RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 GJA9P57773 515 aa23.26■■□□□ 1.31
SS18-218ENST00000581021 RNF180Q86T96 592 aa23.26■■□□□ 1.31
SS18-218ENST00000581021 NSUN6Q8TEA1 469 aaKnown RBP23.26■■□□□ 1.31
SS18-218ENST00000581021 GPKOWQ92917 476 aaPredicted RBP eCLIP23.26■■□□□ 1.31
SS18-218ENST00000581021 SEC63Q9UGP8 760 aaKnown RBP23.26■■□□□ 1.31
SS18-218ENST00000581021 NAP1L2Q9ULW6 460 aaPredicted RBP23.26■■□□□ 1.31
SS18-218ENST00000581021 RANBP2P49792 3224 aaKnown RBP23.25■■□□□ 1.31
SS18-218ENST00000581021 EVI5O60447 810 aa23.25■■□□□ 1.31
SS18-218ENST00000581021 ARIH2O95376 493 aa23.25■■□□□ 1.31
SS18-218ENST00000581021 CST5P28325 142 aaPredicted RBP23.25■■□□□ 1.31
SS18-218ENST00000581021 ADD1P35611 737 aaKnown RBP23.25■■□□□ 1.31
SS18-218ENST00000581021 EVCP57679 992 aa23.25■■□□□ 1.31
SS18-218ENST00000581021 NKX3-2P78367 333 aa23.25■■□□□ 1.31
SS18-218ENST00000581021 C8orf34Q49A92 452 aa23.25■■□□□ 1.31
SS18-218ENST00000581021 TYW1BQ6NUM6 668 aa23.25■■□□□ 1.31
SS18-218ENST00000581021 TLK2Q86UE8 772 aa23.25■■□□□ 1.31
SS18-218ENST00000581021 C7orf61Q8IZ16 206 aa23.25■■□□□ 1.31
SS18-218ENST00000581021 CYP46A1Q9Y6A2 500 aa23.25■■□□□ 1.31
SS18-218ENST00000581021 GCOM1H8Y6P7 765 aaPredicted RBP23.24■■□□□ 1.31
SS18-218ENST00000581021 C6orf222P0C671 652 aaPredicted RBP23.24■■□□□ 1.31
SS18-218ENST00000581021 POLR2MP0CAP2 368 aa23.24■■□□□ 1.31
SS18-218ENST00000581021 METAP2P50579 478 aaKnown RBP eCLIP23.24■■□□□ 1.31
SS18-218ENST00000581021 BEX3Q00994 111 aa23.24■■□□□ 1.31
SS18-218ENST00000581021 TRAF1Q13077 416 aa23.24■■□□□ 1.31
SS18-218ENST00000581021 KCNA10Q16322 511 aa23.24■■□□□ 1.31
SS18-218ENST00000581021 WWC2Q6AWC2 1192 aa23.24■■□□□ 1.31
SS18-218ENST00000581021 IQSEC1Q6DN90 963 aa23.24■■□□□ 1.31
SS18-218ENST00000581021 PDCD2LQ9BRP1 358 aa23.24■■□□□ 1.31
SS18-218ENST00000581021 LARP6Q9BRS8 491 aaKnown RBP23.24■■□□□ 1.31
SS18-218ENST00000581021 WDR11Q9BZH6 1224 aa23.24■■□□□ 1.31
SS18-218ENST00000581021 A0A1W2PQ45 241 aaPredicted RBP23.23■■□□□ 1.31
SS18-218ENST00000581021 A0A1W2PQY0 241 aa23.23■■□□□ 1.31
SS18-218ENST00000581021 MEIS2O14770 477 aa23.23■■□□□ 1.31
SS18-218ENST00000581021 ACLYP53396 1101 aa23.23■■□□□ 1.31
SS18-218ENST00000581021 SNX17Q15036 470 aa23.23■■□□□ 1.31
SS18-218ENST00000581021 DUSP28Q4G0W2 176 aa23.23■■□□□ 1.31
SS18-218ENST00000581021 ARHGEF16Q5VV41 709 aa23.23■■□□□ 1.31
SS18-218ENST00000581021 USP17L6PQ6QN14 398 aa23.23■■□□□ 1.31
SS18-218ENST00000581021 NOL8Q76FK4 1167 aaKnown RBP23.23■■□□□ 1.31
SS18-218ENST00000581021 FCHSD1Q86WN1 690 aa23.23■■□□□ 1.31
SS18-218ENST00000581021 IL17RAQ96F46 866 aa23.23■■□□□ 1.31
SS18-218ENST00000581021 NR3C2P08235 984 aa23.22■■□□□ 1.31
SS18-218ENST00000581021 PDIA3P30101 505 aaKnown RBP23.22■■□□□ 1.31
SS18-218ENST00000581021 SLC39A5Q6ZMH5 540 aa23.22■■□□□ 1.31
SS18-218ENST00000581021 HEATR3Q7Z4Q2 680 aa23.22■■□□□ 1.31
SS18-218ENST00000581021 COPS5Q92905 334 aa23.22■■□□□ 1.31
SS18-218ENST00000581021 IWS1Q96ST2 819 aa23.22■■□□□ 1.31
SS18-218ENST00000581021 NCOA5Q9HCD5 579 aaKnown RBP23.22■■□□□ 1.31
SS18-218ENST00000581021 MAP3K20Q9NYL2 800 aaKnown RBP23.22■■□□□ 1.31
SS18-218ENST00000581021 V9GY48 417 aaPredicted RBP23.22■■□□□ 1.31
SS18-218ENST00000581021 FRMPD4Q14CM0 1322 aa23.22■■□□□ 1.31
SS18-218ENST00000581021 DYNC1LI2O43237 492 aaPredicted RBP23.21■■□□□ 1.31
SS18-218ENST00000581021 PPFIA3O75145 1194 aa23.21■■□□□ 1.31
SS18-218ENST00000581021 RGS20O76081 388 aa23.21■■□□□ 1.31
SS18-218ENST00000581021 RTP1P59025 263 aa23.21■■□□□ 1.31
SS18-218ENST00000581021 PGM5Q15124 567 aa23.21■■□□□ 1.31
SS18-218ENST00000581021 NTRK3Q16288 839 aa23.21■■□□□ 1.31
SS18-218ENST00000581021 CCDC62Q6P9F0 684 aa23.21■■□□□ 1.31
SS18-218ENST00000581021 SAMD3Q8N6K7 520 aa23.21■■□□□ 1.31
SS18-218ENST00000581021 SCFD2Q8WU76 684 aa23.21■■□□□ 1.31
SS18-218ENST00000581021 ZFP91Q96JP5 570 aaPredicted RBP23.21■■□□□ 1.31
SS18-218ENST00000581021 TSEN34Q9BSV6 310 aaKnown RBP23.21■■□□□ 1.31
SS18-218ENST00000581021 ZMYND8Q9ULU4 1186 aaPredicted RBP23.21■■□□□ 1.31
SS18-218ENST00000581021 PIK3CDO00329 1044 aa23.2■■□□□ 1.3
SS18-218ENST00000581021 ASGR1P07306 291 aa23.2■■□□□ 1.3
SS18-218ENST00000581021 ANAPC15P60006 121 aa23.2■■□□□ 1.3
SS18-218ENST00000581021 FSCN1Q16658 493 aaKnown RBP23.2■■□□□ 1.3
SS18-218ENST00000581021 TRIM60Q495X7 471 aa23.2■■□□□ 1.3
SS18-218ENST00000581021 GNASQ5JWF2 1037 aa23.2■■□□□ 1.3
SS18-218ENST00000581021 SEPT14Q6ZU15 432 aa23.2■■□□□ 1.3
SS18-218ENST00000581021 MPHOSPH6Q99547 160 aaKnown RBP23.2■■□□□ 1.3
SS18-218ENST00000581021 NR2E3Q9Y5X4 410 aa23.2■■□□□ 1.3
SS18-218ENST00000581021 STXBP3O00186 592 aa23.19■■□□□ 1.3
SS18-218ENST00000581021 CCT2P78371 535 aaKnown RBP23.19■■□□□ 1.3
SS18-218ENST00000581021 PPP2R5BQ15173 497 aa23.19■■□□□ 1.3
SS18-218ENST00000581021 STXBP2Q15833 593 aa23.19■■□□□ 1.3
SS18-218ENST00000581021 UBE2SQ16763 222 aa23.19■■□□□ 1.3
SS18-218ENST00000581021 VSIG10LQ86VR7 867 aa23.19■■□□□ 1.3
SS18-218ENST00000581021 PDRG1Q9NUG6 133 aa23.19■■□□□ 1.3
SS18-218ENST00000581021 Q9Y3F1 56 aa23.19■■□□□ 1.3
SS18-218ENST00000581021 KIAA1217Q5T5P2 1943 aa23.18■■□□□ 1.3
SS18-218ENST00000581021 MOXD2PA6NHM9 499 aa23.18■■□□□ 1.3
SS18-218ENST00000581021 B4DLN1 442 aa23.18■■□□□ 1.3
SS18-218ENST00000581021 MYCLP12524 364 aaPredicted RBP23.18■■□□□ 1.3
SS18-218ENST00000581021 SYN1P17600 705 aa23.18■■□□□ 1.3
SS18-218ENST00000581021 MRPL12P52815 198 aaKnown RBP23.18■■□□□ 1.3
SS18-218ENST00000581021 PKN1Q16512 942 aa23.18■■□□□ 1.3
SS18-218ENST00000581021 PHKBQ93100 1093 aa23.18■■□□□ 1.3
SS18-218ENST00000581021 AP5M1Q9H0R1 490 aa23.18■■□□□ 1.3
SS18-218ENST00000581021 PSTPIP2Q9H939 334 aa23.18■■□□□ 1.3
SS18-218ENST00000581021 SPC25Q9HBM1 224 aa23.18■■□□□ 1.3
SS18-218ENST00000581021 ADAMTS3O15072 1205 aa23.17■■□□□ 1.3
SS18-218ENST00000581021 EIF3JO75822 258 aaKnown RBP23.17■■□□□ 1.3
SS18-218ENST00000581021 TXNP10599 105 aaKnown RBP23.17■■□□□ 1.3
SS18-218ENST00000581021 MRPS9P82933 396 aaKnown RBP23.17■■□□□ 1.3
SS18-218ENST00000581021 LY6KQ17RY6 165 aa23.17■■□□□ 1.3
SS18-218ENST00000581021 C1orf53Q5VUE5 145 aa23.17■■□□□ 1.3
SS18-218ENST00000581021 CXCL17Q6UXB2 119 aa23.17■■□□□ 1.3
SS18-218ENST00000581021 PCSK9Q8NBP7 692 aaKnown RBP23.17■■□□□ 1.3
SS18-218ENST00000581021 ATP11BQ9Y2G3 1177 aa23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 138.2 ms