRPRBQ9Y5M8 271 aaKnown RBP10.1□□□□□ -0.79
LIMCH1-202ENST00000381753 VAMP4O75379 141 aa10.1□□□□□ -0.79
LIMCH1-202ENST00000381753 SLC12A2P55011 1212 aa10.1□□□□□ -0.79
LIMCH1-202ENST00000381753 PSPC1Q8WXF1 523 aaKnown RBP10.1□□□□□ -0.79
LIMCH1-202ENST00000381753 CFAP57Q96MR6 1250 aa10.1□□□□□ -0.79
LIMCH1-202ENST00000381753 IFIH1Q9BYX4 1025 aaKnown RBP10.1□□□□□ -0.79
LIMCH1-202ENST00000381753 NCDNQ9UBB6 729 aa10.1□□□□□ -0.79
LIMCH1-202ENST00000381753 CHL1O00533 1208 aa10.09□□□□□ -0.79
LIMCH1-202ENST00000381753 RNASEH1O60930 286 aaKnown RBP10.09□□□□□ -0.79
LIMCH1-202ENST00000381753 CIAO1O76071 339 aa10.09□□□□□ -0.79
LIMCH1-202ENST00000381753 AKR1A1P14550 325 aa10.09□□□□□ -0.79
LIMCH1-202ENST00000381753 TMEM62Q0P6H9 643 aa10.09□□□□□ -0.79
LIMCH1-202ENST00000381753 BSPRYQ5W0U4 402 aa10.09□□□□□ -0.79
LIMCH1-202ENST00000381753 FOXR1Q6PIV2 292 aa10.09□□□□□ -0.79
LIMCH1-202ENST00000381753 ZNF654Q8IZM8 581 aa10.09□□□□□ -0.79
LIMCH1-202ENST00000381753 NLGN2Q8NFZ4 835 aa10.09□□□□□ -0.79
LIMCH1-202ENST00000381753 NXF1Q9UBU9 619 aaKnown RBP10.09□□□□□ -0.79
LIMCH1-202ENST00000381753 MROH7-TTC4A0A0A0MT08 1334 aa10.09□□□□□ -0.79
LIMCH1-202ENST00000381753 XYLBO75191 536 aa10.09□□□□□ -0.79
LIMCH1-202ENST00000381753 ASMTLO95671 621 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 92.8 ms