RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 CNNM2Q9H8M5 875 aa1.37□□□□□ -2.19
VPS35-212ENST00000640313 GMIPQ9P107 970 aa1.37□□□□□ -2.19
VPS35-212ENST00000640313 FBLN5Q9UBX5 448 aa1.37□□□□□ -2.19
VPS35-212ENST00000640313 FBXL21Q9UKT6 434 aa1.37□□□□□ -2.19
VPS35-212ENST00000640313 WWC3Q9ULE0 1092 aa1.37□□□□□ -2.19
VPS35-212ENST00000640313 TLR6Q9Y2C9 796 aa1.37□□□□□ -2.19
VPS35-212ENST00000640313 SOWAHDA6NJG2 315 aa1.36□□□□□ -2.19
VPS35-212ENST00000640313 RAMP2O60895 175 aa1.36□□□□□ -2.19
VPS35-212ENST00000640313 PPP1R11O60927 126 aaPredicted RBP1.36□□□□□ -2.19
VPS35-212ENST00000640313 CYP7B1O75881 506 aa1.36□□□□□ -2.19
VPS35-212ENST00000640313 ATE1O95260 518 aa1.36□□□□□ -2.19
VPS35-212ENST00000640313 ADH4P08319 380 aa1.36□□□□□ -2.19
VPS35-212ENST00000640313 MAKP20794 623 aa1.36□□□□□ -2.19
VPS35-212ENST00000640313 COMTP21964 271 aa1.36□□□□□ -2.19
VPS35-212ENST00000640313 BMP5P22003 454 aa1.36□□□□□ -2.19
VPS35-212ENST00000640313 MRPS21P82921 87 aaKnown RBP1.36□□□□□ -2.19
VPS35-212ENST00000640313 NFATC3Q12968 1075 aa1.36□□□□□ -2.19
VPS35-212ENST00000640313 ADAM9Q13443 819 aa1.36□□□□□ -2.19
VPS35-212ENST00000640313 CAMK2GQ13555 558 aaPredicted RBP1.36□□□□□ -2.19
VPS35-212ENST00000640313 MPP2Q14168 576 aa1.36□□□□□ -2.19
VPS35-212ENST00000640313 ANKRD39Q53RE8 183 aa1.36□□□□□ -2.19
VPS35-212ENST00000640313 LCE1AQ5T7P2 110 aa1.36□□□□□ -2.19
VPS35-212ENST00000640313 PRAMEF18Q5VWM3 479 aa1.36□□□□□ -2.19
VPS35-212ENST00000640313 ZKSCAN2Q63HK3 967 aa1.36□□□□□ -2.19
VPS35-212ENST00000640313 CD300LDQ6UXZ3 194 aa1.36□□□□□ -2.19
VPS35-212ENST00000640313 Q6ZPA2 131 aa1.36□□□□□ -2.19
VPS35-212ENST00000640313 Q6ZSN1 163 aa1.36□□□□□ -2.19
VPS35-212ENST00000640313 ZNF627Q7L945 461 aa1.36□□□□□ -2.19
VPS35-212ENST00000640313 STK32CQ86UX6 486 aa1.36□□□□□ -2.19
VPS35-212ENST00000640313 ZC3H18Q86VM9 953 aaKnown RBP1.36□□□□□ -2.19
VPS35-212ENST00000640313 C1orf210Q8IVY1 113 aa1.36□□□□□ -2.19
VPS35-212ENST00000640313 TMEM192Q8IY95 271 aa1.36□□□□□ -2.19
VPS35-212ENST00000640313 C7orf61Q8IZ16 206 aa1.36□□□□□ -2.19
VPS35-212ENST00000640313 FAM26EQ8N5C1 309 aa1.36□□□□□ -2.19
VPS35-212ENST00000640313 ZNF512BQ96KM6 892 aaPredicted RBP1.36□□□□□ -2.19
VPS35-212ENST00000640313 FCRL3Q96P31 734 aaPredicted RBP1.36□□□□□ -2.19
VPS35-212ENST00000640313 ZNF703Q9H7S9 590 aaPredicted RBP1.36□□□□□ -2.19
VPS35-212ENST00000640313 MMRN2Q9H8L6 949 aa1.36□□□□□ -2.19
VPS35-212ENST00000640313 L2HGDHQ9H9P8 463 aa1.36□□□□□ -2.19
VPS35-212ENST00000640313 BARX1Q9HBU1 254 aaPredicted RBP1.36□□□□□ -2.19
VPS35-212ENST00000640313 NGRNQ9NPE2 291 aaKnown RBP1.36□□□□□ -2.19
VPS35-212ENST00000640313 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP1.36□□□□□ -2.19
VPS35-212ENST00000640313 ADAM29Q9UKF5 820 aa1.36□□□□□ -2.19
VPS35-212ENST00000640313 USTQ9Y2C2 406 aa1.36□□□□□ -2.19
VPS35-212ENST00000640313 AK5Q9Y6K8 562 aa1.36□□□□□ -2.19
VPS35-212ENST00000640313 H0Y8X5 98 aa1.35□□□□□ -2.19
VPS35-212ENST00000640313 SHOXO15266 292 aa1.35□□□□□ -2.19
VPS35-212ENST00000640313 FOXN1O15353 648 aa1.35□□□□□ -2.19
VPS35-212ENST00000640313 CNOT4O95628 575 aaKnown RBP1.35□□□□□ -2.19
VPS35-212ENST00000640313 PF4P02776 101 aa1.35□□□□□ -2.19
VPS35-212ENST00000640313 C1SP09871 688 aa1.35□□□□□ -2.19
VPS35-212ENST00000640313 KRT4P19013 534 aa1.35□□□□□ -2.19
VPS35-212ENST00000640313 GNA15P30679 374 aa1.35□□□□□ -2.19
VPS35-212ENST00000640313 POLR2BP30876 1174 aaKnown RBP1.35□□□□□ -2.19
VPS35-212ENST00000640313 ST13P50502 369 aaKnown RBP1.35□□□□□ -2.19
VPS35-212ENST00000640313 MLLT6P55198 1093 aaPredicted RBP1.35□□□□□ -2.19
VPS35-212ENST00000640313 TUBA3CQ13748 450 aa1.35□□□□□ -2.19
VPS35-212ENST00000640313 CR1LQ2VPA4 569 aa1.35□□□□□ -2.19
VPS35-212ENST00000640313 COLEC12Q5KU26 742 aa1.35□□□□□ -2.19
VPS35-212ENST00000640313 PAPD7Q5XG87 772 aaKnown RBP1.35□□□□□ -2.19
VPS35-212ENST00000640313 WWC2Q6AWC2 1192 aa1.35□□□□□ -2.19
VPS35-212ENST00000640313 RCSD1Q6JBY9 416 aa1.35□□□□□ -2.19
VPS35-212ENST00000640313 TUBA3EQ6PEY2 450 aa1.35□□□□□ -2.19
VPS35-212ENST00000640313 NLRC3Q7RTR2 1065 aa1.35□□□□□ -2.19
VPS35-212ENST00000640313 REC114Q7Z4M0 266 aa1.35□□□□□ -2.19
VPS35-212ENST00000640313 FAM126BQ8IXS8 530 aa1.35□□□□□ -2.19
VPS35-212ENST00000640313 IL17DQ8TAD2 202 aa1.35□□□□□ -2.19
VPS35-212ENST00000640313 ZNF483Q8TF39 744 aaPredicted RBP1.35□□□□□ -2.19
VPS35-212ENST00000640313 NTN5Q8WTR8 489 aaPredicted RBP1.35□□□□□ -2.19
VPS35-212ENST00000640313 ATG4CQ96DT6 458 aa1.35□□□□□ -2.19
VPS35-212ENST00000640313 ZNF764Q96H86 408 aaPredicted RBP1.35□□□□□ -2.19
VPS35-212ENST00000640313 RHOVQ96L33 236 aa1.35□□□□□ -2.19
VPS35-212ENST00000640313 GNRHR2Q96P88 292 aa1.35□□□□□ -2.19
VPS35-212ENST00000640313 PLEKHG4BQ96PX9 1271 aa1.35□□□□□ -2.19
VPS35-212ENST00000640313 DSCC1Q9BVC3 393 aa1.35□□□□□ -2.19
VPS35-212ENST00000640313 MKRN2Q9H000 416 aaKnown RBP1.35□□□□□ -2.19
VPS35-212ENST00000640313 EHMT1Q9H9B1 1298 aa1.35□□□□□ -2.19
VPS35-212ENST00000640313 FTSJ1Q9UET6 329 aa1.35□□□□□ -2.19
VPS35-212ENST00000640313 SLC4A7Q9Y6M7 1214 aa1.35□□□□□ -2.19
VPS35-212ENST00000640313 ROBO2Q9HCK4 1378 aa1.34□□□□□ -2.19
VPS35-212ENST00000640313 A0A087WZG4 1122 aa1.34□□□□□ -2.19
VPS35-212ENST00000640313 TNFRSF10CO14798 259 aa1.34□□□□□ -2.19
VPS35-212ENST00000640313 SGSM2O43147 1006 aa1.34□□□□□ -2.19
VPS35-212ENST00000640313 RAD17O75943 681 aa1.34□□□□□ -2.19
VPS35-212ENST00000640313 PEX11BO96011 259 aa1.34□□□□□ -2.19
VPS35-212ENST00000640313 NTRK1P04629 796 aa1.34□□□□□ -2.19
VPS35-212ENST00000640313 ACO1P21399 889 aaKnown RBP1.34□□□□□ -2.19
VPS35-212ENST00000640313 ACRV1P26436 265 aa1.34□□□□□ -2.19
VPS35-212ENST00000640313 MAPK1P28482 360 aa1.34□□□□□ -2.19
VPS35-212ENST00000640313 C21orf58P58505 322 aa1.34□□□□□ -2.19
VPS35-212ENST00000640313 ZNF445P59923 1031 aa1.34□□□□□ -2.19
VPS35-212ENST00000640313 NKX3-2P78367 333 aa1.34□□□□□ -2.19
VPS35-212ENST00000640313 TAF1CQ15572 869 aaPredicted RBP1.34□□□□□ -2.19
VPS35-212ENST00000640313 EEF1DP3Q658K8 133 aa1.34□□□□□ -2.19
VPS35-212ENST00000640313 OVOS1Q6IE37 1185 aa1.34□□□□□ -2.19
VPS35-212ENST00000640313 MAMDC4Q6UXC1 1216 aa1.34□□□□□ -2.19
VPS35-212ENST00000640313 PRIMA1Q86XR5 153 aa1.34□□□□□ -2.19
VPS35-212ENST00000640313 DCP2Q8IU60 420 aaKnown RBP1.34□□□□□ -2.19
VPS35-212ENST00000640313 ZSCAN29Q8IWY8 852 aaPredicted RBP1.34□□□□□ -2.19
VPS35-212ENST00000640313 GIMAP8Q8ND71 665 aaPredicted RBP1.34□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 111.3 ms