RNA–Protein interactions for RNA: ENST00000590541.1

RETREG3-210, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 4

Gene RETREG3, Length 409 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-210ENST00000590541 LMCD1Q9NZU5 365 aa20.48■□□□□ 0.87
RETREG3-210ENST00000590541 MTMR7Q9Y216 660 aa20.48■□□□□ 0.87
RETREG3-210ENST00000590541 PTPDC1A2A3K4 754 aa20.47■□□□□ 0.87
RETREG3-210ENST00000590541 TSPY2A6NKD2 308 aa20.47■□□□□ 0.87
RETREG3-210ENST00000590541 NKRFO15226 690 aaKnown RBP eCLIP20.47■□□□□ 0.87
RETREG3-210ENST00000590541 KPNA6O60684 536 aa20.47■□□□□ 0.87
RETREG3-210ENST00000590541 SLC16A2P36021 539 aa20.47■□□□□ 0.87
RETREG3-210ENST00000590541 KCNJ6P48051 423 aa20.47■□□□□ 0.87
RETREG3-210ENST00000590541 NOVP48745 357 aa20.47■□□□□ 0.87
RETREG3-210ENST00000590541 WDR5P61964 334 aaKnown RBP20.47■□□□□ 0.87
RETREG3-210ENST00000590541 PPP2R5BQ15173 497 aa20.47■□□□□ 0.87
RETREG3-210ENST00000590541 BRDTQ58F21 947 aaPredicted RBP20.47■□□□□ 0.87
RETREG3-210ENST00000590541 CTAGE1Q96RT6 745 aa20.47■□□□□ 0.87
RETREG3-210ENST00000590541 EDNRBP24530 442 aa20.46■□□□□ 0.87
RETREG3-210ENST00000590541 CCDC96Q2M329 555 aa20.46■□□□□ 0.87
RETREG3-210ENST00000590541 LRRFIP1Q32MZ4 808 aaKnown RBP20.46■□□□□ 0.87
RETREG3-210ENST00000590541 BTNL9Q6UXG8 535 aa20.46■□□□□ 0.87
RETREG3-210ENST00000590541 DCAF4Q8WV16 495 aa20.46■□□□□ 0.87
RETREG3-210ENST00000590541 CLEC4DQ8WXI8 215 aa20.46■□□□□ 0.87
RETREG3-210ENST00000590541 NOD1Q9Y239 953 aa20.46■□□□□ 0.87
RETREG3-210ENST00000590541 RAD50Q92878 1312 aa20.46■□□□□ 0.87
RETREG3-210ENST00000590541 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP20.45■□□□□ 0.86
RETREG3-210ENST00000590541 FOXP2O15409 715 aa20.45■□□□□ 0.86
RETREG3-210ENST00000590541 CALML3P27482 149 aa20.45■□□□□ 0.86
RETREG3-210ENST00000590541 DEFB103AP81534 67 aa20.45■□□□□ 0.86
RETREG3-210ENST00000590541 CTDSPL2Q05D32 466 aa20.45■□□□□ 0.86
RETREG3-210ENST00000590541 PTGISQ16647 500 aa20.45■□□□□ 0.86
RETREG3-210ENST00000590541 SCFD2Q8WU76 684 aa20.45■□□□□ 0.86
RETREG3-210ENST00000590541 SUGCTQ9HAC7 445 aa20.45■□□□□ 0.86
RETREG3-210ENST00000590541 PDE4DQ08499 809 aa20.44■□□□□ 0.86
RETREG3-210ENST00000590541 AAMPQ13685 434 aa20.44■□□□□ 0.86
RETREG3-210ENST00000590541 SYDE2Q5VT97 1194 aa20.44■□□□□ 0.86
RETREG3-210ENST00000590541 RNF207Q6ZRF8 634 aa20.44■□□□□ 0.86
RETREG3-210ENST00000590541 ALYREFQ86V81 257 aaKnown RBP20.44■□□□□ 0.86
RETREG3-210ENST00000590541 CAGE1Q8TC20 777 aa20.44■□□□□ 0.86
RETREG3-210ENST00000590541 AFAP1L1Q8TED9 768 aa20.44■□□□□ 0.86
RETREG3-210ENST00000590541 UBE2ZQ9H832 354 aaPredicted RBP20.44■□□□□ 0.86
RETREG3-210ENST00000590541 TRIP12Q14669 1992 aaPredicted RBP20.43■□□□□ 0.86
RETREG3-210ENST00000590541 PRR33A8MZF0 331 aa20.43■□□□□ 0.86
RETREG3-210ENST00000590541 RBAK-RBAKDNI3L0D1 243 aa20.43■□□□□ 0.86
RETREG3-210ENST00000590541 ARIH2O95376 493 aa20.43■□□□□ 0.86
RETREG3-210ENST00000590541 TXNP10599 105 aaKnown RBP20.43■□□□□ 0.86
RETREG3-210ENST00000590541 RPS6P62753 249 aaKnown RBP20.43■□□□□ 0.86
RETREG3-210ENST00000590541 TCTN1Q2MV58 587 aa20.43■□□□□ 0.86
RETREG3-210ENST00000590541 ZMYM1Q5SVZ6 1142 aa20.43■□□□□ 0.86
RETREG3-210ENST00000590541 GDF6Q6KF10 455 aaPredicted RBP20.43■□□□□ 0.86
RETREG3-210ENST00000590541 FAM178BQ8IXR5 827 aa20.43■□□□□ 0.86
RETREG3-210ENST00000590541 DHX38Q92620 1227 aaKnown RBP20.43■□□□□ 0.86
RETREG3-210ENST00000590541 ZBED2Q9BTP6 218 aa20.43■□□□□ 0.86
RETREG3-210ENST00000590541 MTUS1Q9ULD2 1270 aa20.43■□□□□ 0.86
RETREG3-210ENST00000590541 GJB5O95377 273 aa20.42■□□□□ 0.86
RETREG3-210ENST00000590541 CHMP4BP1P59074 171 aa20.42■□□□□ 0.86
RETREG3-210ENST00000590541 ERVK-21P61565 698 aa20.42■□□□□ 0.86
RETREG3-210ENST00000590541 LEXMQ3ZCV2 418 aa20.42■□□□□ 0.86
RETREG3-210ENST00000590541 CNKSR3Q6P9H4 555 aa20.42■□□□□ 0.86
RETREG3-210ENST00000590541 SESTD1Q86VW0 696 aa20.42■□□□□ 0.86
RETREG3-210ENST00000590541 GJD3Q8N144 294 aa20.42■□□□□ 0.86
RETREG3-210ENST00000590541 CCDC155Q8N6L0 562 aa20.42■□□□□ 0.86
RETREG3-210ENST00000590541 GADD45GIP1Q8TAE8 222 aaPredicted RBP20.42■□□□□ 0.86
RETREG3-210ENST00000590541 TGS1Q96RS0 853 aaKnown RBP20.42■□□□□ 0.86
RETREG3-210ENST00000590541 PCDHB15Q9Y5E8 787 aa20.42■□□□□ 0.86
RETREG3-210ENST00000590541 BRWD1Q9NSI6 2320 aa20.42■□□□□ 0.86
RETREG3-210ENST00000590541 LINC01553A4QN01 128 aa20.41■□□□□ 0.86
RETREG3-210ENST00000590541 RANBP6O60518 1105 aaKnown RBP20.41■□□□□ 0.86
RETREG3-210ENST00000590541 NBNO60934 754 aa20.41■□□□□ 0.86
RETREG3-210ENST00000590541 CXCL10P02778 98 aa20.41■□□□□ 0.86
RETREG3-210ENST00000590541 SELPP16109 830 aa20.41■□□□□ 0.86
RETREG3-210ENST00000590541 RBL2Q08999 1139 aa20.41■□□□□ 0.86
RETREG3-210ENST00000590541 LRRC8DQ7L1W4 858 aa20.41■□□□□ 0.86
RETREG3-210ENST00000590541 DNERQ8NFT8 737 aa20.41■□□□□ 0.86
RETREG3-210ENST00000590541 KAT2BQ92831 832 aa20.41■□□□□ 0.86
RETREG3-210ENST00000590541 RAD9AQ99638 391 aa20.41■□□□□ 0.86
RETREG3-210ENST00000590541 GPCPD1Q9NPB8 672 aa20.41■□□□□ 0.86
RETREG3-210ENST00000590541 FRMPD2Q68DX3 1309 aaPredicted RBP20.41■□□□□ 0.86
RETREG3-210ENST00000590541 IL9P15248 144 aa20.4■□□□□ 0.86
RETREG3-210ENST00000590541 TTC41PQ6P2S7 1318 aa20.4■□□□□ 0.86
RETREG3-210ENST00000590541 CCDC62Q6P9F0 684 aa20.4■□□□□ 0.86
RETREG3-210ENST00000590541 MUC6Q6W4X9 2439 aa20.4■□□□□ 0.86
RETREG3-210ENST00000590541 MPHOSPH6Q99547 160 aaKnown RBP20.4■□□□□ 0.86
RETREG3-210ENST00000590541 ANAPC4Q9UJX5 808 aa20.4■□□□□ 0.86
RETREG3-210ENST00000590541 SIP14410 1827 aa20.39■□□□□ 0.86
RETREG3-210ENST00000590541 ABHD14A-ACY1A0A1B0GW23 586 aa20.39■□□□□ 0.85
RETREG3-210ENST00000590541 MMP3P08254 477 aa20.39■□□□□ 0.85
RETREG3-210ENST00000590541 FGRP09769 529 aa20.39■□□□□ 0.85
RETREG3-210ENST00000590541 CKBP12277 381 aa20.39■□□□□ 0.85
RETREG3-210ENST00000590541 KCNA5P22460 613 aa20.39■□□□□ 0.85
RETREG3-210ENST00000590541 PI4K2BQ8TCG2 481 aa20.39■□□□□ 0.85
RETREG3-210ENST00000590541 AFG1LQ8WV93 481 aa20.39■□□□□ 0.85
RETREG3-210ENST00000590541 YTHDC1Q96MU7 727 aaKnown RBP20.39■□□□□ 0.85
RETREG3-210ENST00000590541 TMEM47Q9BQJ4 181 aa20.39■□□□□ 0.85
RETREG3-210ENST00000590541 FSD1Q9BTV5 496 aa20.39■□□□□ 0.85
RETREG3-210ENST00000590541 ZBTB47Q9UFB7 747 aaPredicted RBP20.39■□□□□ 0.85
RETREG3-210ENST00000590541 ORC4O43929 436 aa20.38■□□□□ 0.85
RETREG3-210ENST00000590541 PARNO95453 639 aaKnown RBP20.38■□□□□ 0.85
RETREG3-210ENST00000590541 WDR19Q8NEZ3 1342 aa20.37■□□□□ 0.85
RETREG3-210ENST00000590541 PDHBP11177 359 aa20.37■□□□□ 0.85
RETREG3-210ENST00000590541 TOP1P11387 765 aaKnown RBP20.37■□□□□ 0.85
RETREG3-210ENST00000590541 ARHGAP1Q07960 439 aa20.37■□□□□ 0.85
RETREG3-210ENST00000590541 LY6KQ17RY6 165 aa20.37■□□□□ 0.85
RETREG3-210ENST00000590541 VPS53Q5VIR6 699 aa20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms