RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 ATG4DQ86TL0 474 aaPredicted RBP6.41□□□□□ -1.38
CCDC54-201ENST00000261058 ANKLE2Q86XL3 938 aa6.41□□□□□ -1.38
CCDC54-201ENST00000261058 TMEM169Q96HH4 297 aa6.41□□□□□ -1.38
CCDC54-201ENST00000261058 KRTAP9-9Q9BYP9 154 aa6.41□□□□□ -1.38
CCDC54-201ENST00000261058 KRTAP9-4Q9BYQ2 154 aa6.41□□□□□ -1.38
CCDC54-201ENST00000261058 CELF4Q9BZC1 486 aaKnown RBP6.41□□□□□ -1.38
CCDC54-201ENST00000261058 TNFRSF12AQ9NP84 129 aa6.41□□□□□ -1.38
CCDC54-201ENST00000261058 IFT57Q9NWB7 429 aa6.41□□□□□ -1.38
CCDC54-201ENST00000261058 RWDD3Q9Y3V2 267 aa6.41□□□□□ -1.38
CCDC54-201ENST00000261058 SRGAP3O43295 1099 aa6.4□□□□□ -1.39
CCDC54-201ENST00000261058 PDE8AO60658 829 aa6.4□□□□□ -1.39
CCDC54-201ENST00000261058 DNAJC6O75061 913 aa6.4□□□□□ -1.39
CCDC54-201ENST00000261058 GLI4P10075 376 aa6.4□□□□□ -1.39
CCDC54-201ENST00000261058 MYCLP1P12525 358 aaPredicted RBP6.4□□□□□ -1.39
CCDC54-201ENST00000261058 RAC2P15153 192 aa6.4□□□□□ -1.39
CCDC54-201ENST00000261058 PNLIPP16233 465 aa6.4□□□□□ -1.39
CCDC54-201ENST00000261058 FPR2P25090 351 aa6.4□□□□□ -1.39
CCDC54-201ENST00000261058 MROH9Q5TGP6 573 aa6.4□□□□□ -1.39
CCDC54-201ENST00000261058 CEP68Q76N32 757 aa6.4□□□□□ -1.39
CCDC54-201ENST00000261058 TEX2Q8IWB9 1127 aa6.4□□□□□ -1.39
CCDC54-201ENST00000261058 PPM1KQ8N3J5 372 aa6.4□□□□□ -1.39
CCDC54-201ENST00000261058 LZTR1Q8N653 840 aa6.4□□□□□ -1.39
CCDC54-201ENST00000261058 NUP43Q8NFH3 380 aa6.4□□□□□ -1.39
CCDC54-201ENST00000261058 GPATCH3Q96I76 525 aa6.4□□□□□ -1.39
CCDC54-201ENST00000261058 MTFR1LQ9H019 292 aa6.4□□□□□ -1.39
CCDC54-201ENST00000261058 IPPKQ9H8X2 491 aa6.4□□□□□ -1.39
CCDC54-201ENST00000261058 MARCH2Q9P0N8 246 aa6.4□□□□□ -1.39
CCDC54-201ENST00000261058 C22orf46C9J442 243 aa6.39□□□□□ -1.39
CCDC54-201ENST00000261058 FAM47E-STBD1D6RA91 191 aa6.39□□□□□ -1.39
CCDC54-201ENST00000261058 POU3F3P20264 500 aaPredicted RBP6.39□□□□□ -1.39
CCDC54-201ENST00000261058 AFMP43652 599 aa6.39□□□□□ -1.39
CCDC54-201ENST00000261058 ERVFRD-1P60508 538 aa6.39□□□□□ -1.39
CCDC54-201ENST00000261058 FYB2Q5VWT5 728 aa6.39□□□□□ -1.39
CCDC54-201ENST00000261058 FILIP1Q7Z7B0 1213 aa6.39□□□□□ -1.39
CCDC54-201ENST00000261058 RNF32Q9H0A6 362 aa6.39□□□□□ -1.39
CCDC54-201ENST00000261058 CLDND1Q9NY35 253 aa6.39□□□□□ -1.39
CCDC54-201ENST00000261058 YBX2Q9Y2T7 364 aaKnown RBP6.39□□□□□ -1.39
CCDC54-201ENST00000261058 OPA1O60313 960 aa6.38□□□□□ -1.39
CCDC54-201ENST00000261058 FUCA1P04066 466 aa6.38□□□□□ -1.39
CCDC54-201ENST00000261058 ITGB5P18084 799 aa6.38□□□□□ -1.39
CCDC54-201ENST00000261058 SLC6A11P48066 632 aa6.38□□□□□ -1.39
CCDC54-201ENST00000261058 MECP2P51608 486 aaKnown RBP6.38□□□□□ -1.39
CCDC54-201ENST00000261058 CYP4F8P98187 520 aa6.38□□□□□ -1.39
CCDC54-201ENST00000261058 EMC4Q5J8M3 183 aa6.38□□□□□ -1.39
CCDC54-201ENST00000261058 C16orf59Q7L2K0 433 aa6.38□□□□□ -1.39
CCDC54-201ENST00000261058 NETO2Q8NC67 525 aa6.38□□□□□ -1.39
CCDC54-201ENST00000261058 ABHD4Q8TB40 342 aa6.38□□□□□ -1.39
CCDC54-201ENST00000261058 TRMT2BQ96GJ1 504 aaKnown RBP6.38□□□□□ -1.39
CCDC54-201ENST00000261058 EPB41L1Q9H4G0 881 aa6.38□□□□□ -1.39
CCDC54-201ENST00000261058 CAAP1Q9H8G2 361 aa6.38□□□□□ -1.39
CCDC54-201ENST00000261058 GPR160Q9UJ42 338 aa6.38□□□□□ -1.39
CCDC54-201ENST00000261058 JMJD7P0C870 316 aa6.37□□□□□ -1.39
CCDC54-201ENST00000261058 NCLP19338 710 aaKnown RBP6.37□□□□□ -1.39
CCDC54-201ENST00000261058 LACTBP83111 547 aaPredicted RBP6.37□□□□□ -1.39
CCDC54-201ENST00000261058 WWC2Q6AWC2 1192 aa6.37□□□□□ -1.39
CCDC54-201ENST00000261058 OVCH1Q7RTY7 1134 aa6.37□□□□□ -1.39
CCDC54-201ENST00000261058 KIF18BQ86Y91 864 aa6.37□□□□□ -1.39
CCDC54-201ENST00000261058 ZC3H7AQ8IWR0 971 aaKnown RBP6.37□□□□□ -1.39
CCDC54-201ENST00000261058 FBXW5Q969U6 566 aa6.37□□□□□ -1.39
CCDC54-201ENST00000261058 JAM3Q9BX67 310 aa6.37□□□□□ -1.39
CCDC54-201ENST00000261058 CCDC66A2RUB6 948 aa6.36□□□□□ -1.39
CCDC54-201ENST00000261058 GLRX3O76003 335 aaKnown RBP6.36□□□□□ -1.39
CCDC54-201ENST00000261058 DBHP09172 617 aa6.36□□□□□ -1.39
CCDC54-201ENST00000261058 TACR1P25103 407 aa6.36□□□□□ -1.39
CCDC54-201ENST00000261058 FLT3P36888 993 aa6.36□□□□□ -1.39
CCDC54-201ENST00000261058 AMPD3Q01432 767 aa6.36□□□□□ -1.39
CCDC54-201ENST00000261058 PTPROQ16827 1216 aa6.36□□□□□ -1.39
CCDC54-201ENST00000261058 CDCA2Q69YH5 1023 aaPredicted RBP6.36□□□□□ -1.39
CCDC54-201ENST00000261058 OTOP3Q7RTS5 596 aa6.36□□□□□ -1.39
CCDC54-201ENST00000261058 DDX53Q86TM3 631 aaKnown RBP6.36□□□□□ -1.39
CCDC54-201ENST00000261058 AHI1Q8N157 1196 aa6.36□□□□□ -1.39
CCDC54-201ENST00000261058 AFAP1L2Q8N4X5 818 aa6.36□□□□□ -1.39
CCDC54-201ENST00000261058 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.36□□□□□ -1.39
CCDC54-201ENST00000261058 CHAC2Q8WUX2 184 aa6.36□□□□□ -1.39
CCDC54-201ENST00000261058 KIRREL1Q96J84 757 aa6.36□□□□□ -1.39
CCDC54-201ENST00000261058 CHAMP1Q96JM3 812 aa6.36□□□□□ -1.39
CCDC54-201ENST00000261058 PDGFDQ9GZP0 370 aaPredicted RBP6.36□□□□□ -1.39
CCDC54-201ENST00000261058 BTG4Q9NY30 223 aa6.36□□□□□ -1.39
CCDC54-201ENST00000261058 CBLCQ9ULV8 474 aa6.36□□□□□ -1.39
CCDC54-201ENST00000261058 COQ6Q9Y2Z9 468 aa6.36□□□□□ -1.39
CCDC54-201ENST00000261058 A0A1W2PQ27 194 aa6.35□□□□□ -1.39
CCDC54-201ENST00000261058 A0A1W2PQ64 194 aa6.35□□□□□ -1.39
CCDC54-201ENST00000261058 A0A1W2PQC6 194 aa6.35□□□□□ -1.39
CCDC54-201ENST00000261058 A0A1W2PQD8 194 aa6.35□□□□□ -1.39
CCDC54-201ENST00000261058 TCRBV5S4A2TA0A5A2 114 aa6.35□□□□□ -1.39
CCDC54-201ENST00000261058 ZNF561-AS1K7EIQ3 104 aa6.35□□□□□ -1.39
CCDC54-201ENST00000261058 GSTA4O15217 222 aa6.35□□□□□ -1.39
CCDC54-201ENST00000261058 TADA3O75528 432 aa6.35□□□□□ -1.39
CCDC54-201ENST00000261058 PAPLNO95428 1278 aa6.35□□□□□ -1.39
CCDC54-201ENST00000261058 NTRK1P04629 796 aa6.35□□□□□ -1.39
CCDC54-201ENST00000261058 CYBBP04839 570 aa6.35□□□□□ -1.39
CCDC54-201ENST00000261058 YBX3P16989 372 aaKnown RBP eCLIP6.35□□□□□ -1.39
CCDC54-201ENST00000261058 ARL4AP40617 200 aa6.35□□□□□ -1.39
CCDC54-201ENST00000261058 PCBP1Q15365 356 aaKnown RBP eCLIP6.35□□□□□ -1.39
CCDC54-201ENST00000261058 SEPT7Q16181 437 aaKnown RBP6.35□□□□□ -1.39
CCDC54-201ENST00000261058 TMEM177Q53S58 311 aa6.35□□□□□ -1.39
CCDC54-201ENST00000261058 FAM47CQ5HY64 1035 aa6.35□□□□□ -1.39
CCDC54-201ENST00000261058 MCTP1Q6DN14 999 aa6.35□□□□□ -1.39
CCDC54-201ENST00000261058 CNNM4Q6P4Q7 775 aa6.35□□□□□ -1.39
CCDC54-201ENST00000261058 PKN3Q6P5Z2 889 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms