RNA–Protein interactions for RNA: ENST00000343200.9

VCAN-203, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 9,455 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-203ENST00000343200 IPO5O00410 1097 aaKnown RBP6.66□□□□□ -1.34
VCAN-203ENST00000343200 FOSL2P15408 326 aa6.66□□□□□ -1.34
VCAN-203ENST00000343200 TNFAIP3P21580 790 aa6.66□□□□□ -1.34
VCAN-203ENST00000343200 CTCFP49711 727 aaPredicted RBP6.66□□□□□ -1.34
VCAN-203ENST00000343200 ST5P78524 1137 aa6.66□□□□□ -1.34
VCAN-203ENST00000343200 MKRN3Q13064 507 aaKnown RBP6.66□□□□□ -1.34
VCAN-203ENST00000343200 NUGGCQ68CJ6 796 aa6.66□□□□□ -1.34
VCAN-203ENST00000343200 SV2BQ7L1I2 683 aa6.66□□□□□ -1.34
VCAN-203ENST00000343200 DPH6Q7L8W6 267 aa6.66□□□□□ -1.34
VCAN-203ENST00000343200 SSH1Q8WYL5 1049 aa6.66□□□□□ -1.34
VCAN-203ENST00000343200 BRF1Q92994 677 aa6.66□□□□□ -1.34
VCAN-203ENST00000343200 SIRT1Q96EB6 747 aa6.66□□□□□ -1.34
VCAN-203ENST00000343200 SLF1Q9BQI6 1058 aa6.66□□□□□ -1.34
VCAN-203ENST00000343200 FAM192AQ9GZU8 254 aa6.66□□□□□ -1.34
VCAN-203ENST00000343200 CARD9Q9H257 536 aa6.66□□□□□ -1.34
VCAN-203ENST00000343200 TAF4O00268 1085 aa6.66□□□□□ -1.34
VCAN-203ENST00000343200 DNALI1O14645 258 aaPredicted RBP6.66□□□□□ -1.34
VCAN-203ENST00000343200 TRIM13O60858 407 aa6.66□□□□□ -1.34
VCAN-203ENST00000343200 RGS9BPQ6ZS82 235 aa6.66□□□□□ -1.34
VCAN-203ENST00000343200 CATSPER3Q86XQ3 398 aa6.66□□□□□ -1.34
VCAN-203ENST00000343200 ESR2Q92731 530 aa6.66□□□□□ -1.34
VCAN-203ENST00000343200 NARS2Q96I59 477 aaKnown RBP6.66□□□□□ -1.34
VCAN-203ENST00000343200 FAM167BQ9BTA0 163 aa6.66□□□□□ -1.34
VCAN-203ENST00000343200 CD209Q9NNX6 404 aa6.66□□□□□ -1.34
VCAN-203ENST00000343200 A0A1B0GVL5 298 aa6.65□□□□□ -1.34
VCAN-203ENST00000343200 TBC1D4O60343 1298 aa6.65□□□□□ -1.34
VCAN-203ENST00000343200 SDSP20132 328 aa6.65□□□□□ -1.34
VCAN-203ENST00000343200 RUNX1T1Q06455 604 aa6.65□□□□□ -1.34
VCAN-203ENST00000343200 SPARCL1Q14515 664 aa6.65□□□□□ -1.34
VCAN-203ENST00000343200 CCDC142Q17RM4 750 aa6.65□□□□□ -1.34
VCAN-203ENST00000343200 BEND3Q5T5X7 828 aa6.65□□□□□ -1.34
VCAN-203ENST00000343200 RCSD1Q6JBY9 416 aa6.65□□□□□ -1.34
VCAN-203ENST00000343200 ZSCAN29Q8IWY8 852 aaPredicted RBP6.65□□□□□ -1.34
VCAN-203ENST00000343200 TNIP2Q8NFZ5 429 aa6.65□□□□□ -1.34
VCAN-203ENST00000343200 XPO4Q9C0E2 1151 aaKnown RBP6.65□□□□□ -1.34
VCAN-203ENST00000343200 DYSFO75923 2080 aa6.65□□□□□ -1.34
VCAN-203ENST00000343200 P4HA2O15460 535 aa6.65□□□□□ -1.34
VCAN-203ENST00000343200 MYL6BP14649 208 aa6.65□□□□□ -1.34
VCAN-203ENST00000343200 SMARCA1P28370 1054 aa6.65□□□□□ -1.34
VCAN-203ENST00000343200 C20orf194Q5TEA3 1177 aa6.65□□□□□ -1.34
VCAN-203ENST00000343200 POTEAQ6S8J7 498 aa6.65□□□□□ -1.34
VCAN-203ENST00000343200 CRNKL1Q9BZJ0 848 aaKnown RBP6.65□□□□□ -1.34
VCAN-203ENST00000343200 EPN3Q9H201 632 aa6.65□□□□□ -1.34
VCAN-203ENST00000343200 FRMD4AQ9P2Q2 1039 aaPredicted RBP6.65□□□□□ -1.34
VCAN-203ENST00000343200 SUCLA2Q9P2R7 463 aaPredicted RBP6.65□□□□□ -1.34
VCAN-203ENST00000343200 HPS5Q9UPZ3 1129 aa6.65□□□□□ -1.34
VCAN-203ENST00000343200 NOP56O00567 594 aaKnown RBP6.65□□□□□ -1.34
VCAN-203ENST00000343200 EFCAB2Q5VUJ9 269 aa6.65□□□□□ -1.34
VCAN-203ENST00000343200 TBC1D1Q86TI0 1168 aaPredicted RBP6.65□□□□□ -1.34
VCAN-203ENST00000343200 PDCD10Q9BUL8 212 aa6.65□□□□□ -1.34
VCAN-203ENST00000343200 ZMYND12Q9H0C1 365 aa6.65□□□□□ -1.34
VCAN-203ENST00000343200 OLFML3Q9NRN5 406 aa6.65□□□□□ -1.34
VCAN-203ENST00000343200 STX7O15400 261 aaKnown RBP6.65□□□□□ -1.34
VCAN-203ENST00000343200 CALM1P0DP23 149 aa6.65□□□□□ -1.34
VCAN-203ENST00000343200 CALM2P0DP24 149 aa6.65□□□□□ -1.34
VCAN-203ENST00000343200 CALM3P0DP25 149 aa6.65□□□□□ -1.34
VCAN-203ENST00000343200 NELFBQ8WX92 580 aa6.65□□□□□ -1.34
VCAN-203ENST00000343200 HAUS4Q9H6D7 363 aa6.65□□□□□ -1.34
VCAN-203ENST00000343200 VWA3AA6NCI4 1184 aa6.65□□□□□ -1.35
VCAN-203ENST00000343200 STAM2O75886 525 aa6.65□□□□□ -1.35
VCAN-203ENST00000343200 YY1P25490 414 aa6.65□□□□□ -1.35
VCAN-203ENST00000343200 SNAP25P60880 206 aa6.65□□□□□ -1.35
VCAN-203ENST00000343200 EP400NLQ6ZTU2 488 aa6.65□□□□□ -1.35
VCAN-203ENST00000343200 PRPF38AQ8NAV1 312 aaKnown RBP6.65□□□□□ -1.35
VCAN-203ENST00000343200 FAM212AQ96EL1 285 aa6.65□□□□□ -1.35
VCAN-203ENST00000343200 ESYT1Q9BSJ8 1104 aa6.65□□□□□ -1.35
VCAN-203ENST00000343200 ATP8A1Q9Y2Q0 1164 aa6.65□□□□□ -1.35
VCAN-203ENST00000343200 PTPN22Q9Y2R2 807 aa6.65□□□□□ -1.35
VCAN-203ENST00000343200 KCNJ18B7U540 433 aa6.65□□□□□ -1.35
VCAN-203ENST00000343200 PAPOLAP51003 745 aaKnown RBP6.65□□□□□ -1.35
VCAN-203ENST00000343200 KLHL30Q0D2K2 578 aa6.65□□□□□ -1.35
VCAN-203ENST00000343200 KCNJ12Q14500 433 aa6.65□□□□□ -1.35
VCAN-203ENST00000343200 ATP11CQ8NB49 1132 aa6.65□□□□□ -1.35
VCAN-203ENST00000343200 DTX3LQ8TDB6 740 aa6.65□□□□□ -1.35
VCAN-203ENST00000343200 LARP6Q9BRS8 491 aaKnown RBP6.65□□□□□ -1.35
VCAN-203ENST00000343200 DESI2Q9BSY9 194 aa6.65□□□□□ -1.35
VCAN-203ENST00000343200 NT5C3AQ9H0P0 336 aa6.65□□□□□ -1.35
VCAN-203ENST00000343200 TRIM39Q9HCM9 518 aa6.65□□□□□ -1.35
VCAN-203ENST00000343200 SLC13A4Q9UKG4 626 aa6.65□□□□□ -1.35
VCAN-203ENST00000343200 NCOA1Q15788 1441 aa6.65□□□□□ -1.35
VCAN-203ENST00000343200 KIAA1107Q9UPP5 1409 aa6.65□□□□□ -1.35
VCAN-203ENST00000343200 EPRSP07814 1512 aaKnown RBP6.65□□□□□ -1.35
VCAN-203ENST00000343200 PITPNM2Q9BZ72 1349 aa6.65□□□□□ -1.35
VCAN-203ENST00000343200 C16orf96A6NNT2 1141 aa6.65□□□□□ -1.35
VCAN-203ENST00000343200 TOMM70O94826 608 aa6.65□□□□□ -1.35
VCAN-203ENST00000343200 IFIT1P09914 478 aaKnown RBP6.65□□□□□ -1.35
VCAN-203ENST00000343200 IFIT5Q13325 482 aaKnown RBP6.65□□□□□ -1.35
VCAN-203ENST00000343200 RAPGEF5Q92565 580 aa6.65□□□□□ -1.35
VCAN-203ENST00000343200 ATP6V1E2Q96A05 226 aa6.65□□□□□ -1.35
VCAN-203ENST00000343200 AGBL1Q96MI9 1066 aa6.65□□□□□ -1.35
VCAN-203ENST00000343200 SHROOM2Q13796 1616 aa6.65□□□□□ -1.35
VCAN-203ENST00000343200 ANKRD50Q9ULJ7 1429 aa6.64□□□□□ -1.35
VCAN-203ENST00000343200 TMEM247A6NEH6 219 aa6.64□□□□□ -1.35
VCAN-203ENST00000343200 PGRMC1O00264 195 aaKnown RBP6.64□□□□□ -1.35
VCAN-203ENST00000343200 LCA5LO95447 670 aa6.64□□□□□ -1.35
VCAN-203ENST00000343200 IFNB1P01574 187 aa6.64□□□□□ -1.35
VCAN-203ENST00000343200 ADKP55263 362 aaKnown RBP6.64□□□□□ -1.35
VCAN-203ENST00000343200 MED21Q13503 144 aa6.64□□□□□ -1.35
VCAN-203ENST00000343200 SLC9A5Q14940 896 aa6.64□□□□□ -1.35
VCAN-203ENST00000343200 MRGBPQ9NV56 204 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 95.4 ms