RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 ST13P50502 369 aaKnown RBP15.04■□□□□ -0
CCDC88A-201ENST00000263630 CCDC90BQ9GZT6 254 aa15.04■□□□□ -0
CCDC88A-201ENST00000263630 PSMC1P62191 440 aaKnown RBP15.04■□□□□ -0
CCDC88A-201ENST00000263630 AARS2Q5JTZ9 985 aaKnown RBP15.04■□□□□ -0
CCDC88A-201ENST00000263630 BTN2A2Q8WVV5 523 aa15.04■□□□□ -0
CCDC88A-201ENST00000263630 H7C1D1 291 aa15.04■□□□□ -0
CCDC88A-201ENST00000263630 IFNAR2P48551 515 aa15.04■□□□□ -0
CCDC88A-201ENST00000263630 EPHB1P54762 984 aa15.04■□□□□ -0
CCDC88A-201ENST00000263630 RWDD2BP57060 319 aa15.04■□□□□ -0
CCDC88A-201ENST00000263630 C20orf194Q5TEA3 1177 aa15.04■□□□□ -0
CCDC88A-201ENST00000263630 GPBP1Q86WP2 473 aa15.04■□□□□ -0
CCDC88A-201ENST00000263630 FAM178BQ8IXR5 827 aa15.04■□□□□ -0
CCDC88A-201ENST00000263630 A0A087WUV0 522 aaPredicted RBP15.03■□□□□ -0
CCDC88A-201ENST00000263630 CHGBP05060 677 aa15.03■□□□□ -0
CCDC88A-201ENST00000263630 MFAP3P55082 362 aa15.03■□□□□ -0
CCDC88A-201ENST00000263630 FAM47CQ5HY64 1035 aa15.03■□□□□ -0
CCDC88A-201ENST00000263630 FAM180AQ6UWF9 173 aa15.03■□□□□ -0
CCDC88A-201ENST00000263630 DTNBP1Q96EV8 351 aa15.03■□□□□ -0
CCDC88A-201ENST00000263630 MRPL47Q9HD33 250 aaKnown RBP15.03■□□□□ -0
CCDC88A-201ENST00000263630 ARL13BQ3SXY8 428 aa15.03■□□□□ -0
CCDC88A-201ENST00000263630 SGO2Q562F6 1265 aa15.03■□□□□ -0
CCDC88A-201ENST00000263630 KCTD6Q8NC69 237 aa15.03■□□□□ -0
CCDC88A-201ENST00000263630 ST13P5Q8NFI4 369 aaPredicted RBP15.03■□□□□ -0
CCDC88A-201ENST00000263630 SPATA17Q96L03 361 aa15.03■□□□□ -0
CCDC88A-201ENST00000263630 PAPOLAP51003 745 aaKnown RBP15.03■□□□□ -0
CCDC88A-201ENST00000263630 NOSTRINQ8IVI9 506 aa15.03■□□□□ -0
CCDC88A-201ENST00000263630 GINS4Q9BRT9 223 aa15.03■□□□□ -0
CCDC88A-201ENST00000263630 PAPOLBQ9NRJ5 636 aaKnown RBP15.03■□□□□ -0
CCDC88A-201ENST00000263630 LUZP2Q86TE4 346 aa15.03■□□□□ -0
CCDC88A-201ENST00000263630 CADPS2Q86UW7 1296 aa15.03■□□□□ -0
CCDC88A-201ENST00000263630 DZIP3Q86Y13 1208 aaKnown RBP15.03■□□□□ -0
CCDC88A-201ENST00000263630 NELFCDQ8IXH7 590 aa15.03■□□□□ -0
CCDC88A-201ENST00000263630 TADA1Q96BN2 335 aa15.03■□□□□ -0
CCDC88A-201ENST00000263630 TFDP1Q14186 410 aa15.03■□□□□ -0
CCDC88A-201ENST00000263630 ANO5Q75V66 913 aa15.03■□□□□ -0
CCDC88A-201ENST00000263630 RABGGTAQ92696 567 aa15.03■□□□□ -0
CCDC88A-201ENST00000263630 TMEM60Q9H2L4 133 aa15.03■□□□□ -0
CCDC88A-201ENST00000263630 KIF14Q15058 1648 aa15.03■□□□□ -0
CCDC88A-201ENST00000263630 BUB1O43683 1085 aa15.03■□□□□ -0
CCDC88A-201ENST00000263630 POLGP54098 1239 aaPredicted RBP15.03■□□□□ -0
CCDC88A-201ENST00000263630 PABPC4Q13310 644 aaKnown RBP eCLIP15.03■□□□□ -06e-6■■■■■ 28.1
CCDC88A-201ENST00000263630 RDH13Q8NBN7 331 aa15.03■□□□□ -0
CCDC88A-201ENST00000263630 PCDHB4Q9Y5E5 795 aa15.03■□□□□ -0
CCDC88A-201ENST00000263630 GJA3Q9Y6H8 435 aa15.03■□□□□ -0
CCDC88A-201ENST00000263630 GYG2O15488 501 aa15.03■□□□□ -0
CCDC88A-201ENST00000263630 CCNYQ8ND76 341 aa15.03■□□□□ -0
CCDC88A-201ENST00000263630 GEMIN8Q9NWZ8 242 aaKnown RBP15.03■□□□□ -0
CCDC88A-201ENST00000263630 MBD4O95243 580 aa15.02■□□□□ -0
CCDC88A-201ENST00000263630 FAM160B1Q5W0V3 765 aa15.02■□□□□ -0
CCDC88A-201ENST00000263630 GDAP1Q8TB36 358 aa15.02■□□□□ -0
CCDC88A-201ENST00000263630 SNX25Q9H3E2 840 aa15.02■□□□□ -0
CCDC88A-201ENST00000263630 ARHGEF6Q15052 776 aa15.02■□□□□ -0
CCDC88A-201ENST00000263630 WDR75Q8IWA0 830 aaKnown RBP15.02■□□□□ -0
CCDC88A-201ENST00000263630 MAGEF1Q9HAY2 307 aa15.02■□□□□ -0
CCDC88A-201ENST00000263630 EXOC1LA0A1B0GW35 172 aa15.02■□□□□ -0
CCDC88A-201ENST00000263630 RIMBP2O15034 1052 aa15.02■□□□□ -0
CCDC88A-201ENST00000263630 RAPGEF5Q92565 580 aa15.02■□□□□ -0
CCDC88A-201ENST00000263630 PSMA4P25789 261 aaKnown RBP15.02□□□□□ -0.01
CCDC88A-201ENST00000263630 PLEKHA4Q9H4M7 779 aa15.02□□□□□ -0.01
CCDC88A-201ENST00000263630 PHF8Q9UPP1 1060 aa15.02□□□□□ -0.01
CCDC88A-201ENST00000263630 GOLGA8MH3BSY2 632 aa15.02□□□□□ -0.01
CCDC88A-201ENST00000263630 DEFA1P59665 94 aa15.02□□□□□ -0.01
CCDC88A-201ENST00000263630 DEFA3P59666 94 aa15.02□□□□□ -0.01
CCDC88A-201ENST00000263630 TUBGCP3Q96CW5 907 aa15.02□□□□□ -0.01
CCDC88A-201ENST00000263630 ATG3Q9NT62 314 aa15.02□□□□□ -0.01
CCDC88A-201ENST00000263630 TMEM191CA6NGB0 347 aa15.02□□□□□ -0.01
CCDC88A-201ENST00000263630 KCNA1Q09470 495 aa15.02□□□□□ -0.01
CCDC88A-201ENST00000263630 TCP11X2Q5H9J9 407 aa15.02□□□□□ -0.01
CCDC88A-201ENST00000263630 PPM1KQ8N3J5 372 aa15.02□□□□□ -0.01
CCDC88A-201ENST00000263630 C19orf60Q96EN9 201 aa15.02□□□□□ -0.01
CCDC88A-201ENST00000263630 GPBP1L1Q9HC44 474 aaPredicted RBP15.02□□□□□ -0.01
CCDC88A-201ENST00000263630 DMRT2Q9Y5R5 561 aa15.02□□□□□ -0.01
CCDC88A-201ENST00000263630 V9GY48 417 aaPredicted RBP15.02□□□□□ -0.01
CCDC88A-201ENST00000263630 SYNJ2BP-COX16A0A087WUM0 186 aa15.02□□□□□ -0.01
CCDC88A-201ENST00000263630 ECEL1O95672 775 aa15.02□□□□□ -0.01
CCDC88A-201ENST00000263630 IMPDH2P12268 514 aa15.02□□□□□ -0.01
CCDC88A-201ENST00000263630 HACD3Q9P035 362 aa15.02□□□□□ -0.01
CCDC88A-201ENST00000263630 COX16Q9P0S2 106 aa15.02□□□□□ -0.01
CCDC88A-201ENST00000263630 ZMYND8Q9ULU4 1186 aaPredicted RBP15.02□□□□□ -0.01
CCDC88A-201ENST00000263630 WDR7Q9Y4E6 1490 aa15.02□□□□□ -0.01
CCDC88A-201ENST00000263630 ARIH2O95376 493 aa15.01□□□□□ -0.01
CCDC88A-201ENST00000263630 CFBP00751 764 aa15.01□□□□□ -0.01
CCDC88A-201ENST00000263630 DLATP10515 647 aaKnown RBP15.01□□□□□ -0.01
CCDC88A-201ENST00000263630 RARS2Q5T160 578 aaKnown RBP15.01□□□□□ -0.01
CCDC88A-201ENST00000263630 TRAF7Q6Q0C0 670 aa15.01□□□□□ -0.01
CCDC88A-201ENST00000263630 APOBEC2Q9Y235 224 aaKnown RBP15.01□□□□□ -0.01
CCDC88A-201ENST00000263630 RANBP1P43487 201 aa15.01□□□□□ -0.01
CCDC88A-201ENST00000263630 GUCY1A3Q02108 690 aa15.01□□□□□ -0.01
CCDC88A-201ENST00000263630 ADCY2Q08462 1091 aa15.01□□□□□ -0.01
CCDC88A-201ENST00000263630 ZFP42Q96MM3 310 aa15.01□□□□□ -0.01
CCDC88A-201ENST00000263630 PDE11AQ9HCR9 933 aa15.01□□□□□ -0.01
CCDC88A-201ENST00000263630 RNF14Q9UBS8 474 aa15.01□□□□□ -0.01
CCDC88A-201ENST00000263630 CHURC1Q8WUH1 139 aa15.01□□□□□ -0.01
CCDC88A-201ENST00000263630 PBKQ96KB5 322 aa15.01□□□□□ -0.01
CCDC88A-201ENST00000263630 MAPK4P31152 587 aa15.01□□□□□ -0.01
CCDC88A-201ENST00000263630 ADKP55263 362 aaKnown RBP15.01□□□□□ -0.01
CCDC88A-201ENST00000263630 TROQ12816 1431 aaPredicted RBP15.01□□□□□ -0.01
CCDC88A-201ENST00000263630 DARS2Q6PI48 645 aaKnown RBP15.01□□□□□ -0.01
CCDC88A-201ENST00000263630 COPS6Q7L5N1 327 aa15.01□□□□□ -0.01
CCDC88A-201ENST00000263630 RBM46Q8TBY0 533 aaKnown RBP15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms